Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13073_v3 Cicer arietinum L. HOM05D002063 ORTHO05D002075 6.7e-128 460.7 233 100.0
Ca_13072_v3 Cicer arietinum L. HOM05D000037 ORTHO05D002075 5.2e-104 381.3 232 88.8
Medtr2g016190 Medicago truncatula HOM05D002063 ORTHO05D002075 6.0e-92 341.3 247 73.7
Psat1g197800 Pisum sativum HOM05D002063 ORTHO05D002075 3.2e-85 318.9 252 69.0
Glyma.13G229000 Glycine max HOM05D002063 ORTHO05D002075 1.9e-82 309.7 246 68.7
Glyma.15G083500 Glycine max HOM05D002063 ORTHO05D002075 6.8e-80 301.2 246 67.5
TPR.G11764 Trifolium pratense HOM05D002063 ORTHO05D002075 1.4e-77 293.5 247 66.8
Lj6g0027755 Lotus japonicus HOM05D002063 ORTHO05D002075 2.4e-77 292.7 246 65.0
VMungo0540G2378 Vigna mungo HOM05D002063 ORTHO05D002075 1.2e-76 290.4 246 65.0
Phvul.006G175400 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 8.1e-73 277.7 246 63.8
arahy.Tifrunner.gnm1.ann1.BM19ED Arachis hypogaea HOM05D002063 ORTHO05D002075 6.4e-70 268.1 249 58.6
arahy.Tifrunner.gnm1.ann1.V8BLVD Arachis hypogaea HOM05D002063 ORTHO05D002075 1.1e-69 267.3 249 59.0
Lalb_Chr18g0054571 Lupinus albus HOM05D002063 ORTHO05D002075 9.3e-69 264.2 251 57.8
Glyma.05G159000 Glycine max HOM05D002063 ORTHO05D002075 3.3e-58 229.2 247 52.2
Phvul.002G239200 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 4.8e-57 225.3 247 51.8
Glyma.08G116800 Glycine max HOM05D002063 ORTHO05D002075 9.0e-56 221.1 249 50.6
Lalb_Chr07g0186431 Lupinus albus HOM05D002063 ORTHO05D002075 7.4e-50 201.4 245 51.8
VMungo0251G3479 Vigna mungo HOM05D002063 ORTHO05D002075 4.0e-48 195.7 247 47.4
Lj4g0025797 Lotus japonicus HOM05D002063 ORTHO05D002075 1.4e-40 170.6 225 48.4
Medtr4g065073 Medicago truncatula HOM05D002063 ORTHO05D002075 2.5e-37 159.8 249 43.4
Medtr8g086460 Medicago truncatula HOM05D002063 ORTHO05D002075 2.5e-37 159.8 249 43.4
Ca_17915_v3 Cicer arietinum L. HOM05D002063 ORTHO05D002075 1.0e-35 154.5 246 42.7
arahy.Tifrunner.gnm1.ann1.67CBH9 Arachis hypogaea HOM05D002063 ORTHO05D002075 8.5e-30 134.8 201 42.8
TPR.G6806 Trifolium pratense HOM05D002063 ORTHO05D002075 1.9e-29 133.7 247 39.3
Psat7g070160 Pisum sativum HOM05D002063 ORTHO05D002075 6.7e-27 125.2 251 41.0
Cpa.g.sc7.77 Carica papaya HOM05D002063 ORTHO05D002075 9.7e-26 121.3 244 35.2
GSVIVG01021224001 Vitis vinifera HOM05D002063 ORTHO05D002075 3.7e-25 119.4 239 37.7
Thecc.06G169400 Theobroma cacao HOM05D002063 ORTHO05D002075 6.3e-25 118.6 277 36.1
Cfa000617 Carpinus fangiana HOM05D002063 ORTHO05D002075 3.4e-23 112.8 281 32.0
AUR62027692 Chenopodium quinoa HOM05D002063 ORTHO05D002075 3.4e-23 112.8 229 39.3
Atru.chr10.1653 Acer truncatum HOM05D002063 ORTHO05D002075 5.9e-23 112.1 253 37.9
COL.COLO4_31282 Corchorus olitorius HOM05D002063 ORTHO05D002075 7.7e-23 111.7 261 35.6
