Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.1e-287 992.6 506 100.0
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.0e-221 773.5 456 88.4
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.1e-220 770.0 459 87.4
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 9.6e-204 713.8 456 81.1
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 1.5e-201 706.4 471 81.1
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.6e-187 659.8 458 77.5
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 6.2e-187 657.9 463 77.1
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 1.3e-181 640.2 459 74.9
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 4.6e-174 615.1 461 69.6
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 6.1e-174 614.8 462 70.3
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 3.1e-170 602.4 458 69.2
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.2e-169 600.5 458 69.9
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 5.1e-165 585.1 430 69.8
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 6.7e-165 584.7 459 68.0
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 8.8e-165 584.3 430 71.2
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 1.1e-164 583.9 460 66.3
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.0e-164 583.2 474 67.3
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 3.3e-164 582.4 474 66.9
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 7.0e-162 574.7 476 66.0
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 2.2e-160 569.7 458 67.5
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 5.0e-160 568.5 476 64.9
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.9e-159 566.6 464 67.2
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 3.2e-159 565.8 470 66.0
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 9.4e-159 564.3 484 63.8
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 4.7e-158 562.0 461 66.2
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 8.0e-158 561.2 419 70.6
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 3.3e-156 555.8 469 65.5
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 9.7e-156 554.3 461 65.9
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 1.7e-155 553.5 378 72.8
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 3.7e-155 552.4 466 64.2
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 8.2e-155 551.2 467 64.9
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 9.1e-154 547.7 438 67.6
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 9.1e-154 547.7 465 64.5
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 9.1e-154 547.7 457 62.1
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.2e-153 547.4 462 63.9
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.6e-153 547.0 459 64.7
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 2.0e-153 546.6 479 61.8
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 7.7e-153 544.7 337 81.3
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.2e-152 543.1 441 66.2
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 2.9e-152 542.7 476 61.8
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 5.0e-152 542.0 456 63.2
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 8.5e-152 541.2 356 74.2
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 8.5e-152 541.2 456 63.2
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.5e-151 540.4 456 62.9
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.5e-151 539.7 357 74.8
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 3.2e-151 539.3 465 63.7
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 7.2e-151 538.1 478 61.1
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.6e-150 537.0 472 62.5
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 2.7e-150 536.2 473 62.2
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 4.7e-150 535.4 472 62.5
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 6.1e-150 535.0 460 62.6
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 8.0e-150 534.6 474 63.3
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.0e-149 534.3 456 62.7
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.4e-149 533.9 458 62.7
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 3.0e-149 532.7 463 62.9
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 4.0e-149 532.3 386 76.2
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 5.2e-149 531.9 458 62.2
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.8e-149 531.2 454 64.1
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.4e-148 529.3 454 63.9
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 4.4e-148 528.9 424 65.3
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 4.4e-148 528.9 424 65.3
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 4.4e-148 528.9 470 63.0
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 9.8e-148 527.7 342 75.7
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 1.3e-147 527.3 432 65.0
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.3e-147 527.3 447 63.8
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 2.8e-147 526.2 444 63.1
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 2.8e-147 526.2 444 63.1
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 4.8e-147 525.4 456 62.5
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 6.3e-147 525.0 485 60.4
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.3e-147 525.0 451 62.7
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 6.3e-147 525.0 456 62.9
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 1.8e-146 523.5 357 72.0
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 3.1e-146 522.7 395 67.1
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 3.1e-146 522.7 450 62.9
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 3.1e-146 522.7 443 62.8
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 7.0e-146 521.5 451 63.2
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 7.0e-146 521.5 441 62.6
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 7.0e-146 521.5 441 62.6
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.0e-146 521.5 523 56.4
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 1.6e-145 520.4 449 63.3
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.7e-145 519.6 355 72.4
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 2.7e-145 519.6 475 61.3
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 3.5e-145 519.2 354 72.6
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 4.5e-145 518.8 521 55.7
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 5.9e-145 518.5 435 63.0
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 5.9e-145 518.5 435 63.0
