Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12800_v3 Cicer arietinum L. HOM05D003091 ORTHO05D003671 2.0e-77 292.4 149 100.0
Ca_12810_v3 Cicer arietinum L. HOM05D003091 ORTHO05D003671 3.2e-67 258.5 132 100.0
Psat6g034320 Pisum sativum HOM05D003091 ORTHO05D003671 2.3e-65 252.3 132 97.0
Glyma.06G081900 Glycine max HOM05D003091 ORTHO05D003671 1.3e-63 246.5 132 93.9
Ca_15619_v3 Cicer arietinum L. HOM05D003091 ORTHO05D003671 2.2e-63 245.7 132 93.2
Psat0s3378g0040 Pisum sativum HOM05D003091 ORTHO05D003671 2.2e-63 245.7 132 93.2
TPR.G12114 Trifolium pratense HOM05D003091 ORTHO05D003671 2.8e-63 245.4 132 94.7
TPR.G1379 Trifolium pratense HOM05D003091 ORTHO05D003671 6.3e-63 244.2 135 89.6
Medtr1g008280 Medicago truncatula HOM05D003091 ORTHO05D003671 2.4e-62 242.3 132 93.2
Glyma.04G080200 Glycine max HOM05D003091 ORTHO05D003671 3.1e-62 241.9 132 93.9
CANSAT25G3396 Cannabis sativa HOM05D003091 ORTHO05D003671 4.1e-62 241.5 132 90.2
Thecc.09G249800 Theobroma cacao HOM05D003091 ORTHO05D003671 4.1e-62 241.5 132 89.4
Ciclev10015833m.g Citrus clementina HOM05D003091 ORTHO05D003671 5.4e-62 241.1 132 88.6
COL.COLO4_05198 Corchorus olitorius HOM05D003091 ORTHO05D003671 5.4e-62 241.1 132 90.2
Dinv05057 Davidia involucrata HOM05D003091 ORTHO05D003671 5.4e-62 241.1 132 88.6
Dinv36179 Davidia involucrata HOM05D003091 ORTHO05D003671 7.0e-62 240.7 132 89.4
Gorai.001G134600 Gossypium raimondii HOM05D003091 ORTHO05D003671 7.0e-62 240.7 132 87.9
Lj1g0011096 Lotus japonicus HOM05D003091 ORTHO05D003671 1.6e-61 239.6 132 90.9
Gohir.A07G120600 Gossypium hirsutum HOM05D003091 ORTHO05D003671 3.5e-61 238.4 132 87.1
Haze_21852 Corylus avellana HOM05D003091 ORTHO05D003671 5.9e-61 237.7 132 88.6
Gohir.D07G124800 Gossypium hirsutum HOM05D003091 ORTHO05D003671 5.9e-61 237.7 132 87.1
Actinidia06957 Actinidia chinensis HOM05D003091 ORTHO05D003671 1.0e-60 236.9 132 85.6
Cpa.g.sc84.1 Carica papaya HOM05D003091 ORTHO05D003671 1.0e-60 236.9 132 89.4
Manes.02G140400 Manihot esculenta HOM05D003091 ORTHO05D003671 1.0e-60 236.9 132 87.1
Medtr3g109932 Medicago truncatula HOM05D003091 ORTHO05D003671 1.0e-60 236.9 132 90.2
Lalb_Chr11g0064331 Lupinus albus HOM05D003091 ORTHO05D003671 1.3e-60 236.5 132 90.9
Phvul.009G106300 Phaseolus vulgaris HOM05D003091 ORTHO05D003671 1.3e-60 236.5 132 90.9
Potri.009G071600 Populus trichocarpa HOM05D003091 ORTHO05D003671 1.7e-60 236.1 132 87.9
VMungo1309G1449 Vigna mungo HOM05D003091 ORTHO05D003671 1.7e-60 236.1 132 90.9
GSVIVG01037261001 Vitis vinifera HOM05D003091 ORTHO05D003671 2.3e-60 235.7 132 86.4
Hma1.2p1_0129F.1_g060120 Hydrangea macrophylla HOM05D003091 ORTHO05D003671 2.9e-60 235.3 132 87.9
