Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12776_v3 Cicer arietinum L. HOM05D006817 ORTHO05D008603 7.4e-170 600.5 315 100.0
Psat6g035880 Pisum sativum HOM05D006817 ORTHO05D008603 1.5e-146 523.1 323 87.0
TPR.G24539 Trifolium pratense HOM05D006817 ORTHO05D008603 3.1e-144 515.4 323 86.7
Medtr1g007630 Medicago truncatula HOM05D006817 ORTHO05D008603 1.2e-140 503.4 323 85.4
Lj5g0023407 Lotus japonicus HOM05D006817 ORTHO05D008603 2.1e-132 476.1 326 78.8
Glyma.19G067100 Glycine max HOM05D006817 ORTHO05D008603 1.0e-126 457.2 337 76.9
Phvul.001G074700 Phaseolus vulgaris HOM05D006817 ORTHO05D008603 3.2e-125 452.2 337 75.1
arahy.Tifrunner.gnm1.ann1.6QBV89 Arachis hypogaea HOM05D006817 ORTHO05D008603 4.1e-120 435.3 334 72.8
arahy.Tifrunner.gnm1.ann1.6ZT9VY Arachis hypogaea HOM05D006817 ORTHO05D008603 9.1e-120 434.1 334 72.8
Lalb_Chr22g0360921 Lupinus albus HOM05D006817 ORTHO05D008603 1.4e-112 410.2 303 75.9
TAR623G0065 Trochodendron aralioides HOM05D006817 ORTHO05D008603 9.8e-106 387.5 298 72.5
Thecc.10G176900 Theobroma cacao HOM05D006817 ORTHO05D008603 1.8e-104 383.3 323 66.3
Atru.chr12.157 Acer truncatum HOM05D006817 ORTHO05D008603 1.0e-102 377.5 323 66.3
Gohir.A10G180300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 1.5e-101 373.6 324 65.1
Gorai.011G210100 Gossypium raimondii HOM05D006817 ORTHO05D008603 2.5e-101 372.9 324 65.1
Cfa001223 Carpinus fangiana HOM05D006817 ORTHO05D008603 9.5e-101 370.9 330 66.1
COL.COLO4_10038 Corchorus olitorius HOM05D006817 ORTHO05D008603 3.6e-100 369.0 325 65.2
CiPaw.02G198400 Carya illinoinensis HOM05D006817 ORTHO05D008603 4.7e-100 368.6 329 64.7
FAN10G2384 Fragaria x ananassa HOM05D006817 ORTHO05D008603 6.2e-100 368.2 341 62.2
Prupe.2G261900 Prunus persica HOM05D006817 ORTHO05D008603 6.2e-100 368.2 328 63.1
QL08p064576 Quercus lobata HOM05D006817 ORTHO05D008603 1.4e-99 367.1 349 62.5
Sopen06g015650 Solanum pennellii HOM05D006817 ORTHO05D008603 1.8e-99 366.7 326 62.9
Aqoxy4G02362 Aquilegia oxysepala HOM05D006817 ORTHO05D008603 2.3e-99 366.3 298 68.8
Solyc06g050210.3 Solanum lycopersicum HOM05D006817 ORTHO05D008603 2.3e-99 366.3 326 63.2
Manes.10G004900 Manihot esculenta HOM05D006817 ORTHO05D008603 3.1e-99 365.9 332 64.2
GSVIVG01032704001 Vitis vinifera HOM05D006817 ORTHO05D008603 4.0e-99 365.5 298 69.1
Potri.019G048700 Populus trichocarpa HOM05D006817 ORTHO05D008603 6.8e-99 364.8 301 68.1
Actinidia00992 Actinidia chinensis HOM05D006817 ORTHO05D008603 1.2e-98 364.0 326 62.3
Migut.F00593 Erythranthe guttata HOM05D006817 ORTHO05D008603 2.6e-98 362.8 298 68.1
PGR044G0301 Punica granatum HOM05D006817 ORTHO05D008603 2.6e-98 362.8 326 62.9
FAN01G1353 Fragaria x ananassa HOM05D006817 ORTHO05D008603 3.4e-98 362.5 345 60.9
Eucgr.J00131 Eucalyptus grandis HOM05D006817 ORTHO05D008603 4.4e-98 362.1 298 66.8
THA.LOC104816518 Tarenaya hassleriana HOM05D006817 ORTHO05D008603 1.3e-97 360.5 297 66.7
CAN.G169.4 Capsicum annuum HOM05D006817 ORTHO05D008603 1.7e-97 360.1 326 62.9
Ciclev10031264m.g Citrus clementina HOM05D006817 ORTHO05D008603 3.7e-97 359.0 331 63.7
PSO170G5674 Papaver somniferum HOM05D006817 ORTHO05D008603 4.9e-97 358.6 297 68.4
