Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 0.0e+00 2364.0 1189 100.0
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 0.0e+00 2216.0 1189 93.9
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 0.0e+00 2209.9 1189 93.3
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 0.0e+00 2154.8 1201 89.9
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 2130.9 1201 89.0
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 0.0e+00 2130.9 1201 89.0
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 0.0e+00 2104.7 1202 87.9
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 0.0e+00 2091.6 1201 87.4
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 2089.3 1201 87.4
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 2019.6 1201 84.6
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 0.0e+00 2019.6 1201 84.6
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 0.0e+00 1916.0 1204 79.8
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 0.0e+00 1911.3 1204 79.9
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1880.1 1201 78.9
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 0.0e+00 1878.6 1202 79.4
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 0.0e+00 1877.1 1200 78.3
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 0.0e+00 1876.7 1204 78.8
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 0.0e+00 1872.4 1206 78.9
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 0.0e+00 1869.7 1205 78.8
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 0.0e+00 1869.4 1203 78.5
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 0.0e+00 1868.6 1205 78.8
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1865.5 1216 77.2
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 0.0e+00 1861.3 1294 73.6
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 0.0e+00 1860.5 1205 78.6
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1855.5 1216 77.1
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1854.3 1207 77.7
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 0.0e+00 1848.9 1201 77.7
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 0.0e+00 1847.8 1203 77.5
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 0.0e+00 1845.9 1211 77.3
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1845.5 1216 76.4
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 0.0e+00 1839.3 1203 76.7
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1827.8 1198 77.0
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1815.0 1207 76.5
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 0.0e+00 1811.6 1202 75.8
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 0.0e+00 1801.2 1199 76.1
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 0.0e+00 1796.2 1204 74.9
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 0.0e+00 1795.4 1131 80.0
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1795.4 1208 75.9
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 0.0e+00 1795.0 1198 76.1
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1791.5 1205 75.9
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 0.0e+00 1783.1 1192 75.4
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 0.0e+00 1779.2 1208 74.7
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 0.0e+00 1778.5 1205 74.6
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1771.1 1288 71.6
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 0.0e+00 1771.1 1288 71.6
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 0.0e+00 1771.1 1201 74.4
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 0.0e+00 1764.6 1201 74.1
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 0.0e+00 1763.8 1201 74.2
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 0.0e+00 1761.9 1201 73.9
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 0.0e+00 1759.6 1288 70.7
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 0.0e+00 1758.8 1201 74.0
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1756.9 1201 73.8
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 0.0e+00 1753.8 1201 73.6
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 0.0e+00 1753.4 1201 73.6
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 0.0e+00 1752.3 1201 73.5
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 0.0e+00 1750.7 1201 73.2
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 0.0e+00 1750.7 1205 73.3
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1748.8 1221 74.4
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 0.0e+00 1747.3 1209 73.2
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 0.0e+00 1745.3 1207 74.1
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 0.0e+00 1744.2 1200 74.5
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 0.0e+00 1740.3 1205 73.9
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 0.0e+00 1731.5 1207 73.1
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 0.0e+00 1728.8 1200 73.8
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 0.0e+00 1726.8 1201 72.4
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 0.0e+00 1726.5 1199 74.0
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 0.0e+00 1725.3 1200 73.8
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 0.0e+00 1720.7 1204 71.7
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1713.4 1206 71.8
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 0.0e+00 1713.0 1203 72.7
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 0.0e+00 1710.7 1345 67.7
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1708.0 1199 71.7
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 0.0e+00 1706.8 1199 72.1
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1704.1 1205 72.2
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 0.0e+00 1701.4 1236 72.3
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1699.9 1200 71.5
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 0.0e+00 1697.9 1102 78.2
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1696.4 1199 72.2
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 0.0e+00 1692.9 1201 71.8
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 0.0e+00 1669.8 1217 69.8
