Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.6e-87 326.2 188 100.0
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 6.6e-57 224.6 186 74.2
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 3.3e-56 222.2 186 69.4
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 3.0e-54 215.7 183 72.7
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 4.1e-51 205.3 185 65.9
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 2.7e-50 202.6 185 71.4
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 2.7e-50 202.6 186 68.8
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 7.3e-48 194.5 192 63.5
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.6e-47 193.4 152 80.3
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 6.8e-46 188.0 185 61.1
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 4.4e-45 185.3 186 67.7
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 6.4e-44 181.4 187 63.6
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 1.6e-42 176.8 185 60.5
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.2e-39 167.2 121 72.7
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.6e-33 144.8 126 62.7
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.5e-32 142.9 185 52.4
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.6e-31 140.2 185 54.1
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 4.7e-31 138.7 185 53.0
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 4.7e-31 138.7 123 63.4
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 6.2e-31 138.3 187 56.1
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 8.1e-31 137.9 189 54.5
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.1e-30 137.5 186 48.9
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.4e-30 137.1 188 52.1
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 3.1e-30 136.0 185 56.2
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 4.0e-30 135.6 186 56.5
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.8e-30 134.8 123 59.3
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 6.8e-30 134.8 185 53.0
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 6.8e-30 134.8 186 54.8
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 8.9e-30 134.4 114 62.3
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 8.9e-30 134.4 186 54.8
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.2e-29 134.0 121 56.2
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.2e-29 134.0 117 61.5
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.0e-29 133.3 121 62.0
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 2.6e-29 132.9 183 53.0
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 4.4e-29 132.1 121 59.5
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 1.3e-28 130.6 185 54.6
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.3e-28 130.6 122 59.0
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 1.3e-28 130.6 123 57.7
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.3e-28 130.6 184 54.9
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 1.7e-28 130.2 118 61.9
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 2.2e-28 129.8 111 64.0
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 2.2e-28 129.8 205 53.2
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 2.9e-28 129.4 122 57.4
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 6.4e-28 128.3 183 52.5
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 8.4e-28 127.9 112 62.5
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 8.4e-28 127.9 189 54.5
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.1e-27 127.5 187 53.5
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.1e-27 127.5 191 53.9
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 1.4e-27 127.1 127 55.9
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 2.4e-27 126.3 186 53.2
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 3.2e-27 125.9 186 54.3
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 4.1e-27 125.6 119 58.0
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 5.4e-27 125.2 121 59.5
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 5.4e-27 125.2 112 62.5
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 5.4e-27 125.2 185 53.5
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 7.1e-27 124.8 185 53.5
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 9.2e-27 124.4 109 63.3
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.6e-26 123.6 122 59.8
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.6e-26 123.6 187 46.5
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.6e-26 123.6 129 58.1
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.1e-26 123.2 122 59.0
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 2.7e-26 122.9 121 57.9
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 3.5e-26 122.5 185 48.1
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 2.3e-25 119.8 122 59.0
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 2.3e-25 119.8 112 57.1
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 2.3e-25 119.8 186 53.2
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 3.9e-25 119.0 130 56.2
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 3.9e-25 119.0 185 54.1
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 3.9e-25 119.0 109 57.8
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 5.1e-25 118.6 103 64.1
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 8.6e-25 117.9 116 57.8
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 1.1e-24 117.5 112 57.1
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.1e-24 117.5 186 47.8
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.5e-24 117.1 112 54.5
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.5e-24 117.1 112 54.5
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.9e-24 116.7 187 46.0
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.9e-24 116.7 105 61.9
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 2.5e-24 116.3 114 57.9
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.3e-24 115.9 186 43.5
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 3.3e-24 115.9 99 64.6
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 4.3e-24 115.5 188 47.3
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 4.3e-24 115.5 186 51.6
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 5.6e-24 115.2 114 59.6
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 9.6e-24 114.4 187 48.7
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 9.6e-24 114.4 187 49.7
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.2e-23 114.0 103 62.1
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.1e-23 113.2 118 54.2
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 3.6e-23 112.5 116 55.2
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 4.7e-23 112.1 193 43.0
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 4.7e-23 112.1 202 48.0
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 8.1e-23 111.3 121 50.4
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 8.1e-23 111.3 206 49.5
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.4e-22 110.5 122 60.7
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 1.4e-22 110.5 190 47.9
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.4e-22 110.5 111 56.8
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 2.4e-22 109.8 186 41.9
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 2.4e-22 109.8 155 56.8
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.1e-22 109.4 126 63.5
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 3.1e-22 109.4 113 55.8
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 9.0e-22 107.8 103 57.3
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 9.0e-22 107.8 185 50.8
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.2e-21 107.5 108 54.6
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.2e-21 107.5 186 43.5
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 7.6e-21 104.8 199 40.7
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.7e-20 103.6 192 43.8
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 1.7e-20 103.6 149 56.4
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.7e-20 103.6 189 48.7
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 4.9e-20 102.1 189 50.8
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 4.9e-20 102.1 159 45.3
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 8.4e-20 101.3 94 60.6
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.1e-19 100.9 72 72.2
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.4e-19 100.5 107 56.1
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 1.4e-19 100.5 74 70.3
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 3.2e-19 99.4 107 54.2
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 3.2e-19 99.4 77 67.5
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 3.2e-19 99.4 77 67.5
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 3.2e-19 99.4 77 67.5
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 5.4e-19 98.6 76 68.4
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 5.4e-19 98.6 76 68.4
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 5.4e-19 98.6 94 56.4
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 2.7e-18 96.3 76 67.1
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 2.7e-18 96.3 94 54.3
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 3.5e-18 95.9 76 65.8
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.5e-18 95.9 196 45.4
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 6.0e-18 95.1 93 54.8
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 6.0e-18 95.1 93 54.8
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 7.8e-18 94.7 162 50.6
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.3e-17 94.0 76 64.5
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 1.3e-17 94.0 76 64.5
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 1.3e-17 94.0 76 64.5
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.3e-17 94.0 76 64.5
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.3e-17 94.0 93 53.8
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 1.7e-17 93.6 76 65.8
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 2.3e-17 93.2 92 57.6
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 2.3e-17 93.2 92 57.6
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 2.3e-17 93.2 92 57.6
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.9e-16 90.1 199 47.2
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.5e-16 89.7 63 74.6
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 7.3e-16 88.2 117 47.0
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.6e-15 87.0 58 79.3
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 3.6e-15 85.9 167 40.1
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 6.2e-15 85.1 105 48.6
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 5.8e-13 78.6 140 55.7
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 2.4e-11 73.2 62 61.3
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 5.4e-11 72.0 125 39.2
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 6.0e-10 68.6 87 50.6
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 7.9e-10 68.2 52 69.2
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.3e-09 67.4 47 70.2
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 9.6e-08 61.2 102 40.2
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 4.8e-07 58.9 96 39.6
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 4.0e-06 55.8 69 47.8


User provided reference genes

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