Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 7.3e-98 360.5 179 100.0
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 8.6e-91 337.0 179 91.6
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 4.3e-90 334.7 177 91.0
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 7.3e-90 334.0 179 90.5
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.2e-89 333.2 179 91.1
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.8e-89 332.0 179 91.1
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 4.7e-89 331.3 179 91.1
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.1e-88 330.1 182 90.1
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 3.1e-88 328.6 179 90.5
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 5.2e-88 327.8 179 89.9
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 6.4e-86 320.9 183 86.9
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.4e-85 319.7 180 88.3
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.0e-83 313.5 178 86.5
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.0e-83 313.5 178 86.5
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 2.3e-83 312.4 176 88.1
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 3.9e-83 311.6 178 86.0
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 5.1e-83 311.2 178 86.5
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 6.6e-83 310.8 178 86.0
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 6.6e-83 310.8 178 86.0
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 8.7e-83 310.5 178 86.0
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.1e-82 310.1 179 85.5
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.1e-82 310.1 178 87.1
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.5e-82 309.7 178 86.0
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 3.3e-82 308.5 178 84.8
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 4.3e-82 308.1 178 86.0
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 5.6e-82 307.8 178 86.0
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.6e-82 307.0 178 83.7
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.6e-81 306.2 180 85.6
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.6e-81 306.2 178 84.8
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.6e-81 306.2 178 86.5
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 2.1e-81 305.8 177 86.4
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 3.6e-81 305.1 178 85.4
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.6e-81 305.1 178 84.3
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 6.2e-81 304.3 178 85.4
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 6.2e-81 304.3 178 83.7
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 8.1e-81 303.9 179 84.4
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 8.1e-81 303.9 179 84.4
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.4e-80 303.1 180 83.3
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.4e-80 303.1 178 84.3
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.4e-80 303.1 178 84.3
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.8e-80 302.8 180 82.2
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 2.4e-80 302.4 178 83.1
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.1e-80 302.0 178 83.1
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.1e-80 302.0 178 84.8
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.1e-80 302.0 178 83.1
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 3.1e-80 302.0 178 83.1
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.1e-80 302.0 180 81.7
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 4.0e-80 301.6 180 82.2
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 4.0e-80 301.6 178 83.1
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 5.3e-80 301.2 180 82.2
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 5.3e-80 301.2 179 83.8
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 5.3e-80 301.2 177 83.1
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 6.9e-80 300.8 180 82.2
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 9.0e-80 300.4 180 82.8
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.2e-79 300.1 177 83.1
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-79 299.7 180 81.7
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.5e-79 299.7 180 82.8
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 2.0e-79 299.3 180 81.1
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 2.0e-79 299.3 179 81.0
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 2.6e-79 298.9 178 80.9
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 4.4e-79 298.1 180 82.2
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 4.4e-79 298.1 180 82.2
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 5.8e-79 297.7 177 83.1
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 7.6e-79 297.4 169 87.0
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 7.6e-79 297.4 174 81.0
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 7.6e-79 297.4 177 83.1
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 7.6e-79 297.4 177 83.1
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 7.6e-79 297.4 177 83.1
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 1.3e-78 296.6 177 83.1
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.9e-78 295.4 179 79.3
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.8e-78 295.0 178 82.0
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 4.9e-78 294.7 181 81.2
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 6.4e-78 294.3 181 81.2
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 6.4e-78 294.3 181 81.2
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 6.4e-78 294.3 181 81.2
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 8.4e-78 293.9 176 82.4
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 8.4e-78 293.9 177 83.1
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 1.9e-77 292.7 181 80.7
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.2e-77 292.0 182 79.1
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 3.2e-77 292.0 177 81.4
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 4.2e-77 291.6 181 80.7
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 7.1e-77 290.8 182 81.3
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.2e-76 290.0 178 82.6
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.2e-76 290.0 178 79.2
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.2e-76 290.0 178 80.3
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.6e-76 289.7 178 79.2
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.1e-76 289.3 178 79.2
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.7e-76 288.9 180 78.9
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.7e-76 288.9 171 83.6
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 3.5e-76 288.5 200 74.0
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 3.5e-76 288.5 178 79.2
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 6.0e-76 287.7 169 82.2
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.7e-75 286.2 167 84.4
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.3e-75 285.8 168 83.9
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.3e-75 285.8 168 83.3
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.0e-75 285.4 178 78.1
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 3.9e-75 285.0 180 77.8
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 3.9e-75 285.0 167 83.8
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 6.6e-75 284.3 178 80.3
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 8.7e-75 283.9 166 81.9
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.1e-74 283.5 178 78.1
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.1e-74 283.5 178 78.1
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 2.5e-74 282.3 195 75.9
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 2.5e-74 282.3 178 75.8
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.3e-74 281.6 166 81.3
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 7.3e-74 280.8 167 82.6
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 2.8e-73 278.9 168 82.7
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.1e-73 277.3 167 82.6
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.1e-72 276.9 168 81.5
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.1e-72 275.4 168 81.5
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 4.0e-72 275.0 181 75.1
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 4.0e-72 275.0 181 75.1
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 6.9e-72 274.2 182 75.8
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.5e-71 273.1 177 76.3
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 5.8e-71 271.2 168 82.7
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 9.9e-71 270.4 167 79.0
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.7e-70 269.6 179 74.9
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.9e-70 268.9 157 84.7
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 4.9e-70 268.1 168 78.0
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 3.2e-69 265.4 178 75.8
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 9.3e-69 263.8 179 73.2
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.2e-68 263.5 167 78.4
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.1e-68 262.7 179 72.6
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 4.6e-68 261.5 173 70.5
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.0e-67 258.8 253 58.1
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 2.1e-65 252.7 151 84.1
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 8.1e-65 250.8 176 68.8
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 2.4e-64 249.2 179 68.7
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 9.0e-64 247.3 169 67.5
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 3.0e-59 232.3 144 79.9
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 5.7e-58 228.0 178 61.2
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 9.6e-58 227.3 170 64.1
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.6e-57 226.5 178 68.5
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 2.6e-55 219.2 170 62.4
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 9.0e-48 194.1 185 60.0
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 2.0e-47 193.0 169 54.4
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.8e-40 169.9 170 55.3
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 5.9e-39 164.9 101 84.2
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.4e-35 153.7 117 67.5
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 9.7e-34 147.5 103 74.8
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.2e-31 140.6 164 40.2
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 5.9e-31 138.3 80 82.5
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.9e-29 133.3 175 41.7
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.8e-27 126.7 75 84.0
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.8e-27 126.7 75 84.0
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 3.7e-25 119.0 206 40.3
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.1e-24 115.5 65 81.5
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 8.5e-22 107.8 100 57.0
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.5e-21 106.3 57 82.5
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.6e-20 103.6 54 90.7
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 4.4e-18 95.5 165 37.0
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 1.7e-17 93.6 63 76.2
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 4.8e-17 92.0 82 61.0
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 3.1e-16 89.4 165 34.5
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 5.9e-15 85.1 90 52.2
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 7.2e-13 78.2 88 52.3
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.4e-11 73.9 37 94.6
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 3.0e-11 72.8 49 69.4
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 8.8e-11 71.2 51 68.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 4.4e-10 68.9 38 89.5
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 8.3e-09 64.7 50 68.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 8.3e-09 64.7 55 61.8
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 3.5e-07 59.3 39 79.5
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 3.5e-07 59.3 39 79.5
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 3.5e-07 59.3 42 66.7
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 3.5e-07 59.3 41 68.3
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 5.0e-06 55.5 44 70.5


User provided reference genes

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