Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12791_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 5.1e-204 714.1 350 100.0
Medtr1g008050 Medicago truncatula HOM05D001081 ORTHO05D004708 1.8e-153 546.2 339 78.2
Psat6g034720 Pisum sativum HOM05D001081 ORTHO05D004708 8.2e-146 520.8 340 77.1
Glyma.17G128700 Glycine max HOM05D001081 ORTHO05D004708 1.9e-134 483.0 330 71.2
TPR.G12082 Trifolium pratense HOM05D001081 ORTHO05D004708 4.7e-133 478.4 339 69.0
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 4.5e-128 461.8 327 69.1
Medtr1g007950 Medicago truncatula HOM05D001081 ORTHO05D004708 5.2e-124 448.4 342 65.8
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 1.5e-115 420.2 328 61.6
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 6.4e-114 414.8 331 61.9
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 3.9e-111 405.6 329 62.9
Ciclev10018477m.g Citrus clementina HOM05D001081 ORTHO05D004708 4.3e-110 402.1 306 62.7
Manes.01G183500 Manihot esculenta HOM05D001081 ORTHO05D004708 2.3e-108 396.4 310 62.9
vmacro06386 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 4.0e-108 395.6 336 58.6
Nn1g00260 Nelumbo nucifera HOM05D001081 ORTHO05D004708 6.8e-108 394.8 336 57.1
Gohir.A11G015200 Gossypium hirsutum HOM05D001081 ORTHO05D004708 2.6e-107 392.9 328 61.3
Gohir.D11G015300 Gossypium hirsutum HOM05D001081 ORTHO05D004708 1.3e-106 390.6 328 61.0
Sabra15G0067900 Salix brachista HOM05D001081 ORTHO05D004708 1.3e-106 390.6 310 64.5
Sabra15G0068100 Salix brachista HOM05D001081 ORTHO05D004708 1.3e-106 390.6 311 64.6
Lj1C1020T7 Lonicera japonica HOM05D001081 ORTHO05D004708 1.7e-106 390.2 334 57.5
CSS0032097 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D004708 2.2e-106 389.8 343 57.1
Dinv35339 Davidia involucrata HOM05D001081 ORTHO05D004708 3.7e-106 389.0 309 60.8
Atru.chr12.2203 Acer truncatum HOM05D001081 ORTHO05D004708 4.9e-106 388.7 333 59.2
Gorai.007G015700 Gossypium raimondii HOM05D001081 ORTHO05D004708 4.9e-106 388.7 328 60.7
Prupe.2G309600 Prunus persica HOM05D001081 ORTHO05D004708 8.3e-106 387.9 339 58.4
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.6e-104 383.6 310 60.0
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 3.5e-104 382.5 309 62.8
CANSAT21G2573 Cannabis sativa HOM05D001081 ORTHO05D004708 1.0e-103 380.9 329 58.7
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 1.3e-103 380.6 329 58.7
CANSAT21G1825 Cannabis sativa HOM05D001081 ORTHO05D004708 1.7e-103 380.2 329 58.4
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 3.0e-103 379.4 309 62.5
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 1.1e-102 377.5 316 60.4
Eucgr.G00143 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.9e-102 376.7 323 56.7
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 1.9e-102 376.7 329 56.8
MD07G1288100 Malus domestica HOM05D001081 ORTHO05D004708 1.2e-99 367.5 297 61.3
Rhsim03G0209100 Rhododendron simsii HOM05D001081 ORTHO05D004708 2.0e-99 366.7 323 57.6
Sopen03g022900 Solanum pennellii HOM05D001081 ORTHO05D004708 4.4e-99 365.5 337 53.7
RcHm_v2.0_Chr1g0381531 Rosa chinensis HOM05D001081 ORTHO05D004708 2.2e-98 363.2 309 59.2
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 2.9e-98 362.8 329 55.3
PSO063G4550 Papaver somniferum HOM05D001081 ORTHO05D004708 4.9e-98 362.1 336 54.2
Aqoxy3G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 1.9e-97 360.1 335 57.6
Eucgr.G00111 Eucalyptus grandis HOM05D001081 ORTHO05D004708 2.4e-97 359.8 323 55.4
vmacro22638 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 2.4e-97 359.8 274 65.0
Hma1.2p1_0404F.1_g145340 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 4.2e-97 359.0 286 61.2
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 7.1e-97 358.2 337 54.3
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 7.1e-97 358.2 337 54.3