CiPaw.08G023500 Carya illinoinensis HOM05D003091 ORTHO05D003671 3.8e-60 235.0 132 87.1
PGR054G0002 Punica granatum HOM05D003091 ORTHO05D003671 3.8e-60 235.0 132 87.1
PGR119G0724 Punica granatum HOM05D003091 ORTHO05D003671 3.8e-60 235.0 132 87.1
TWI60G1477 Tripterygium wilfordii HOM05D003091 ORTHO05D003671 5.0e-60 234.6 132 87.9
CAN.G917.5 Capsicum annuum HOM05D003091 ORTHO05D003671 6.6e-60 234.2 132 87.9
Duzib150G1361 Durio zibethinus HOM05D003091 ORTHO05D003671 6.6e-60 234.2 132 86.4
Glyma.14G142100 Glycine max HOM05D003091 ORTHO05D003671 6.6e-60 234.2 132 89.4
arahy.Tifrunner.gnm1.ann1.H5V5GF Arachis hypogaea HOM05D003091 ORTHO05D003671 8.6e-60 233.8 132 89.4
arahy.Tifrunner.gnm1.ann1.IEZM4M Arachis hypogaea HOM05D003091 ORTHO05D003671 8.6e-60 233.8 132 89.4
Cc01_g05530 Coffea canephora HOM05D003091 ORTHO05D003671 8.6e-60 233.8 132 87.1
Duzib168G2072 Durio zibethinus HOM05D003091 ORTHO05D003671 8.6e-60 233.8 132 87.1
Eucgr.J00700 Eucalyptus grandis HOM05D003091 ORTHO05D003671 1.1e-59 233.4 132 87.9
arahy.Tifrunner.gnm1.ann1.0Z0DIR Arachis hypogaea HOM05D003091 ORTHO05D003671 1.5e-59 233.0 132 86.4
arahy.Tifrunner.gnm1.ann1.Y550S7 Arachis hypogaea HOM05D003091 ORTHO05D003671 1.5e-59 233.0 132 86.4
MD15G1097600 Malus domestica HOM05D003091 ORTHO05D003671 1.5e-59 233.0 132 87.1
Sed0002878 Sechium edule HOM05D003091 ORTHO05D003671 1.5e-59 233.0 132 86.4
Gohir.D13G222900 Gossypium hirsutum HOM05D003091 ORTHO05D003671 1.9e-59 232.6 132 86.4
Gohir.D13G223001 Gossypium hirsutum HOM05D003091 ORTHO05D003671 1.9e-59 232.6 132 86.4
Gorai.013G254000 Gossypium raimondii HOM05D003091 ORTHO05D003671 1.9e-59 232.6 132 86.4
CSS0037821 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 2.5e-59 232.3 132 86.4
Cc00_g28510 Coffea canephora HOM05D003091 ORTHO05D003671 2.5e-59 232.3 131 87.0
FvH4_2g36110 Fragaria vesca HOM05D003091 ORTHO05D003671 2.5e-59 232.3 132 86.4
Oeu043280.2 Olea europaea HOM05D003091 ORTHO05D003671 2.5e-59 232.3 132 86.4
Potri.001G276700 Populus trichocarpa HOM05D003091 ORTHO05D003671 2.5e-59 232.3 132 87.1
ClCG11G014020 Citrullus lanatus HOM05D003091 ORTHO05D003671 3.3e-59 231.9 132 86.4
Gohir.D05G074400 Gossypium hirsutum HOM05D003091 ORTHO05D003671 3.3e-59 231.9 132 85.6
Cfa013345 Carpinus fangiana HOM05D003091 ORTHO05D003671 4.3e-59 231.5 132 87.1
CiPaw.07G207100 Carya illinoinensis HOM05D003091 ORTHO05D003671 4.3e-59 231.5 132 84.8
Manes.01G179800 Manihot esculenta HOM05D003091 ORTHO05D003671 4.3e-59 231.5 132 84.1
CSS0001188 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 7.3e-59 230.7 132 84.8
