Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 1.2e-152 544.3 625 100.0
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 9.4e-84 315.5 638 72.3
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 2.8e-56 224.2 637 74.4
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 7.8e-46 189.5 604 75.5
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 3.9e-45 187.2 638 72.7
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 4.3e-44 183.7 638 72.1
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 1.1e-31 142.5 240 60.8
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 1.6e-27 128.6 189 70.4
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 4.7e-27 127.1 234 60.7
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 8.9e-26 122.9 635 66.9
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 1.5e-25 122.1 207 63.8
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.0e-25 121.7 240 57.9
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 3.4e-25 120.9 234 59.8
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 1.7e-24 118.6 249 55.8
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 2.2e-24 118.2 215 61.9
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 4.9e-24 117.1 234 59.8
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 1.1e-23 115.9 187 47.1
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 1.4e-23 115.5 239 58.6
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 3.5e-22 110.9 241 60.2
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 4.6e-22 110.5 240 44.6
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 4.6e-22 110.5 585 71.5
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 6.0e-22 110.2 203 65.5
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.0e-22 110.2 218 60.6
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 1.0e-21 109.4 187 49.2
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 2.3e-21 108.2 233 45.1
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 3.0e-21 107.8 229 59.8
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 3.0e-21 107.8 210 64.3
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.9e-21 107.5 185 66.5
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 5.1e-21 107.1 215 60.9
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 8.7e-21 106.3 245 55.5
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 8.7e-21 106.3 185 65.4
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 8.7e-21 106.3 218 61.0
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.1e-20 105.9 185 54.6
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 1.1e-20 105.9 185 69.2
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 1.1e-20 105.9 211 64.0
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 1.5e-20 105.5 240 40.4
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.5e-20 105.5 208 64.4
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 1.5e-20 105.5 242 54.1
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.5e-20 104.8 185 55.7
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 3.3e-20 104.4 246 31.3
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 3.3e-20 104.4 235 56.2
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 3.3e-20 104.4 208 61.5
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 4.3e-20 104.0 219 59.4
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 4.3e-20 104.0 218 59.6
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 5.6e-20 103.6 218 59.6
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.6e-20 103.6 185 68.1
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 5.6e-20 103.6 185 68.6
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 5.6e-20 103.6 188 68.6
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 7.3e-20 103.2 187 69.0
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 7.3e-20 103.2 185 68.6
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 9.6e-20 102.8 638 64.9
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 1.3e-19 102.4 185 65.4
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.3e-19 102.4 218 59.6
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.3e-19 102.4 208 63.0
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.3e-19 102.4 192 65.6
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 1.3e-19 102.4 178 70.2
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 2.1e-19 101.7 208 61.1
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 2.1e-19 101.7 208 60.6
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 2.8e-19 101.3 188 68.1
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 2.8e-19 101.3 188 68.1
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 2.8e-19 101.3 202 61.4
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 3.6e-19 100.9 201 64.2
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 4.8e-19 100.5 235 56.2
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 6.2e-19 100.1 188 59.0
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.4e-18 99.0 202 62.4
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 2.4e-18 98.2 127 48.0
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 6.9e-18 96.7 187 64.2
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 1.2e-17 95.9 76 59.2
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 1.2e-17 95.9 192 65.6
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.5e-17 95.5 208 61.1
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.5e-17 95.5 216 59.7
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 2.0e-17 95.1 207 60.4
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 4.4e-17 94.0 83 53.0
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 4.4e-17 94.0 194 38.7
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 4.4e-17 94.0 193 32.1
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 5.8e-17 93.6 187 31.6
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 5.8e-17 93.6 201 61.7
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 7.6e-17 93.2 90 48.9
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 7.6e-17 93.2 186 65.1
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 9.9e-17 92.8 194 31.4
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.3e-16 92.4 96 51.0
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.3e-16 92.4 94 48.9
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 1.7e-16 92.0 220 59.1
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 1.7e-16 92.0 79 54.4
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.7e-16 92.0 79 54.4