Nn2g10348 Nelumbo nucifera HOM05D006817 ORTHO05D008603 1.1e-96 357.5 298 68.5
Peaxi162Scf00739g00017 Petunia axillaris HOM05D006817 ORTHO05D008603 1.1e-96 357.5 304 65.8
CSS0030257 Camellia sinensis var. sinensis HOM05D006817 ORTHO05D008603 1.9e-96 356.7 328 62.2
MD01G1164100 Malus domestica HOM05D006817 ORTHO05D008603 4.1e-96 355.5 326 62.6
vmacro09974 Vaccinium macrocarpon HOM05D006817 ORTHO05D008603 4.1e-96 355.5 294 67.7
Rhsim09G0184300 Rhododendron simsii HOM05D006817 ORTHO05D008603 5.4e-96 355.1 298 68.1
PSO017G6024 Papaver somniferum HOM05D006817 ORTHO05D008603 7.0e-96 354.8 297 68.0
ClCG07G004850 Citrullus lanatus HOM05D006817 ORTHO05D008603 1.2e-95 354.0 323 62.8
CsaV3_5G010750 Cucumis sativus L. HOM05D006817 ORTHO05D008603 1.2e-95 354.0 323 61.6
MD07G1231900 Malus domestica HOM05D006817 ORTHO05D008603 2.7e-95 352.8 327 63.6
Lj8A57G58 Lonicera japonica HOM05D006817 ORTHO05D008603 3.5e-95 352.4 305 66.2
Nitab4.5_0011715g0010 Nicotiana tabacum HOM05D006817 ORTHO05D008603 3.5e-95 352.4 326 60.7
Oeu036532.1 Olea europaea HOM05D006817 ORTHO05D008603 3.9e-94 349.0 326 62.0
MSTRG.27274 Avicennia marina HOM05D006817 ORTHO05D008603 5.0e-94 348.6 297 66.3
MELO3C020113.2 Cucumis melo HOM05D006817 ORTHO05D008603 1.1e-93 347.4 326 61.7
TWI09G1614 Tripterygium wilfordii HOM05D006817 ORTHO05D008603 1.9e-93 346.7 326 61.7
Gohir.D10G187300 Gossypium hirsutum HOM05D006817 ORTHO05D008603 5.6e-93 345.1 324 61.4
Sed0020006 Sechium edule HOM05D006817 ORTHO05D008603 5.6e-93 345.1 323 62.2
EL10Ac2g04256 Beta vulgaris HOM05D006817 ORTHO05D008603 4.7e-92 342.0 292 64.4
Haze_17339 Corylus avellana HOM05D006817 ORTHO05D008603 4.7e-92 342.0 366 58.2
Thhalv10013352m.g Eutrema salsugineum HOM05D006817 ORTHO05D008603 3.4e-90 335.9 297 63.0
HanXRQChr15g0493791 Helianthus annuus HOM05D006817 ORTHO05D008603 9.9e-90 334.3 300 61.7
Cc02_g05530 Coffea canephora HOM05D006817 ORTHO05D008603 1.7e-89 333.6 298 64.4
MBI15_g27349_MAGBIO Magnolia biondii HOM05D006817 ORTHO05D008603 2.2e-89 333.2 338 58.9
Ah.16g104230 Amaranthus hybridus HOM05D006817 ORTHO05D008603 2.9e-89 332.8 296 63.9
BcaC06g32240 Brassica carinata HOM05D006817 ORTHO05D008603 8.3e-89 331.3 321 59.5
Sp6g37510 Schrenkiella parvula HOM05D006817 ORTHO05D008603 8.3e-89 331.3 334 57.8
C09p71390 Brassica napus HOM05D006817 ORTHO05D008603 1.9e-88 330.1 321 59.5
HPP92_019064 Vanilla planifolia HOM05D006817 ORTHO05D008603 4.1e-88 328.9 292 63.0
A10p30880 Brassica napus HOM05D006817 ORTHO05D008603 2.1e-87 326.6 321 59.2
Lsat_1_v5_gn_9_59361 Lactuca sativa HOM05D006817 ORTHO05D008603 2.1e-87 326.6 301 63.1
CDE04G2280 Ceratophyllum demersum HOM05D006817 ORTHO05D008603 6.0e-87 325.1 295 63.1
Sc11g0005730 Simmondsia chinensis HOM05D006817 ORTHO05D008603 6.0e-87 325.1 298 62.8
BolC9t59902H Brassica oleracea HOM05D006817 ORTHO05D008603 7.8e-87 324.7 326 58.6
VMungo0647G0362 Vigna mungo HOM05D006817 ORTHO05D008603 1.3e-86 323.9 253 73.1
ECA232G4264 Erigeron canadensis HOM05D006817 ORTHO05D008603 1.1e-85 320.9 300 60.0
DCAR_014588 Daucus carota HOM05D006817 ORTHO05D008603 1.5e-85 320.5 308 61.4