CSS0007409 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 7.3e-59 230.7 132 84.8
CsaV3_3G047430 Cucumis sativus L. HOM05D003091 ORTHO05D003671 7.3e-59 230.7 132 86.4
Gorai.009G075500 Gossypium raimondii HOM05D003091 ORTHO05D003671 7.3e-59 230.7 132 84.8
Prupe.1G452500 Prunus persica HOM05D003091 ORTHO05D003671 7.3e-59 230.7 132 85.6
Solyc11g064790.2 Solanum lycopersicum HOM05D003091 ORTHO05D003671 7.3e-59 230.7 135 85.2
TAR369G0586 Trochodendron aralioides HOM05D003091 ORTHO05D003671 7.3e-59 230.7 132 85.6
Actinidia11659 Actinidia chinensis HOM05D003091 ORTHO05D003671 9.5e-59 230.3 131 86.3
MBI19_g08870_MAGBIO Magnolia biondii HOM05D003091 ORTHO05D003671 9.5e-59 230.3 135 84.4
MD08G1118300 Malus domestica HOM05D003091 ORTHO05D003671 9.5e-59 230.3 132 86.4
Nitab4.5_0001500g0090 Nicotiana tabacum HOM05D003091 ORTHO05D003671 9.5e-59 230.3 132 85.6
TAR633G0445 Trochodendron aralioides HOM05D003091 ORTHO05D003671 9.5e-59 230.3 132 85.6
FAN27G0636 Fragaria x ananassa HOM05D003091 ORTHO05D003671 1.6e-58 229.6 132 85.6
Lalb_Chr08g0243271 Lupinus albus HOM05D003091 ORTHO05D003671 1.6e-58 229.6 132 89.4
Sopen11g024530 Solanum pennellii HOM05D003091 ORTHO05D003671 1.6e-58 229.6 135 85.2
SGA_v2.0_scaffold496G52467 Striga asiatica HOM05D003091 ORTHO05D003671 1.6e-58 229.6 132 86.4
FAN20G1214 Fragaria x ananassa HOM05D003091 ORTHO05D003671 2.1e-58 229.2 132 85.6
RcHm_v2.0_Chr6g0305761 Rosa chinensis HOM05D003091 ORTHO05D003671 2.1e-58 229.2 132 84.1
TAR623G1108 Trochodendron aralioides HOM05D003091 ORTHO05D003671 2.1e-58 229.2 132 86.4
Gohir.A05G071500 Gossypium hirsutum HOM05D003091 ORTHO05D003671 2.8e-58 228.8 132 84.8
Lj1C287G1 Lonicera japonica HOM05D003091 ORTHO05D003671 2.8e-58 228.8 132 86.4
QL12p026400 Quercus lobata HOM05D003091 ORTHO05D003671 3.6e-58 228.4 132 86.4
PGSC0003DMG400022714 Solanum tuberosum HOM05D003091 ORTHO05D003671 4.7e-58 228.0 133 83.5
Peaxi162Scf00032g02617 Petunia axillaris HOM05D003091 ORTHO05D003671 6.1e-58 227.6 132 84.8
Sed0016432 Sechium edule HOM05D003091 ORTHO05D003671 6.1e-58 227.6 132 85.6
Sc16g0011120 Simmondsia chinensis HOM05D003091 ORTHO05D003671 6.1e-58 227.6 132 85.6
Peaxi162Scf00004g04618 Petunia axillaris HOM05D003091 ORTHO05D003671 8.0e-58 227.3 132 86.4
TWI34G0762 Tripterygium wilfordii HOM05D003091 ORTHO05D003671 8.0e-58 227.3 132 85.6
Actinidia23988 Actinidia chinensis HOM05D003091 ORTHO05D003671 1.0e-57 226.9 132 85.6
DCAR_029992 Daucus carota HOM05D003091 ORTHO05D003671 1.4e-57 226.5 132 85.6
Oeu025901.1 Olea europaea HOM05D003091 ORTHO05D003671 1.4e-57 226.5 132 84.8
Hund07443 Selenicereus undatus HOM05D003091 ORTHO05D003671 1.4e-57 226.5 132 84.1