Potri.011G067000 Populus trichocarpa HOM05D002063 ORTHO05D002075 7.7e-23 111.7 250 36.8
Duzib192G1071 Durio zibethinus HOM05D002063 ORTHO05D002075 1.3e-22 110.9 253 35.6
CiPaw.10G059700 Carya illinoinensis HOM05D002063 ORTHO05D002075 1.7e-22 110.5 239 37.2
TWI60G0150 Tripterygium wilfordii HOM05D002063 ORTHO05D002075 1.7e-22 110.5 249 36.5
Haze_06218 Corylus avellana HOM05D002063 ORTHO05D002075 2.9e-22 109.8 281 31.3
MELO3C002658.2 Cucumis melo HOM05D002063 ORTHO05D002075 3.8e-22 109.4 200 37.5
Manes.17G056500 Manihot esculenta HOM05D002063 ORTHO05D002075 6.5e-22 108.6 241 37.8
Prupe.4G062300 Prunus persica HOM05D002063 ORTHO05D002075 6.5e-22 108.6 235 35.7
arahy.Tifrunner.gnm1.ann1.90CUL1 Arachis hypogaea HOM05D002063 ORTHO05D002075 1.1e-21 107.8 203 38.9
CsaV3_1G033290 Cucumis sativus L. HOM05D002063 ORTHO05D001117 1.9e-21 107.1 200 37.5
Duzib061G0001 Durio zibethinus HOM05D002063 ORTHO05D002075 5.5e-21 105.5 263 34.2
Sed0012556 Sechium edule HOM05D002063 ORTHO05D002075 1.2e-20 104.4 200 38.5
Sabra11G0048600 Salix brachista HOM05D002063 ORTHO05D002075 2.7e-20 103.2 251 35.9
ClCG03G007640 Citrullus lanatus HOM05D002063 ORTHO05D002075 6.1e-20 102.1 202 36.6
CiPaw.09G070400 Carya illinoinensis HOM05D002063 ORTHO05D002075 1.4e-19 100.9 201 39.3
Dinv40689 Davidia involucrata HOM05D002063 ORTHO05D002075 2.3e-19 100.1 248 32.3
Ciclev10014532m.g Citrus clementina HOM05D002063 ORTHO05D002075 3.9e-19 99.4 254 33.9
AUR62031220 Chenopodium quinoa HOM05D002063 ORTHO05D002075 6.7e-19 98.6 226 36.3
Eucgr.E02752 Eucalyptus grandis HOM05D002063 ORTHO05D002075 6.7e-19 98.6 245 33.9
Potri.004G057800 Populus trichocarpa HOM05D002063 ORTHO05D002075 8.8e-19 98.2 193 38.9
QL05p047487 Quercus lobata HOM05D002063 ORTHO05D002075 2.0e-18 97.1 258 31.0
Gohir.A10G036500 Gossypium hirsutum HOM05D002063 ORTHO05D002075 3.3e-18 96.3 171 37.4
EL10Ac8g20589 Beta vulgaris HOM05D002063 ORTHO05D002075 7.4e-18 95.1 247 32.8
Ah.14g087080 Amaranthus hybridus HOM05D002063 ORTHO05D002075 9.7e-18 94.7 220 34.5
Dinv16781 Davidia involucrata HOM05D002063 ORTHO05D002075 9.7e-18 94.7 204 34.3
Gorai.011G039100 Gossypium raimondii HOM05D002063 ORTHO05D002075 2.2e-17 93.6 171 36.3
Gohir.D10G037200 Gossypium hirsutum HOM05D002063 ORTHO05D002075 3.7e-17 92.8 171 36.3
MBI07_g09571_MAGBIO Magnolia biondii HOM05D002063 ORTHO05D002075 3.7e-17 92.8 248 32.7
Hund09960 Selenicereus undatus HOM05D002063 ORTHO05D002075 3.1e-16 89.7 197 34.5
MD10G1278900 Malus domestica HOM05D002063 ORTHO05D002075 4.1e-16 89.4 205 35.1
Sc17g0005720 Simmondsia chinensis HOM05D002063 ORTHO05D002075 9.1e-16 88.2 240 32.1
Hund21171 Selenicereus undatus HOM05D002063 ORTHO05D002075 4.5e-15 85.9 196 36.2