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 2.7e-96 356.3 329 55.0
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 3.5e-96 355.9 334 54.2
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 6.0e-96 355.1 337 53.4
Nitab4.5_0000548g0110 Nicotiana tabacum HOM05D001081 ORTHO05D004708 1.3e-95 354.0 335 56.1
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 5.1e-95 352.1 329 53.8
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 6.6e-95 351.7 332 53.9
MBI06_g13415_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D004708 8.7e-95 351.3 340 55.0
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 4.3e-94 349.0 329 53.8
Eucgr.H05016 Eucalyptus grandis HOM05D001081 ORTHO05D004708 5.6e-94 348.6 323 53.9
AUR62019407 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.2e-93 347.4 315 56.8
Eucgr.G00092 Eucalyptus grandis HOM05D001081 ORTHO05D004708 1.6e-93 347.1 323 54.2
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 3.6e-93 345.9 339 52.5
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 4.7e-93 345.5 336 52.7
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 6.2e-93 345.1 329 52.9
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 6.2e-93 345.1 329 52.9
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 6.2e-93 345.1 329 52.9
Actinidia08651 Actinidia chinensis HOM05D001081 ORTHO05D004708 8.1e-93 344.7 388 47.2
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 4.0e-92 342.4 332 53.0
GSVIVG01038555001 Vitis vinifera HOM05D001081 ORTHO05D004708 4.4e-91 339.0 438 43.4
EL10Ac3g05278 Beta vulgaris HOM05D001081 ORTHO05D004708 2.9e-90 336.3 351 50.4
Lsat_1_v5_gn_8_5261 Lactuca sativa HOM05D001081 ORTHO05D004708 3.8e-90 335.9 313 55.3
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 6.4e-90 335.1 356 49.7
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 1.4e-89 334.0 343 52.8
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 7.1e-89 331.6 363 49.0
Cpa.g.sc3.91 Carica papaya HOM05D001081 ORTHO05D004708 1.0e-87 327.8 281 59.8
ATR0602G075 Amborella trichopoda HOM05D001081 ORTHO05D004708 1.3e-85 320.9 315 53.0
Lalb_Chr10g0091361 Lupinus albus HOM05D001081 ORTHO05D004708 6.2e-85 318.5 212 74.1
Hund21007 Selenicereus undatus HOM05D001081 ORTHO05D004708 2.0e-83 313.5 332 50.0
PSO781G0289 Papaver somniferum HOM05D001081 ORTHO05D004708 1.3e-82 310.8 339 49.0
HanXRQChr08g0225341 Helianthus annuus HOM05D001081 ORTHO05D004708 9.3e-81 304.7 314 51.3
CiPaw.06G046000 Carya illinoinensis HOM05D001081 ORTHO05D004708 2.5e-78 296.6 210 70.5
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 3.7e-77 292.7 337 47.5
TWI39G0245 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 6.2e-77 292.0 256 57.4
HanXRQChr08g0225301 Helianthus annuus HOM05D001081 ORTHO05D004708 5.8e-75 285.4 312 49.4
FAN01G0187 Fragaria x ananassa HOM05D001081 ORTHO05D004708 4.6e-72 275.8 217 65.9
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 5.6e-70 268.9 333 45.6
Cc02_g01510 Coffea canephora HOM05D001081 ORTHO05D004708 2.8e-69 266.5 414 39.6
BraA06t26425Z Brassica rapa HOM05D001081 ORTHO05D004708 2.4e-68 263.5 206 63.6
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 2.0e-67 260.4 205 66.3
FAN06G3553 Fragaria x ananassa HOM05D001081 ORTHO05D004708 2.0e-67 260.4 205 66.3
Hma1.2p1_0404F.1_g145380 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.0e-66 258.1 208 58.7
SalBow4G1120 Salvia bowleyana HOM05D001081 ORTHO05D004708 2.2e-66 256.9 219 59.8
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 3.9e-63 246.1 335 43.6
Aa31LG11G3510 Aethionema arabicum HOM05D001081 ORTHO05D004708 8.2e-61 238.4 229 56.3
HanXRQChr08g0225291 Helianthus annuus HOM05D001081 ORTHO05D004708 1.8e-60 237.3 293 46.4
HanXRQChr10g0291811 Helianthus annuus HOM05D001081 ORTHO05D004708 1.4e-57 227.6 181 65.2
