Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12768_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 7.6e-275 949.9 483 100.0
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 2.1e-264 915.2 522 91.2
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 3.7e-197 691.8 520 72.7
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 8.6e-194 680.6 526 71.7
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 2.1e-192 676.0 523 71.7
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 2.6e-150 536.2 531 59.1
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 7.7e-126 454.9 521 51.8
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 1.0e-125 454.5 495 54.3
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 2.5e-124 449.9 515 51.7
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 9.7e-121 438.0 539 50.8
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 3.7e-120 436.0 529 51.8
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 4.1e-119 432.6 532 50.9
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 1.1e-116 424.5 528 52.3
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 2.6e-113 413.3 528 50.9
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 1.5e-100 370.9 523 45.7
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 5.5e-100 369.0 527 46.1
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 1.2e-94 351.3 534 44.4
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 1.2e-94 351.3 495 46.1
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 2.3e-93 347.1 519 45.1
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 2.9e-93 346.7 547 43.3
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 8.6e-93 345.1 458 47.6
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 2.1e-91 340.5 521 44.1
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 1.8e-90 337.4 543 44.0
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 1.5e-89 334.3 521 44.1
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 2.6e-89 333.6 527 43.1
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 3.4e-89 333.2 525 41.7
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 5.7e-89 332.4 584 42.0
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 7.5e-89 332.0 504 45.4
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 3.7e-88 329.7 537 42.8
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 5.4e-87 325.9 503 42.9
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.2e-86 324.7 539 42.5
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 7.8e-86 322.0 549 41.0
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 3.9e-85 319.7 538 41.1
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 6.6e-85 318.9 549 41.5
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 2.5e-84 317.0 451 46.8
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 3.3e-84 316.6 541 41.0
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 4.3e-84 316.2 544 41.4
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 2.1e-83 313.9 545 40.9
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 6.1e-83 312.4 554 41.3
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 6.1e-83 312.4 464 44.4
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 1.8e-82 310.8 553 41.4
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 5.2e-82 309.3 508 41.5
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 5.2e-82 309.3 555 40.9
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 6.8e-82 308.9 549 41.0
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 8.9e-82 308.5 555 41.1
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 1.5e-81 307.8 536 40.3
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 4.4e-81 306.2 536 41.4
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 1.7e-80 304.3 559 40.1
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 7.0e-79 298.9 509 41.5
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 2.0e-78 297.4 491 42.6
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 4.6e-78 296.2 433 45.3
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 4.6e-78 296.2 550 39.5
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 7.8e-78 295.4 518 41.3
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 3.0e-77 293.5 470 44.7
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 3.0e-77 293.5 540 40.4
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.5e-76 291.2 498 42.2
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 1.9e-76 290.8 510 41.6
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 5.6e-76 289.3 518 40.9
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 7.3e-76 288.9 349 49.9
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 2.1e-75 287.3 548 40.0
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.1e-75 287.3 476 42.2
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 2.1e-75 287.3 491 41.3