Aqoxy1G02039 Aquilegia oxysepala HOM05D002063 ORTHO05D002075 7.7e-15 85.1 241 34.0
CANSAT54G0797 Cannabis sativa HOM05D002063 ORTHO05D002075 1.0e-14 84.7 220 35.0
Sabra04G0037500 Salix brachista HOM05D002063 ORTHO05D002075 1.0e-14 84.7 195 37.4
RcHm_v2.0_Chr5g0010991 Rosa chinensis HOM05D002063 ORTHO05D002075 1.3e-14 84.3 262 30.2
Nn1g04435 Nelumbo nucifera HOM05D002063 ORTHO05D002075 1.7e-14 84.0 240 30.4
CSS0048552 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 2.2e-14 83.6 201 33.3
CSS0018909 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 5.0e-14 82.4 201 33.3
Hma1.2p1_0333F.1_g128110 Hydrangea macrophylla HOM05D002063 ORTHO05D002075 5.0e-14 82.4 246 31.3
TAR624G0717 Trochodendron aralioides HOM05D002063 ORTHO05D002075 5.5e-13 79.0 238 29.4
QL08p041891 Quercus lobata HOM05D002063 ORTHO05D002075 9.4e-13 78.2 203 33.0
Oeu039912.2 Olea europaea HOM05D002063 ORTHO05D002075 1.6e-12 77.4 220 31.4
MSTRG.16154 Avicennia marina HOM05D002063 ORTHO05D002075 2.1e-12 77.0 232 29.3
FAN25G1222 Fragaria x ananassa HOM05D002063 ORTHO05D002075 2.1e-12 77.0 278 29.1
AT1G29240 Arabidopsis thaliana HOM05D002063 ORTHO05D002075 2.7e-12 76.6 245 29.8
Aa31LG6G6300 Aethionema arabicum HOM05D002063 ORTHO05D002075 3.6e-12 76.3 181 30.4
Cc02_g15110 Coffea canephora HOM05D002063 ORTHO05D002075 3.6e-12 76.3 225 31.6
Sp1g25140 Schrenkiella parvula HOM05D002063 ORTHO05D002075 3.6e-12 76.3 231 29.9
Thhalv10007223m.g Eutrema salsugineum HOM05D002063 ORTHO05D002075 1.0e-11 74.7 222 31.1
FAN11G1180 Fragaria x ananassa HOM05D002063 ORTHO05D002075 1.0e-11 74.7 278 28.8
Oeu041763.1 Olea europaea HOM05D002063 ORTHO05D002075 1.0e-11 74.7 241 29.5
FAN16G0090 Fragaria x ananassa HOM05D002063 ORTHO05D002075 1.4e-11 74.3 278 28.8
Carub.0004s1580 Capsella rubella HOM05D002063 ORTHO05D002075 4.0e-11 72.8 239 28.5
Rhsim02G0143400 Rhododendron simsii HOM05D002063 ORTHO05D002075 4.0e-11 72.8 234 33.3
Dinv05584 Davidia involucrata HOM05D002063 ORTHO05D002075 6.7e-11 72.0 227 30.0
FvH4_3g07680 Fragaria vesca HOM05D002063 ORTHO05D002075 6.7e-11 72.0 281 28.1
DCAR_027995 Daucus carota HOM05D002063 ORTHO05D002075 1.5e-10 70.9 248 29.4
PGR042G2756 Punica granatum HOM05D002063 ORTHO05D002075 2.0e-10 70.5 195 32.8
DCAR_004000 Daucus carota HOM05D002063 ORTHO05D002075 4.4e-10 69.3 226 31.4
Aa31LG9G13950 Aethionema arabicum HOM05D002063 ORTHO05D002075 5.7e-10 68.9 242 27.7
vmacro16062 Vaccinium macrocarpon HOM05D002063 ORTHO05D002075 5.7e-10 68.9 229 31.4
Lj2A302T59 Lonicera japonica HOM05D002063 ORTHO05D002075 7.5e-10 68.6 235 30.6
Nitab4.5_0006324g0010 Nicotiana tabacum HOM05D002063 ORTHO05D002075 7.5e-10 68.6 266 30.8
Carub.0001s2741 Capsella rubella HOM05D002063 ORTHO05D002075 1.3e-09 67.8 199 31.2