Solyc01g008820.3 Solanum lycopersicum HOM05D003091 ORTHO05D003671 1.4e-57 226.5 135 81.5
Sopen01g004330 Solanum pennellii HOM05D003091 ORTHO05D003671 1.4e-57 226.5 135 81.5
AUR62000182 Chenopodium quinoa HOM05D003091 ORTHO05D003671 5.2e-57 224.6 132 84.1
AUR62006534 Chenopodium quinoa HOM05D003091 ORTHO05D003671 5.2e-57 224.6 132 84.1
Lsat_1_v5_gn_9_48160 Lactuca sativa HOM05D003091 ORTHO05D003671 5.2e-57 224.6 130 85.4
Lalb_Chr23g0269441 Lupinus albus HOM05D003091 ORTHO05D003671 6.8e-57 224.2 132 85.6
Rhsim13G0211100 Rhododendron simsii HOM05D003091 ORTHO05D003671 6.8e-57 224.2 148 78.4
CAN.G96.11 Capsicum annuum HOM05D003091 ORTHO05D003671 8.9e-57 223.8 132 84.1
CDE06G0965 Ceratophyllum demersum HOM05D003091 ORTHO05D003671 8.9e-57 223.8 128 87.5
SGA_v2.0_scaffold29G12260 Striga asiatica HOM05D003091 ORTHO05D003671 8.9e-57 223.8 135 83.7
ATR0580G276 Amborella trichopoda HOM05D003091 ORTHO05D003671 1.5e-56 223.0 132 82.6
Nitab4.5_0005212g0030 Nicotiana tabacum HOM05D003091 ORTHO05D003671 1.5e-56 223.0 134 84.3
Rhsim01G0194700 Rhododendron simsii HOM05D003091 ORTHO05D003671 1.5e-56 223.0 132 84.1
Lsat_1_v5_gn_8_26901 Lactuca sativa HOM05D003091 ORTHO05D003671 2.0e-56 222.6 133 82.0
MBI13_g30131_MAGBIO Magnolia biondii HOM05D003091 ORTHO05D003671 2.0e-56 222.6 132 82.6
Nitab4.5_0000718g0270 Nicotiana tabacum HOM05D003091 ORTHO05D003671 3.4e-56 221.9 134 83.6
MSTRG.17631 Avicennia marina HOM05D003091 ORTHO05D003671 4.4e-56 221.5 132 82.6
CDE02G3432 Ceratophyllum demersum HOM05D003091 ORTHO05D003671 4.4e-56 221.5 128 86.7
HanXRQChr08g0216751 Helianthus annuus HOM05D003091 ORTHO05D003671 4.4e-56 221.5 132 84.1
Aa31LG10G9280 Aethionema arabicum HOM05D003091 ORTHO05D003671 5.7e-56 221.1 132 83.3
Migut.N02369 Erythranthe guttata HOM05D003091 ORTHO05D003671 7.5e-56 220.7 132 84.1
PGSC0003DMG400009454 Solanum tuberosum HOM05D003091 ORTHO05D003671 7.5e-56 220.7 128 85.9
HanXRQChr13g0388471 Helianthus annuus HOM05D003091 ORTHO05D003671 9.8e-56 220.3 132 83.3
Ah.04g161990 Amaranthus hybridus HOM05D003091 ORTHO05D003671 1.3e-55 219.9 132 81.8
ECA233G4335 Erigeron canadensis HOM05D003091 ORTHO05D003671 1.3e-55 219.9 132 82.6
EL10Ac4g10152 Beta vulgaris HOM05D003091 ORTHO05D003671 1.7e-55 219.5 132 81.8
Oeu039575.1 Olea europaea HOM05D003091 ORTHO05D003671 1.7e-55 219.5 132 81.8
Aqoxy2G00365 Aquilegia oxysepala HOM05D003091 ORTHO05D003671 3.7e-55 218.4 132 82.6
AL5G12770 Arabidopsis lyrata HOM05D003091 ORTHO05D003671 3.7e-55 218.4 132 82.6
AT2G03120 Arabidopsis thaliana HOM05D003091 ORTHO05D003671 3.7e-55 218.4 132 82.6