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 6.2e-75 285.8 523 39.0
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 2.3e-74 283.9 531 37.9
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 1.2e-73 281.6 538 40.1
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.3e-72 278.1 379 46.7
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 2.9e-72 276.9 530 39.6
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 8.3e-72 275.4 507 38.7
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 8.3e-72 275.4 436 42.9
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.4e-71 274.6 485 40.2
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 4.1e-71 273.1 362 48.3
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 4.1e-71 273.1 536 38.6
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 7.1e-71 272.3 357 47.9
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 7.1e-71 272.3 528 39.2
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 7.1e-71 272.3 530 39.2
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 4.6e-70 269.6 530 39.2
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 1.3e-69 268.1 477 40.0
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 3.9e-69 266.5 543 37.2
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 8.6e-69 265.4 492 37.2
Lj8C54T21 Lonicera japonica HOM05D003400 ORTHO05D003687 8.6e-69 265.4 386 43.8
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 1.9e-68 264.2 426 42.7
Dinv34484 Davidia involucrata HOM05D003400 ORTHO05D003687 2.1e-67 260.8 415 41.4
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 2.1e-67 260.8 479 38.2
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 4.7e-67 259.6 674 32.5
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 6.2e-67 259.2 679 32.0
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.1e-66 258.5 479 38.0
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 8.9e-66 255.4 418 40.4
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 8.9e-66 255.4 675 31.1
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 2.0e-65 254.2 500 37.6
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 2.6e-65 253.8 478 39.7
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 4.4e-65 253.1 330 44.8
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 4.4e-65 253.1 422 38.9
Sed0014609 Sechium edule HOM05D003400 ORTHO05D003687 4.4e-65 253.1 451 41.2
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 7.5e-65 252.3 506 38.5
Hund13449 Selenicereus undatus HOM05D003400 ORTHO05D003687 1.1e-63 248.4 526 36.5
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 2.7e-62 243.8 453 40.6
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 2.7e-62 243.8 534 37.6
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 1.7e-61 241.1 396 41.9
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 3.9e-61 240.0 372 43.3
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 5.1e-61 239.6 340 46.8
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 5.1e-61 239.6 349 44.1
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 5.6e-60 236.1 383 42.0
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 7.3e-60 235.7 522 35.4
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 8.1e-59 232.3 446 40.4
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 1.4e-58 231.5 355 42.8
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 1.5e-57 228.0 501 36.5
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 5.8e-57 226.1 515 34.6
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 9.9e-57 225.3 307 45.0
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 2.2e-56 224.2 426 39.0
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 3.5e-54 216.9 400 38.0
TAR636G0727 Trochodendron aralioides HOM05D003400 ORTHO05D003687 7.8e-54 215.7 359 41.5
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 1.3e-53 214.9 329 43.5
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 2.3e-53 214.2 491 32.6
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 3.9e-53 213.4 495 35.6
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 6.6e-53 212.6 460 36.5
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 3.3e-52 210.3 358 40.5
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 5.6e-52 209.5 439 35.1
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 9.6e-52 208.8 397 38.0
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 9.6e-52 208.8 397 38.0
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 1.6e-51 208.0 351 39.0
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 2.8e-51 207.2 439 35.1
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 4.8e-51 206.5 372 39.0
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 2.4e-50 204.1 362 37.6
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 9.0e-50 202.2 327 39.8
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 4.4e-49 199.9 380 36.1