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1651.3 1189 70.6
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 0.0e+00 1644.0 1204 70.1
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 0.0e+00 1624.8 1203 70.5
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 0.0e+00 1595.9 1205 68.5
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 0.0e+00 1581.2 1038 77.5
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 0.0e+00 1577.8 1210 66.8
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 0.0e+00 1561.2 1010 78.2
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 0.0e+00 1535.8 1191 67.3
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 0.0e+00 1535.0 1046 74.4
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 0.0e+00 1532.3 1202 64.7
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1530.0 1046 74.2
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 0.0e+00 1529.2 1194 65.2
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 0.0e+00 1526.5 979 78.2
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 0.0e+00 1507.7 983 78.2
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 0.0e+00 1504.2 1211 63.7
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 0.0e+00 1451.0 997 73.5
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 0.0e+00 1441.4 1024 72.9
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 0.0e+00 1390.9 1061 67.1
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 0.0e+00 1370.1 901 77.5
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 0.0e+00 1338.6 933 72.7
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 0.0e+00 1291.9 819 79.2
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 0.0e+00 1271.5 1216 55.1
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 0.0e+00 1210.3 1229 52.6
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 0.0e+00 1186.4 864 68.9
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 0.0e+00 1118.6 904 64.2
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 0.0e+00 1076.2 1213 49.1
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 8.1e-312 1073.5 1220 49.1
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.2e-266 922.2 1195 43.1
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 1.1e-261 907.5 1328 40.9
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.9e-242 843.6 1229 41.6
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 7.4e-239 831.6 519 81.5
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.4e-223 779.2 1137 41.3
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 7.5e-223 778.5 424 93.9
TPR.G38909 Trifolium pratense HOM05D004589 ORTHO05D005848 3.2e-218 763.1 421 90.0
TPR.G38939 Trifolium pratense HOM05D004589 ORTHO05D005848 1.4e-173 614.8 322 94.4
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.4e-173 614.0 487 68.6
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.3e-147 528.5 751 42.1
Cpa.g.sc187.29 Carica papaya HOM05D004589 ORTHO05D005848 1.7e-142 511.5 306 82.7
Medtr7g069440 Medicago truncatula HOM05D004589 ORTHO05D005848 3.4e-135 487.3 391 67.5
Gohir.D07G034250 Gossypium hirsutum HOM05D004589 ORTHO05D005848 1.5e-127 461.8 351 68.4
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 4.5e-127 460.3 329 74.2
SEGI_04045 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.5e-125 454.5 321 68.8
Hma1.2p1_0167F.1_g073630 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 2.0e-111 408.3 292 72.3
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 3.0e-99 367.9 383 52.5
unitig_32.g11113 Utricularia gibba HOM05D004589 ORTHO05D005848 3.7e-97 360.9 315 60.3
HPP92_024789 Vanilla planifolia HOM05D004589 ORTHO05D005848 4.3e-85 320.9 257 65.8
AagrBONN_evm.TU.Sc2ySwM_368.2737 Anthoceros agrestis HOM05D004589 ORTHO05D005848 3.6e-84 317.8 300 53.0
Zm00001eb426010 Zea mays HOM05D004589 ORTHO05D005848 3.5e-63 248.1 272 51.1
arahy.Tifrunner.gnm1.ann1.6TA6W9 Arachis hypogaea HOM05D004589 ORTHO05D005848 2.4e-59 235.3 159 73.0
TAR383G0934 Trochodendron aralioides HOM05D004589 ORTHO05D005848 1.2e-58 233.0 164 70.7
Zm00001eb426000 Zea mays HOM05D004589 ORTHO05D005848 5.8e-50 204.1 142 74.6
MD08G1153900 Malus domestica HOM05D004589 ORTHO05D005848 3.9e-46 191.4 116 78.4
CSS0039966 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 2.8e-44 185.3 208 52.4
HPP92_020311 Vanilla planifolia HOM05D004589 ORTHO05D005848 8.1e-44 183.7 190 54.2
Cre07.g316100 Chlamydomonas reinhardtii HOM05D004589 ORTHO05D005848 1.4e-43 183.0 732 25.8
HPP92_024790 Vanilla planifolia HOM05D004589 ORTHO05D005848 3.4e-42 178.3 138 60.1
Cpa.g.sc187.28 Carica papaya HOM05D004589 ORTHO05D005848 2.2e-41 175.6 117 68.4
SMO361G0808 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 1.8e-38 166.0 267 40.1
arahy.Tifrunner.gnm1.ann1.6PY749 Arachis hypogaea HOM05D004589 ORTHO05D005848 8.7e-38 163.7 159 55.3
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 9.3e-32 143.7 83 84.3
TWI34G0107 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 4.6e-31 141.4 162 53.1
SEGI_40067 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.6e-18 99.0 71 64.8
SMO164G0067 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 6.5e-17 94.4 233 32.2
Atru.chr7.2501 Acer truncatum HOM05D004589 ORTHO05D005848 1.6e-15 89.7 59 71.2
Sp3g28070 Schrenkiella parvula HOM05D004589 ORTHO05D005848 1.6e-15 89.7 62 69.4
RcHm_v2.0_Chr2g0096161 Rosa chinensis HOM05D004589 ORTHO05D005848 5.7e-13 81.3 47 76.6
arahy.Tifrunner.gnm1.ann1.E2IMN8 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.8e-12 78.2 52 69.2
A02p00800 Brassica napus HOM05D004589 ORTHO05D023960 6.3e-12 77.8 76 59.2
C02p04820 Brassica napus HOM05D004589 ORTHO05D023960 6.9e-11 74.3 74 62.2
BolC2t06439H Brassica oleracea HOM05D004589 ORTHO05D023960 6.9e-11 74.3 74 62.2
Cc00_g21220 Coffea canephora HOM05D004589 ORTHO05D005848 5.0e-09 68.2 55 60.0
GSVIVG01037947001 Vitis vinifera HOM05D004589 ORTHO05D005848 1.1e-08 67.0 38 78.9
Sabra19G0134500 Salix brachista HOM05D001978 ORTHO05D000005 1.4e-08 66.6 70 50.0
Nn4g24965 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.8e-06 59.7 45 64.4


User provided reference genes

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