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 5.9e-145 518.5 440 63.2
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.3e-144 517.3 444 61.9
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.7e-144 516.9 347 73.2
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 1.7e-144 516.9 456 61.6
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.7e-144 516.9 458 62.7
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.8e-144 515.8 455 63.5
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 5.0e-144 515.4 461 61.0
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 5.0e-144 515.4 457 62.1
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 6.5e-144 515.0 436 63.3
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.5e-144 514.6 466 61.8
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 3.2e-143 512.7 450 61.1
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 5.5e-143 511.9 461 61.4
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 5.5e-143 511.9 363 70.8
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 7.2e-143 511.5 466 62.2
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 1.2e-142 510.8 398 65.3
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 1.6e-142 510.4 474 61.2
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 1.6e-142 510.4 404 66.3
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 2.1e-142 510.0 461 62.3
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.1e-142 510.0 374 68.2
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 2.7e-142 509.6 405 65.9
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.8e-141 506.9 452 60.8
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 3.0e-141 506.1 467 62.3
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 3.0e-141 506.1 428 62.4
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 6.8e-141 505.0 416 63.7
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.5e-140 503.8 416 62.7
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 7.5e-140 501.5 441 61.7
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 4.5e-137 492.3 490 54.9
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.3e-136 490.7 352 69.3
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.9e-135 486.9 378 65.9
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 2.5e-135 486.5 532 52.8
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.3e-135 485.0 507 56.6
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 9.5e-135 484.6 352 67.9
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 1.0e-133 481.1 575 50.6
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 4.0e-133 479.2 362 65.5
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 6.8e-133 478.4 429 63.2
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 1.2e-132 477.6 462 58.0
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 2.9e-131 473.0 350 68.9
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 6.4e-131 471.9 388 64.4
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.4e-130 468.8 357 67.2
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.6e-129 467.2 354 65.3
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 6.6e-128 461.8 458 56.8
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.5e-127 460.7 369 66.1
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 8.9e-125 451.4 412 58.5
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 8.9e-125 451.4 423 59.1
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.2e-124 451.1 381 60.6
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 2.6e-124 449.9 450 56.0
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 2.0e-121 440.3 460 51.7
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 3.5e-121 439.5 468 53.8
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 6.0e-121 438.7 303 69.3
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 3.9e-120 436.0 447 55.9
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 5.0e-120 435.6 446 53.1
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 4.3e-119 432.6 303 69.6
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.8e-117 427.2 379 58.3
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.5e-116 424.1 373 60.1
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 4.4e-116 422.5 401 59.9
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.7e-115 420.6 339 61.7
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.7e-115 420.6 456 53.3
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.9e-115 419.9 351 60.4
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 7.3e-111 405.2 436 55.3
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.2e-110 404.4 297 69.4
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 4.1e-106 389.4 442 51.8
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 9.9e-100 368.2 471 48.4
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.6e-89 334.3 213 75.6
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 1.8e-72 277.7 273 62.3
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.5e-71 274.6 313 53.4
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.3e-69 266.2 291 53.3
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.1e-66 258.5 381 42.3
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 4.8e-62 243.0 158 74.7
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.9e-59 233.8 245 55.5
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 7.2e-50 202.6 240 55.8
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 6.7e-40 169.5 328 32.6
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.7e-33 147.5 432 30.3
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 3.7e-30 137.1 99 64.6
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.7e-27 128.3 137 47.4
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 1.5e-26 125.2 75 77.3
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.5e-26 123.2 348 30.2
Lalb_Chr11g0074511 Lupinus albus HOM05D004042 ORTHO05D004552 1.7e-22 111.7 133 56.4
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.9e-18 98.2 49 85.7
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 1.0e-16 92.4 207 30.9
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.6e-12 78.6 250 27.6
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 5.9e-12 76.6 126 46.0
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 5.6e-10 70.1 66 50.0
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 6.8e-08 63.2 61 57.4
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 2.2e-06 58.2 59 54.2
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.2e-06 58.2 32 81.2


User provided reference genes

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