Nn1g09178 Nelumbo nucifera HOM05D002063 ORTHO05D002075 1.7e-09 67.4 225 28.0
FAN21G3171 Fragaria x ananassa HOM05D002063 ORTHO05D002075 2.8e-09 66.6 281 27.4
Dinv07711 Davidia involucrata HOM05D002063 ORTHO05D002075 3.7e-09 66.2 229 31.9
BcaC01g00085 Brassica carinata HOM05D002063 ORTHO05D002075 4.8e-09 65.9 195 31.8
C03p75610 Brassica napus HOM05D002063 ORTHO05D002075 4.8e-09 65.9 195 31.8
MD05G1299600 Malus domestica HOM05D002063 ORTHO05D002075 4.8e-09 65.9 146 34.2
MSTRG.7414 Avicennia marina HOM05D002063 ORTHO05D002075 8.2e-09 65.1 220 27.7
A08p25230 Brassica napus HOM05D002063 ORTHO05D002075 8.2e-09 65.1 219 30.1
Nitab4.5_0000605g0110 Nicotiana tabacum HOM05D002063 ORTHO05D002075 8.2e-09 65.1 266 30.8
BolC3t19818H Brassica oleracea HOM05D002063 ORTHO05D002075 1.1e-08 64.7 197 31.5
Peaxi162Scf00940g00038 Petunia axillaris HOM05D002063 ORTHO05D002075 1.8e-08 63.9 242 30.6
BcaB03g12147 Brassica carinata HOM05D002063 ORTHO05D002075 2.4e-08 63.5 225 29.8
Sopen02g021610 Solanum pennellii HOM05D002063 ORTHO05D002075 2.4e-08 63.5 247 30.4
BraA08t34475Z Brassica rapa HOM05D002063 ORTHO05D002075 3.1e-08 63.2 200 32.0
Solyc02g076680.3 Solanum lycopersicum HOM05D002063 ORTHO05D002075 5.3e-08 62.4 247 30.0
Cfa023598 Carpinus fangiana HOM05D002063 ORTHO05D002075 7.0e-08 62.0 203 29.6
Rhsim06G0130600 Rhododendron simsii HOM05D002063 ORTHO05D002075 7.0e-08 62.0 222 30.2
Manes.01G132600 Manihot esculenta HOM05D002063 ORTHO05D002075 1.6e-07 60.8 175 30.9
Sed0003403 Sechium edule HOM05D002063 ORTHO05D002075 2.0e-07 60.5 140 36.4
CSS0017486 Camellia sinensis var. sinensis HOM05D002063 ORTHO05D002075 4.5e-07 59.3 222 29.3
Thhalv10016475m.g Eutrema salsugineum HOM05D002063 ORTHO05D002075 4.5e-07 59.3 249 27.3
BcaB03g13896 Brassica carinata HOM05D002063 ORTHO05D002075 5.9e-07 58.9 229 25.8
PGSC0003DMG400010231 Solanum tuberosum HOM05D002063 ORTHO05D002075 5.9e-07 58.9 247 29.1
Haze_13399 Corylus avellana HOM05D002063 ORTHO05D002075 7.7e-07 58.5 106 39.6
CAN.G1716.2 Capsicum annuum HOM05D002063 ORTHO05D002075 1.7e-06 57.4 112 39.3
PSO229G0031 Papaver somniferum HOM05D002063 ORTHO05D002075 1.7e-06 57.4 227 27.8
CiPaw.04G133300 Carya illinoinensis HOM05D002063 ORTHO05D002075 2.2e-06 57.0 234 24.8
Nitab4.5_0006142g0010 Nicotiana tabacum HOM05D002063 ORTHO05D002075 2.2e-06 57.0 110 40.9
BraA07t28875Z Brassica rapa HOM05D002063 ORTHO05D002075 3.8e-06 56.2 190 27.9
CiPaw.03G194900 Carya illinoinensis HOM05D002063 ORTHO05D002075 3.8e-06 56.2 172 28.5
PSO675G5163 Papaver somniferum HOM05D002063 ORTHO05D002075 6.5e-06 55.5 227 26.9
Nitab4.5_0005828g0030 Nicotiana tabacum HOM05D002063 ORTHO05D002075 8.5e-06 55.1 110 40.0


User provided reference genes

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