Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12957_v3 Cicer arietinum L. HOM05D004282 ORTHO05D149096 1.8e-35 152.1 84 100.0
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 2.1e-18 95.5 84 64.3
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 1.6e-15 85.9 49 79.6
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 1.6e-15 85.9 49 79.6
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 8.1e-15 83.6 49 77.6
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 3.1e-14 81.6 49 75.5
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 8.4e-12 73.6 49 69.4
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 1.9e-11 72.4 49 67.3
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 1.9e-11 72.4 48 68.8
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 7.1e-11 70.5 48 66.7
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 9.2e-11 70.1 49 63.3
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 6.0e-10 67.4 48 64.6
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 7.8e-10 67.0 49 57.1
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.0e-09 66.6 49 55.1
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 1.0e-09 66.6 48 62.5
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.3e-09 66.2 47 66.0
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.3e-09 66.2 47 66.0
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 3.0e-09 65.1 47 63.8
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 5.1e-09 64.3 47 63.8
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 5.1e-09 64.3 47 61.7
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 6.6e-09 63.9 48 58.3
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 6.6e-09 63.9 61 47.5
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 1.5e-08 62.8 47 61.7
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.9e-08 62.4 47 59.6
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 1.9e-08 62.4 47 61.7
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.9e-08 62.4 47 63.8
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.9e-08 62.4 47 59.6
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 2.5e-08 62.0 47 57.4
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 3.3e-08 61.6 47 59.6
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 3.3e-08 61.6 47 57.4
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 4.3e-08 61.2 47 59.6
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 5.6e-08 60.8 47 61.7
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 5.6e-08 60.8 47 59.6
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 5.6e-08 60.8 47 57.4
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 7.3e-08 60.5 48 58.3
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 7.3e-08 60.5 48 58.3
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 7.3e-08 60.5 47 57.4
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 7.3e-08 60.5 47 61.7
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 7.3e-08 60.5 48 58.3
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 9.6e-08 60.1 59 47.5
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 9.6e-08 60.1 49 55.1
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 9.6e-08 60.1 59 45.8
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 9.6e-08 60.1 47 59.6
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 1.2e-07 59.7 47 53.2
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 1.2e-07 59.7 47 53.2
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 1.2e-07 59.7 47 57.4
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 1.2e-07 59.7 47 57.4
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.2e-07 59.7 47 61.7
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 1.6e-07 59.3 49 53.1
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 1.6e-07 59.3 49 53.1
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 1.6e-07 59.3 59 47.5
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 2.1e-07 58.9 47 59.6
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 2.1e-07 58.9 59 45.8
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 2.1e-07 58.9 47 59.6
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 2.1e-07 58.9 47 57.4
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 2.1e-07 58.9 47 53.2
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 4.7e-07 57.8 49 51.0
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 4.7e-07 57.8 47 51.1
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 4.7e-07 57.8 47 59.6
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 6.2e-07 57.4 59 42.4
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 1.1e-06 56.6 47 51.1
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 1.4e-06 56.2 47 51.1
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 1.4e-06 56.2 49 53.1
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 1.4e-06 56.2 47 51.1
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 1.4e-06 56.2 47 55.3
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 1.4e-06 56.2 46 56.5
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.8e-06 55.8 47 53.2
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 3.1e-06 55.1 49 51.0
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 3.1e-06 55.1 49 51.0
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 3.1e-06 55.1 50 52.0
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 3.1e-06 55.1 47 53.2
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 3.1e-06 55.1 47 48.9
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 4.0e-06 54.7 47 53.2
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 4.0e-06 54.7 49 51.0
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 4.0e-06 54.7 47 53.2
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 4.0e-06 54.7 49 51.0
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 5.2e-06 54.3 49 49.0
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 5.2e-06 54.3 47 51.1
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 5.2e-06 54.3 47 53.2
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 6.9e-06 53.9 47 55.3
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 9.0e-06 53.5 47 48.9


User provided reference genes

Program Settings