Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.3e-261 904.8 563 100.0
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 8.0e-167 591.3 556 70.7
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 3.5e-138 496.1 548 65.3
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.4e-115 420.2 570 54.0
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 4.5e-109 399.4 568 56.9
Medtr1g010090 Medicago truncatula HOM05D004041 ORTHO05D004564 1.5e-93 347.8 429 62.7
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.6e-90 337.8 584 54.6
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 2.7e-74 283.9 216 74.1
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.4e-73 281.6 252 67.5
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.3e-73 280.8 441 49.2
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 8.8e-73 278.9 225 70.2
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 8.2e-71 272.3 457 48.8
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 5.7e-64 249.6 213 64.8
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 9.7e-64 248.8 212 65.1
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 1.8e-62 244.6 202 67.8
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 4.5e-61 240.0 200 66.5
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 5.5e-59 233.0 223 61.4
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 9.4e-59 232.3 202 62.9
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.2e-58 231.9 257 54.5
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 2.3e-57 227.6 259 52.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 6.8e-57 226.1 259 54.4
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.6e-56 224.2 193 64.2
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.4e-56 223.8 203 61.6
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.7e-55 221.5 218 61.0
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 3.7e-55 220.3 231 56.7
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.7e-55 220.3 221 60.2
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.8e-54 218.0 207 59.9
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.8e-54 218.0 214 60.7
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 2.9e-52 210.7 208 59.1
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.5e-51 207.6 211 57.3
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 2.5e-51 207.6 214 57.5
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 2.5e-51 207.6 202 60.9
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.2e-50 205.3 207 58.0
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.2e-50 205.3 170 66.5
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.7e-50 203.4 207 57.5
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 8.0e-50 202.6 198 59.6
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 8.0e-50 202.6 293 48.8
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 1.0e-49 202.2 211 56.9
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.0e-49 202.2 211 56.9
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.0e-49 202.2 261 51.0
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.4e-49 201.8 259 49.0
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.4e-49 201.8 254 53.1
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.4e-49 201.8 146 74.7
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.8e-49 201.4 232 53.4
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.3e-49 201.1 202 57.4
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.0e-49 200.7 113 92.0
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.5e-48 198.4 222 55.9
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 3.4e-48 197.2 230 55.7
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.4e-48 197.2 161 68.3
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 7.5e-48 196.1 266 50.0
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 9.8e-48 195.7 113 90.3
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.3e-47 195.3 163 68.7
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.7e-47 194.9 224 53.6
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.2e-47 194.5 224 55.8
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.2e-47 194.5 216 56.5
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 3.7e-47 193.7 209 57.4
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.7e-47 193.7 216 56.0
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.7e-47 193.7 160 66.9
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 4.9e-47 193.4 145 72.4
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 6.3e-47 193.0 140 74.3
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 1.4e-46 191.8 231 54.1
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 2.4e-46 191.0 223 52.9
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 3.1e-46 190.7 261 50.6
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 3.1e-46 190.7 261 50.6
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 5.4e-46 189.9 194 59.8
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 5.4e-46 189.9 113 87.6
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 7.0e-46 189.5 225 52.4
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 7.0e-46 189.5 225 52.4
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 7.0e-46 189.5 140 72.9
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.6e-45 188.3 267 48.3
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 2.7e-45 187.6 221 53.4
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 4.5e-45 186.8 225 53.8
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 5.9e-45 186.4 210 53.3
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.3e-44 185.3 643 37.3
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 2.9e-44 184.1 219 52.5
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.0e-44 183.3 152 68.4
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.6e-44 183.0 210 54.8
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 1.5e-43 181.8 266 47.7
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.9e-43 181.4 216 53.7
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 2.5e-43 181.0 226 52.7
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.5e-43 181.0 286 46.5
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 3.3e-43 180.6 210 53.8
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 4.2e-43 180.3 231 51.5