SGA_v2.0_scaffold9G04846 Striga asiatica HOM05D001081 ORTHO05D004708 1.7e-53 214.2 200 58.0
Mapoly0076s0015 Marchantia polymorpha HOM05D001081 ORTHO05D004708 6.3e-53 212.2 327 40.7
DCAR_008928 Daucus carota HOM05D001081 ORTHO05D004708 8.2e-53 211.8 285 43.9
Carub.0006s2203 Capsella rubella HOM05D001081 ORTHO05D004708 2.4e-52 210.3 178 59.6
Migut.F00209 Erythranthe guttata HOM05D001081 ORTHO05D004708 3.8e-50 203.0 154 64.9
FvH4_7g31511 Fragaria vesca HOM05D001081 ORTHO05D004708 3.2e-49 199.9 160 58.1
CAN.G481.14 Capsicum annuum HOM05D001081 ORTHO05D004708 2.1e-48 197.2 205 50.2
Gohir.D11G256700 Gossypium hirsutum HOM05D001081 ORTHO05D010708 5.1e-47 192.6 142 67.6
Mapoly0111s0028 Marchantia polymorpha HOM05D001081 ORTHO05D004708 3.3e-46 189.9 319 37.6
PSO170G6091 Papaver somniferum HOM05D001081 ORTHO05D004708 3.3e-46 189.9 206 45.6
Gorai.010G233200 Gossypium raimondii HOM05D001081 ORTHO05D010708 3.7e-45 186.4 142 66.2
Nitab4.5_0006933g0040 Nicotiana tabacum HOM05D001081 ORTHO05D004708 8.2e-45 185.3 203 49.8
AagrBONN_evm.TU.Sc2ySwM_117.3719 Anthoceros agrestis HOM05D001081 ORTHO05D004708 1.7e-42 177.6 332 37.0
AagrBONN_evm.TU.Sc2ySwM_228.1615 Anthoceros agrestis HOM05D001081 ORTHO05D004708 3.9e-39 166.4 340 35.3
SMO213G0001 Selaginella moellendorffii HOM05D001081 ORTHO05D004708 2.2e-37 160.6 346 32.9
Solyc03g083120.3 Solanum lycopersicum HOM05D001081 ORTHO05D024756 1.5e-33 147.9 160 47.5
Carub.0006s2204 Capsella rubella HOM05D001081 ORTHO05D024756 8.8e-31 138.7 166 42.2
Peaxi162Scf00740g00140 Petunia axillaris HOM05D001081 ORTHO05D024756 8.8e-31 138.7 181 43.1
Potri.012G016100 Populus trichocarpa HOM05D001081 ORTHO05D004708 8.8e-31 138.7 102 66.7
AL6G35700 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 1.2e-30 138.3 132 59.8
Gorai.011G131700 Gossypium raimondii HOM05D001081 ORTHO05D004708 1.7e-29 134.4 107 62.6
Lalb_Chr10g0091351 Lupinus albus HOM05D001081 ORTHO05D004708 2.0e-27 127.5 134 52.2
COL.COLO4_16768 Corchorus olitorius HOM05D001081 ORTHO05D004708 3.5e-27 126.7 107 61.7
Migut.F00208 Erythranthe guttata HOM05D001081 ORTHO05D004708 5.5e-25 119.4 132 45.5
SEGI_15117 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 3.6e-24 116.7 178 37.1
TWI39G0445 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 1.8e-23 114.4 92 64.1
Pp3c22_17807 Physcomitrium patens HOM05D001081 ORTHO05D004708 1.7e-21 107.8 198 36.4
Sopen03g019380 Solanum pennellii HOM05D001081 ORTHO05D029255 1.4e-20 104.8 129 43.4
Actinidia04725 Actinidia chinensis HOM05D001081 ORTHO05D004708 2.7e-19 100.5 71 66.2
Aqoxy4G01594 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 2.7e-19 100.5 259 30.1
Actinidia27675 Actinidia chinensis HOM05D001081 ORTHO05D004708 2.9e-18 97.1 79 60.8
Hma1.2p1_0013F.1_g008960 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 4.4e-14 83.2 47 80.9
Lsat_1_v5_gn_9_3381 Lactuca sativa HOM05D001081 ORTHO05D004708 6.3e-13 79.3 75 56.0
Actinidia04689 Actinidia chinensis HOM05D001081 ORTHO05D004708 1.4e-12 78.2 58 63.8
Dinv08524 Davidia involucrata HOM05D001081 ORTHO05D004708 1.3e-10 71.6 118 36.4
Lsat_1_v5_gn_6_63561 Lactuca sativa HOM05D001081 ORTHO05D004708 1.9e-09 67.8 58 58.6
CARHR214910 Cardamine hirsuta HOM05D001081 ORTHO05D043476 2.5e-09 67.4 89 38.2
Pp3c8_21182 Physcomitrium patens HOM05D001081 ORTHO05D004708 2.1e-08 64.3 192 32.3
AUR62000987 Chenopodium quinoa HOM05D001081 ORTHO05D004708 8.0e-08 62.4 45 66.7
Cpa.g.sc99.28 Carica papaya HOM05D001081 ORTHO05D004708 1.4e-07 61.6 44 61.4
HanXRQChr06g0165641 Helianthus annuus HOM05D001081 ORTHO05D024756 5.2e-07 59.7 66 50.0
HanXRQChr08g0231511 Helianthus annuus HOM05D001081 ORTHO05D024756 5.2e-07 59.7 66 50.0


User provided reference genes

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