DCAR_002102 Daucus carota HOM05D003091 ORTHO05D003671 3.7e-55 218.4 132 83.3
Sabra09G0053900 Salix brachista HOM05D003091 ORTHO05D003671 3.7e-55 218.4 164 70.7
THA.LOC104826452 Tarenaya hassleriana HOM05D003091 ORTHO05D003671 3.7e-55 218.4 132 84.1
EL10Ac4g10135 Beta vulgaris HOM05D003091 ORTHO05D003671 4.9e-55 218.0 132 81.1
unitig_27.g25006 Utricularia gibba HOM05D003091 ORTHO05D003671 4.9e-55 218.0 132 81.1
BcaC06g31199 Brassica carinata HOM05D003091 ORTHO05D003671 6.4e-55 217.6 132 82.6
Carub.0005s0195 Capsella rubella HOM05D003091 ORTHO05D003671 6.4e-55 217.6 132 81.8
Nn7g36666 Nelumbo nucifera HOM05D003091 ORTHO05D003671 6.4e-55 217.6 132 81.8
BcaC04g21506 Brassica carinata HOM05D003091 ORTHO05D003671 8.3e-55 217.2 132 81.8
A06p43280 Brassica napus HOM05D003091 ORTHO05D003671 8.3e-55 217.2 132 81.8
A09p24090 Brassica napus HOM05D003091 ORTHO05D003671 8.3e-55 217.2 132 81.8
C07p33670 Brassica napus HOM05D003091 ORTHO05D003671 8.3e-55 217.2 132 81.8
C09p30980 Brassica napus HOM05D003091 ORTHO05D003671 8.3e-55 217.2 132 81.8
BolC9t55957H Brassica oleracea HOM05D003091 ORTHO05D003671 8.3e-55 217.2 132 81.8
BraA06t27214Z Brassica rapa HOM05D003091 ORTHO05D003671 8.3e-55 217.2 132 81.8
BraA09t38009Z Brassica rapa HOM05D003091 ORTHO05D003671 8.3e-55 217.2 132 81.8
Thhalv10004551m.g Eutrema salsugineum HOM05D003091 ORTHO05D003671 8.3e-55 217.2 132 82.6
BcaC03g17184 Brassica carinata HOM05D003091 ORTHO05D003671 1.4e-54 216.5 132 81.8
A02p33230 Brassica napus HOM05D003091 ORTHO05D003671 1.4e-54 216.5 132 81.8
C02p51130 Brassica napus HOM05D003091 ORTHO05D003671 1.4e-54 216.5 132 81.8
BolC2t11200H Brassica oleracea HOM05D003091 ORTHO05D003671 1.4e-54 216.5 132 81.8
BraA02t08347Z Brassica rapa HOM05D003091 ORTHO05D003671 1.4e-54 216.5 132 81.8
Migut.D00654 Erythranthe guttata HOM05D003091 ORTHO05D003671 1.8e-54 216.1 132 83.3
BcaB07g30686 Brassica carinata HOM05D003091 ORTHO05D003671 2.4e-54 215.7 132 81.8
CARHR145460 Cardamine hirsuta HOM05D003091 ORTHO05D003671 3.2e-54 215.3 132 80.3
BcaB07g30310 Brassica carinata HOM05D003091 ORTHO05D003671 4.1e-54 214.9 132 81.1
ECA232G2856 Erigeron canadensis HOM05D003091 ORTHO05D003671 5.4e-54 214.5 132 80.3
PSO339G4627 Papaver somniferum HOM05D003091 ORTHO05D003671 7.0e-54 214.2 132 79.5
PSO384G1550 Papaver somniferum HOM05D003091 ORTHO05D003671 7.0e-54 214.2 132 79.5
FAN15G0484 Fragaria x ananassa HOM05D003091 ORTHO05D003671 1.2e-53 213.4 165 68.5
Os05g0436400 Oryza sativa ssp. japonica HOM05D003091 ORTHO05D003671 1.2e-53 213.4 134 81.3
Os02g0117400 Oryza sativa ssp. japonica HOM05D003091 ORTHO05D003671 2.0e-53 212.6 134 80.6
