Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.0e-51 206.5 104 100.0
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.9e-42 175.6 104 85.6
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.5e-39 166.0 101 79.2
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 1.7e-38 162.5 103 74.8
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 4.3e-34 147.9 104 72.1
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 3.7e-33 144.8 102 70.6
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 1.1e-32 143.3 102 70.6
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 5.3e-32 141.0 104 66.3
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 1.2e-31 139.8 103 69.9
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 1.5e-31 139.4 101 67.3
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 2.0e-31 139.0 102 67.6
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 2.6e-31 138.7 104 68.3
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 2.6e-31 138.7 104 68.3
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 2.6e-31 138.7 103 70.9
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 2.6e-31 138.7 104 66.3
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.4e-31 138.3 104 68.3
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 3.4e-31 138.3 104 68.3
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.5e-31 137.9 104 65.4
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.6e-31 137.1 103 66.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 1.0e-30 136.7 104 66.3
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 1.0e-30 136.7 104 70.2
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-30 136.0 104 66.3
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-30 136.0 104 66.3
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.7e-30 136.0 104 66.3
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.7e-30 136.0 104 66.3
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.2e-30 135.6 104 65.4
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 2.2e-30 135.6 104 65.4
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.2e-30 135.6 103 68.0
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 3.8e-30 134.8 104 65.4
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 3.8e-30 134.8 104 65.4
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 4.9e-30 134.4 104 64.4
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 4.9e-30 134.4 104 64.4
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 4.9e-30 134.4 104 64.4
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 4.9e-30 134.4 104 64.4
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 8.4e-30 133.7 104 64.4
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 8.4e-30 133.7 102 66.7
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 1.4e-29 132.9 102 62.7
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.5e-29 132.1 104 64.4
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 2.5e-29 132.1 103 63.1
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 3.2e-29 131.7 104 63.5
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.2e-29 131.7 104 63.5
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 3.2e-29 131.7 104 62.5
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 4.2e-29 131.3 100 67.0
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 5.5e-29 131.0 104 62.5
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 9.3e-29 130.2 104 62.5
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.2e-28 129.8 104 62.5
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 3.5e-28 128.3 98 66.3
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 3.5e-28 128.3 101 62.4
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 1.0e-27 126.7 102 62.7
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 2.3e-27 125.6 104 62.5
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 2.3e-27 125.6 104 63.5
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 3.0e-27 125.2 101 64.4
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 3.9e-27 124.8 103 60.2
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 3.9e-27 124.8 97 63.9
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 3.9e-27 124.8 104 59.6
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 8.7e-27 123.6 102 61.8
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 8.7e-27 123.6 104 63.5
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.1e-26 123.2 102 62.7
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.1e-26 123.2 103 59.2
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 2.5e-26 122.1 96 65.6
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 2.5e-26 122.1 103 60.2
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 3.3e-26 121.7 101 62.4
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 5.7e-26 120.9 104 58.7
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 5.7e-26 120.9 103 58.3
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 9.6e-26 120.2 101 61.4
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 9.6e-26 120.2 103 58.3
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 1.3e-25 119.8 102 58.8
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 4.8e-25 117.9 94 64.9
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.1e-24 116.7 104 59.6
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.1e-24 116.7 104 58.7
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 1.4e-24 116.3 105 57.1
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 1.4e-24 116.3 104 58.7
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 1.4e-24 116.3 104 58.7
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.4e-24 116.3 93 67.7
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.8e-24 115.9 102 61.8
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 2.4e-24 115.5 95 62.1
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 3.1e-24 115.2 96 62.5
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 4.1e-24 114.8 104 57.7
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.1e-24 114.8 98 59.2
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 6.9e-24 114.0 94 62.8
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.9e-24 114.0 104 55.8
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.2e-23 113.2 104 56.7
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 2.0e-23 112.5 104 55.8
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.6e-23 112.1 101 55.4
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 7.6e-23 110.5 78 74.4
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.0e-22 110.2 92 62.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.0e-22 110.2 102 59.8
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.0e-22 110.2 90 66.7
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 3.8e-22 108.2 100 56.0
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.9e-21 105.9 92 62.0
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 2.1e-20 102.4 104 56.7
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.8e-19 99.4 95 53.7
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 2.3e-19 99.0 101 54.5
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 2.5e-18 95.5 80 58.8
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 4.3e-18 94.7 79 60.8
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 5.7e-18 94.4 84 58.3
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.8e-17 91.3 84 56.0
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 2.4e-16 89.0 104 50.0
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 2.4e-16 89.0 97 51.5
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 5.3e-16 87.8 86 51.2
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 9.0e-16 87.0 89 52.8
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 7.7e-15 84.0 78 57.7
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.2e-14 82.4 83 50.6
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.2e-14 82.4 83 50.6
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 8.5e-14 80.5 85 51.8
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.1e-13 80.1 81 50.6
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 1.4e-13 79.7 79 53.2
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.4e-13 79.7 90 48.9
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 7.2e-13 77.4 70 58.6
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 7.2e-13 77.4 87 48.3
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.2e-12 76.6 85 48.2
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.6e-12 76.3 78 51.3
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.6e-12 76.3 78 51.3
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 2.7e-12 75.5 63 63.5
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 4.6e-12 74.7 74 51.4
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 6.1e-12 74.3 67 55.2
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 6.1e-12 74.3 78 51.3
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.0e-11 73.6 73 54.8
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 1.0e-11 73.6 78 48.7
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 1.0e-11 73.6 68 57.4
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.4e-11 73.2 74 50.0
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 1.8e-11 72.8 78 50.0
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 2.3e-11 72.4 62 58.1
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 3.9e-11 71.6 70 55.7
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 8.8e-11 70.5 92 46.7
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.1e-10 70.1 62 56.5
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 1.5e-10 69.7 76 46.1
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 2.0e-10 69.3 104 38.5
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 2.0e-10 69.3 98 41.8
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 2.0e-10 69.3 70 51.4
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 3.3e-10 68.6 90 43.3
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 4.3e-10 68.2 62 51.6
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 5.7e-10 67.8 89 46.1
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 7.4e-10 67.4 77 46.8
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 7.4e-10 67.4 77 46.8
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 9.7e-10 67.0 82 42.7
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.2e-09 65.9 97 40.2
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.2e-09 65.9 87 44.8
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.2e-09 65.9 87 44.8
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 3.7e-09 65.1 97 39.2
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 3.7e-09 65.1 75 46.7
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 4.8e-09 64.7 87 44.8
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 8.2e-09 63.9 68 50.0
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.1e-08 63.5 63 47.6
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.4e-08 62.4 70 44.3
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 2.4e-08 62.4 75 45.3
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.4e-08 62.4 75 45.3
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 5.3e-08 61.2 69 43.5
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 5.3e-08 61.2 63 46.0
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 2.6e-07 58.9 61 54.1
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.6e-07 58.9 76 43.4
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 2.6e-07 58.9 93 40.9
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 3.4e-07 58.5 76 36.8
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 3.4e-07 58.5 69 46.4
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 4.5e-07 58.2 89 40.4
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 5.9e-07 57.8 63 54.0
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 5.9e-07 57.8 63 54.0
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 5.9e-07 57.8 63 54.0
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 5.9e-07 57.8 63 54.0
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 5.9e-07 57.8 63 54.0
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.0e-06 57.0 84 40.5
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.3e-06 56.6 68 48.5
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.7e-06 56.2 73 47.9
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.9e-06 55.5 47 57.4
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 8.5e-06 53.9 48 56.2


User provided reference genes

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