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 2.2e-16 91.7 195 36.4
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 2.2e-16 91.7 76 60.5
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 2.2e-16 91.7 187 59.4
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 2.2e-16 91.7 187 59.4
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 2.2e-16 91.7 76 60.5
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 2.2e-16 91.7 223 57.4
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 2.9e-16 91.3 185 30.8
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 2.9e-16 91.3 185 64.3
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 4.9e-16 90.5 187 56.1
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 4.9e-16 90.5 207 61.8
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 4.9e-16 90.5 76 55.3
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 6.4e-16 90.1 228 57.9
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 6.4e-16 90.1 118 43.2
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 1.4e-15 89.0 167 73.7
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.4e-15 89.0 186 65.1
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.9e-15 88.6 206 59.2
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 1.9e-15 88.6 190 63.2
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 3.2e-15 87.8 109 45.0
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 4.2e-15 87.4 187 30.5
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 4.2e-15 87.4 93 48.4
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 5.4e-15 87.0 102 49.0
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 5.4e-15 87.0 165 65.5
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 5.4e-15 87.0 188 57.4
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 9.3e-15 86.3 195 60.5
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 1.2e-14 85.9 207 58.9
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 1.6e-14 85.5 70 61.4
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 2.1e-14 85.1 106 44.3
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 3.5e-14 84.3 74 55.4
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 3.5e-14 84.3 214 57.9
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 4.6e-14 84.0 196 56.1
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 4.6e-14 84.0 211 28.0
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 6.0e-14 83.6 188 63.3
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 6.0e-14 83.6 80 52.5
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 7.8e-14 83.2 68 57.4
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 7.8e-14 83.2 75 56.0
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 7.8e-14 83.2 75 56.0
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 7.8e-14 83.2 75 56.0
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 7.8e-14 83.2 185 63.8
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 7.8e-14 83.2 75 56.0
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 7.8e-14 83.2 184 62.5
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 1.0e-13 82.8 204 59.3
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 1.0e-13 82.8 76 55.3
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 1.0e-13 82.8 192 60.4
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 1.3e-13 82.4 75 56.0
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 1.3e-13 82.4 75 56.0
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 1.3e-13 82.4 185 63.8
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 1.3e-13 82.4 189 61.4
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 1.3e-13 82.4 185 63.8
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 1.7e-13 82.0 185 61.1
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 1.7e-13 82.0 166 68.7
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 3.9e-13 80.9 204 59.3
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 8.7e-13 79.7 203 59.6
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 8.7e-13 79.7 203 59.1
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 8.7e-13 79.7 203 59.1
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 1.1e-12 79.3 71 52.1
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 1.1e-12 79.3 193 54.9
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 1.5e-12 79.0 220 55.0
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 1.9e-12 78.6 229 54.6
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.9e-12 78.6 203 59.1
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 5.6e-12 77.0 189 59.3
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 7.3e-12 76.6 67 53.7
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 7.3e-12 76.6 167 65.9
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 9.6e-12 76.3 166 68.7
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 9.6e-12 76.3 207 56.5
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 1.6e-11 75.5 197 57.4
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 8.1e-11 73.2 168 28.6
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 5.3e-10 70.5 166 66.9
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 5.3e-10 70.5 202 57.9
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 5.3e-10 70.5 202 57.9
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 6.9e-10 70.1 70 48.6
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 6.9e-10 70.1 215 54.4
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 6.9e-10 70.1 157 29.9
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 9.0e-10 69.7 244 50.0
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 2.0e-09 68.6 75 48.0
Cpa.g.sc78.81 Carica papaya HOM05D003689 ORTHO05D003950 9.9e-09 66.2 139 36.7
Lj8C603T17 Lonicera japonica HOM05D003689 ORTHO05D003950 2.9e-08 64.7 69 44.9
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 3.8e-08 64.3 79 40.5
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 3.8e-08 64.3 76 44.7
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 4.9e-08 63.9 142 31.7
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 8.4e-08 63.2 98 38.8
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 2.4e-07 61.6 56 55.4
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 2.7e-06 58.2 185 51.9
Sabra06G0189700 Salix brachista HOM05D003689 ORTHO05D003950 2.7e-06 58.2 40 62.5
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 3.5e-06 57.8 203 53.2
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 6.0e-06 57.0 153 28.1


User provided reference genes

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