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 7.6e-49 199.1 322 39.1
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 2.2e-48 197.6 538 31.6
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 2.9e-48 197.2 349 40.1
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 3.8e-48 196.8 308 41.9
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 3.8e-48 196.8 347 38.3
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 1.4e-47 194.9 310 42.6
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 1.9e-47 194.5 302 41.4
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 5.4e-47 193.0 424 35.1
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 1.6e-46 191.4 312 41.3
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 3.5e-46 190.3 542 31.0
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 1.0e-45 188.7 289 41.2
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 1.3e-45 188.3 363 36.9
Sc14g0005640 Simmondsia chinensis HOM05D003400 ORTHO05D003687 1.3e-43 181.8 284 43.3
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 4.8e-43 179.9 348 36.5
Actinidia01000 Actinidia chinensis HOM05D003400 ORTHO05D003687 6.4e-40 169.5 268 43.3
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 1.9e-39 167.9 512 31.1
CiPaw.13G063500 Carya illinoinensis HOM05D003400 ORTHO05D003687 1.2e-38 165.2 359 34.3
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 2.1e-38 164.5 527 31.1
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 6.0e-38 162.9 499 31.9
Haze_24472 Corylus avellana HOM05D003400 ORTHO05D003687 6.0e-38 162.9 347 37.8
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 7.9e-38 162.5 517 30.4
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 1.8e-37 161.4 499 30.3
QL01p024561 Quercus lobata HOM05D003400 ORTHO05D003687 8.7e-37 159.1 349 33.8
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 9.6e-36 155.6 476 31.5
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.1e-34 152.1 490 30.0
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 4.0e-34 150.2 482 29.5
HPP92_024977 Vanilla planifolia HOM05D003400 ORTHO05D003687 9.0e-34 149.1 472 31.8
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 1.0e-32 145.6 479 28.6
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 1.3e-32 145.2 482 29.0
Oeu006054.1 Olea europaea HOM05D003400 ORTHO05D003687 2.7e-30 137.5 263 34.2
MSTRG.8378 Avicennia marina HOM05D003400 ORTHO05D003687 7.9e-30 136.0 158 50.6
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 7.9e-30 136.0 495 27.7
ATR1127G045 Amborella trichopoda HOM05D003400 ORTHO05D003687 1.3e-29 135.2 359 31.8
unitig_37.g12474 Utricularia gibba HOM05D003400 ORTHO05D003687 2.4e-26 124.4 267 33.3
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 2.0e-25 121.3 223 38.6
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 1.0e-24 119.0 478 26.6
BcaC06g32234 Brassica carinata HOM05D003400 ORTHO05D003687 6.5e-24 116.3 271 33.9
BcaC02g07326 Brassica carinata HOM05D003400 ORTHO05D003687 1.0e-21 109.0 355 27.6
A04p31060 Brassica napus HOM05D003400 ORTHO05D003687 1.8e-21 108.2 285 30.2
BcaB06g29158 Brassica carinata HOM05D003400 ORTHO05D003687 2.3e-21 107.8 278 30.2
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.3e-21 107.8 99 57.6
BolC4t28345H Brassica oleracea HOM05D003400 ORTHO05D003687 5.1e-21 106.7 335 27.2
Potri.013G157700 Populus trichocarpa HOM05D003400 ORTHO05D003687 8.7e-21 105.9 378 27.5
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 8.7e-21 105.9 430 25.6
BraA04t18562Z Brassica rapa HOM05D003400 ORTHO05D003687 2.2e-19 101.3 279 28.7
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 3.1e-18 97.4 128 46.1
Zm00001eb209040 Zea mays HOM05D003400 ORTHO05D003687 4.1e-18 97.1 103 48.5
C04p68450 Brassica napus HOM05D003400 ORTHO05D003687 9.4e-15 85.9 275 26.9
Duzib128G1678 Durio zibethinus HOM05D003400 ORTHO05D003687 1.8e-13 81.6 103 46.6
Sabra13G0126600 Salix brachista HOM05D003400 ORTHO05D003687 5.7e-12 76.6 286 28.0
CARHR135740 Cardamine hirsuta HOM05D003400 ORTHO05D003687 3.1e-10 70.9 101 43.6
HanXRQChr09g0252231 Helianthus annuus HOM05D003400 ORTHO05D003687 2.0e-09 68.2 95 45.3
unitig_46.g18748 Utricularia gibba HOM05D003400 ORTHO05D003687 2.0e-09 68.2 136 31.6
AagrBONN_evm.TU.Sc2ySwM_344.4066 Anthoceros agrestis HOM05D003400 ORTHO05D003687 2.6e-09 67.8 316 26.6
Mapoly0081s0073 Marchantia polymorpha HOM05D003400 ORTHO05D003687 2.2e-08 64.7 434 23.3
SpUn1366_0010 Schrenkiella parvula HOM05D003400 ORTHO05D003687 3.8e-08 63.9 50 60.0
Sed0004704 Sechium edule HOM05D003400 ORTHO05D003687 7.2e-07 59.7 101 36.6
Gohir.A05G278550 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.6e-06 58.5 190 33.2
HanXRQChr09g0240401 Helianthus annuus HOM05D003400 ORTHO05D003687 7.9e-06 56.2 75 45.3
HanXRQChr09g0253941 Helianthus annuus HOM05D003400 ORTHO05D003687 7.9e-06 56.2 75 45.3


User provided reference genes

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