THA.LOC104816927 Tarenaya hassleriana HOM05D003091 ORTHO05D003671 2.7e-53 212.2 128 82.0
vmacro04023 Vaccinium macrocarpon HOM05D003091 ORTHO05D003671 2.7e-53 212.2 120 86.7
Nn2g14838 Nelumbo nucifera HOM05D003091 ORTHO05D003671 3.5e-53 211.8 132 80.3
Zm00001eb209380 Zea mays HOM05D003091 ORTHO05D003671 4.6e-53 211.5 134 80.6
Sp2g14090 Schrenkiella parvula HOM05D003091 ORTHO05D003671 6.0e-53 211.1 132 80.3
Zm00001eb230050 Zea mays HOM05D003091 ORTHO05D003671 1.3e-52 209.9 134 79.1
CSS0031638 Camellia sinensis var. sinensis HOM05D003091 ORTHO05D003671 1.7e-52 209.5 118 87.3
Nitab4.5_0000730g0130 Nicotiana tabacum HOM05D003091 ORTHO05D003671 1.7e-52 209.5 118 86.4
SEGI_37865 Sequoiadendron giganteum HOM05D003091 ORTHO05D003671 2.5e-51 205.7 132 75.8
Hund21985 Selenicereus undatus HOM05D003091 ORTHO05D003671 4.3e-51 204.9 124 83.1
Ah.06g194480 Amaranthus hybridus HOM05D000189 ORTHO05D000474 4.7e-50 201.4 122 80.3
HPP92_020481 Vanilla planifolia HOM05D003091 ORTHO05D003671 1.1e-49 200.3 132 75.0
Pp3c3_24000 Physcomitrium patens HOM05D003091 ORTHO05D003671 8.9e-49 197.2 128 71.9
Pp3c3_24020 Physcomitrium patens HOM05D003091 ORTHO05D003671 8.9e-49 197.2 128 71.9
BolC7t43877H Brassica oleracea HOM05D003091 ORTHO05D003671 1.2e-48 196.8 121 79.3
BcaC06g34018 Brassica carinata HOM05D003091 ORTHO05D003671 1.5e-48 196.4 119 80.7
Mapoly0057s0081 Marchantia polymorpha HOM05D003091 ORTHO05D003671 3.7e-47 191.8 134 69.4
MSTRG.12444 Avicennia marina HOM05D003091 ORTHO05D003671 3.1e-41 172.2 106 84.9
SMO172G0078 Selaginella moellendorffii HOM05D003091 ORTHO05D003671 8.9e-41 170.6 126 65.9
Duzib170G0109 Durio zibethinus HOM05D003091 ORTHO05D003671 1.1e-38 163.7 132 63.6
Gohir.D10G151000 Gossypium hirsutum HOM05D003091 ORTHO05D003671 3.9e-36 155.2 97 84.5
MELO3C003581.2 Cucumis melo HOM05D003091 ORTHO05D003671 3.9e-28 128.6 132 53.0
CBR_g39566 Chara braunii HOM05D003091 ORTHO05D003671 5.4e-22 108.2 95 58.9
Cre07.g332550 Chlamydomonas reinhardtii HOM05D003091 ORTHO05D003671 6.0e-21 104.8 109 48.6
Sc16g0011130 Simmondsia chinensis HOM05D003091 ORTHO05D003671 5.1e-20 101.7 132 44.7
Atru.chr3.2779 Acer truncatum HOM05D003091 ORTHO05D003671 9.0e-17 90.9 51 84.3
TPR.G30569 Trifolium pratense HOM05D003091 ORTHO05D003671 2.9e-15 85.9 87 57.5
PRCOL_00004266 Prasinoderma coloniale HOM05D003091 ORTHO05D003671 6.4e-15 84.7 129 39.5
PSO063G4727 Papaver somniferum HOM05D003091 ORTHO05D003671 2.4e-14 82.8 122 46.7
MELO3C034374.2 Cucumis melo HOM05D003091 ORTHO05D003671 2.1e-13 79.7 64 62.5
Gohir.A13G219200 Gossypium hirsutum HOM05D003091 ORTHO05D003671 6.4e-07 58.2 29 79.3


User provided reference genes

Program Settings