BraA10t45133Z Brassica rapa HOM05D006817 ORTHO05D008603 2.5e-85 319.7 328 57.9
RcHm_v2.0_Chr1g0371891 Rosa chinensis HOM05D006817 ORTHO05D008603 8.1e-84 314.7 254 67.7
Os12g0112300 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 2.0e-82 310.1 296 61.1
FAN03G2834 Fragaria x ananassa HOM05D006817 ORTHO05D008603 7.6e-82 308.1 342 55.0
HanXRQChr08g0222561 Helianthus annuus HOM05D006817 ORTHO05D008603 1.3e-81 307.4 289 61.2
Sabra19G0058300 Salix brachista HOM05D000055 ORTHO05D000057 1.9e-80 303.5 272 62.9
ATR0681G057 Amborella trichopoda HOM05D006817 ORTHO05D008603 3.2e-80 302.8 292 61.3
Zm00001eb406320 Zea mays HOM05D006817 ORTHO05D008603 4.1e-80 302.4 296 59.5
Cpa.g.sc19.86 Carica papaya HOM05D006817 ORTHO05D008603 3.9e-78 295.8 324 55.9
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 3.9e-78 295.8 322 56.5
CANSAT56G1261 Cannabis sativa HOM05D006817 ORTHO05D008603 6.9e-75 285.0 301 58.1
AUR62003430 Chenopodium quinoa HOM05D006817 ORTHO05D008603 8.4e-73 278.1 294 57.8
AUR62012358 Chenopodium quinoa HOM05D006817 ORTHO05D008603 4.2e-72 275.8 292 56.8
FvH4_7g25670 Fragaria vesca HOM05D006817 ORTHO05D008603 3.9e-70 269.2 262 59.9
SGA_v2.0_scaffold44G16643 Striga asiatica HOM05D006817 ORTHO05D008603 8.7e-70 268.1 302 54.3
Aa31LG11G6330 Aethionema arabicum HOM05D006817 ORTHO05D008603 2.8e-68 263.1 341 49.3
Pp3c22_2490 Physcomitrium patens HOM05D006817 ORTHO05D008603 1.9e-64 250.4 304 53.0
MD05G1328700 Malus domestica HOM05D006817 ORTHO05D008603 5.5e-56 222.2 199 66.8
CARHR207930 Cardamine hirsuta HOM05D006817 ORTHO05D008603 7.1e-56 221.9 195 61.0
AT5G05310 Arabidopsis thaliana HOM05D006817 ORTHO05D008603 1.6e-55 220.7 184 63.6
QL10p038395 Quercus lobata HOM05D006817 ORTHO05D008603 1.1e-53 214.5 165 72.1
AUR62031486 Chenopodium quinoa HOM05D006817 ORTHO05D008603 1.3e-44 184.5 298 46.3
QL05p063879 Quercus lobata HOM05D006817 ORTHO05D008603 5.0e-41 172.6 151 66.2
SEGI_41528 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 1.7e-36 157.5 168 54.8
unitig_46.g18743 Utricularia gibba HOM05D006817 ORTHO05D008603 1.0e-33 148.3 152 54.6
QL03p030054 Quercus lobata HOM05D006817 ORTHO05D008603 2.1e-31 140.6 95 81.1
QL06p040335 Quercus lobata HOM05D006817 ORTHO05D008603 3.6e-31 139.8 93 82.8
QL09p047975 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-28 131.3 93 78.5
QL10p065865 Quercus lobata HOM05D006817 ORTHO05D008603 5.7e-21 105.9 74 77.0
Carub.0006s0424 Capsella rubella HOM05D006817 ORTHO05D008603 5.3e-19 99.4 113 52.2
FvH4_7g25690 Fragaria vesca HOM05D006817 ORTHO05D008603 2.2e-17 94.0 92 59.8
Os11g0112900 Oryza sativa ssp. japonica HOM05D006817 ORTHO05D008603 2.5e-16 90.5 77 63.6
FAN06G1140 Fragaria x ananassa HOM05D006817 ORTHO05D008603 1.6e-15 87.8 58 79.3
MD17G1183400 Malus domestica HOM05D006817 ORTHO05D008603 6.7e-14 82.4 57 75.4
FAN06G4794 Fragaria x ananassa HOM05D006817 ORTHO05D008603 6.3e-12 75.9 77 57.1
Cre08.g361000 Chlamydomonas reinhardtii HOM05D006817 ORTHO05D008603 8.2e-12 75.5 223 30.0
SEGI_05100 Sequoiadendron giganteum HOM05D006817 ORTHO05D008603 4.0e-06 56.6 71 49.3


User provided reference genes

Program Settings