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.5e-43 179.1 152 67.1
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.6e-42 178.3 270 44.4
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.6e-42 178.3 145 66.2
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.1e-42 177.9 158 63.3
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 3.6e-42 177.2 150 64.0
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 6.1e-42 176.4 208 52.4
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 6.1e-42 176.4 208 52.4
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 6.1e-42 176.4 113 81.4
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.4e-41 175.3 548 40.7
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.4e-41 175.3 145 65.5
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 2.3e-41 174.5 144 66.0
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 7.5e-40 169.5 250 47.2
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.7e-39 168.3 142 64.1
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 2.9e-39 167.5 226 48.7
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.9e-39 167.5 227 49.3
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 3.7e-39 167.2 219 51.1
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.9e-39 166.8 139 61.9
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 6.4e-39 166.4 100 88.0
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 8.3e-39 166.0 112 75.9
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 2.4e-38 164.5 103 80.6
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.4e-38 164.5 127 69.3
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 9.2e-38 162.5 118 78.0
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.6e-37 161.8 146 58.2
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 2.7e-37 161.0 200 55.0
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 3.5e-37 160.6 118 71.2
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 7.8e-37 159.5 105 77.1
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 7.8e-37 159.5 139 62.6
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 5.0e-36 156.8 102 74.5
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.1e-35 155.6 139 56.8
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.9e-35 154.8 115 77.4
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 9.5e-35 152.5 142 59.2
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.6e-34 150.6 115 74.8
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.8e-33 148.3 218 46.3
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.0e-33 147.1 132 65.2
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 8.9e-33 146.0 162 53.7
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 2.2e-31 141.4 90 73.3
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.1e-30 139.0 186 53.2
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.4e-30 137.9 154 53.9
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 5.4e-30 136.7 94 75.5
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 3.9e-28 130.6 80 78.8
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 8.6e-28 129.4 103 64.1
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 8.6e-28 129.4 170 51.2
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.5e-27 128.6 142 55.6
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.5e-27 128.6 142 55.6
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 3.3e-27 127.5 160 48.8
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 3.3e-27 127.5 239 39.7
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.6e-26 125.2 111 61.3
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.2e-25 120.2 142 54.2
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.5e-24 118.6 186 47.8
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.0e-24 118.2 109 56.9
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.3e-23 115.5 113 54.9
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.4e-22 112.1 108 57.4
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.9e-22 111.7 105 59.0
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.2e-21 109.0 108 56.5
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.2e-21 109.0 105 57.1
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.6e-21 108.6 102 54.9
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.6e-21 108.6 100 59.0
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.7e-21 107.8 135 51.9
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 4.6e-21 107.1 100 58.0
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 6.0e-21 106.7 100 58.0
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 7.8e-21 106.3 166 41.0
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.0e-20 105.9 104 57.7
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 1.7e-20 105.1 207 41.5
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.7e-20 105.1 103 58.3
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 4.3e-19 100.5 52 90.4
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.3e-19 99.8 104 55.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 1.6e-18 98.6 105 49.5
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 4.7e-18 97.1 107 54.2
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.1e-18 96.3 164 43.9
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 4.4e-16 90.5 60 83.3
arahy.Tifrunner.gnm1.ann1.EPLR59 Arachis hypogaea HOM05D004041 ORTHO05D004564 4.1e-14 84.0 83 61.4
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 7.1e-14 83.2 151 40.4
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 9.2e-14 82.8 104 48.1
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 2.1e-13 81.6 144 36.1
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 1.3e-12 79.0 67 65.7
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.7e-12 78.6 110 41.8
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.3e-12 78.2 93 43.0
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.1e-11 75.9 78 57.7
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.6e-10 72.0 154 40.9
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.1e-09 69.3 67 53.7
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 6.8e-09 66.6 62 56.5
TAR626G1323 Trochodendron aralioides HOM05D004041 ORTHO05D004564 7.1e-06 56.6 124 41.9
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 9.3e-06 56.2 55 50.9


User provided reference genes

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