Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 3.4e-245 851.3 442 100.0
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.4e-59 232.3 121 95.0
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 6.1e-45 186.0 138 70.3
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 1.4e-44 184.9 138 71.7
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 1.1e-43 181.8 138 68.8
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 2.2e-42 177.6 137 67.9
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 1.1e-38 165.2 137 62.8
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.6e-37 161.4 120 67.5
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 1.8e-36 157.9 135 62.2
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.8e-36 157.9 132 62.1
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 6.7e-36 156.0 132 59.8
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.7e-36 156.0 134 60.4
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.7e-36 156.0 132 59.8
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 6.7e-36 156.0 128 64.1
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.2e-34 151.0 123 63.4
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 3.7e-34 150.2 141 58.9
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.7e-34 150.2 132 57.6
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 6.3e-34 149.4 128 60.9
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 6.3e-34 149.4 132 59.1
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 8.2e-34 149.1 132 56.8
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 1.1e-33 148.7 128 60.9
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.4e-33 148.3 128 61.7
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.4e-33 147.5 129 62.0
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 2.4e-33 147.5 137 57.7
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 2.4e-33 147.5 132 60.6
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 5.3e-33 146.4 123 61.0
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 5.3e-33 146.4 151 53.0
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 7.0e-33 146.0 209 47.8
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 7.0e-33 146.0 141 53.9
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 7.0e-33 146.0 129 60.5
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 7.0e-33 146.0 129 60.5
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 9.1e-33 145.6 142 54.9
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 9.1e-33 145.6 133 57.9
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 1.2e-32 145.2 134 59.0
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.6e-32 144.8 129 60.5
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.0e-32 144.4 141 53.2
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.6e-32 144.1 141 56.0
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 3.5e-32 143.7 141 53.9
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 4.5e-32 143.3 144 52.8
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 4.5e-32 143.3 145 54.5
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 5.9e-32 142.9 129 58.1
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.3e-31 141.7 123 56.9
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.3e-31 141.7 123 56.9
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 1.3e-31 141.7 129 58.1
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 1.3e-31 141.7 143 53.1
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 1.7e-31 141.4 149 51.0
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 2.9e-31 140.6 136 55.9
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.9e-31 140.6 137 54.0
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 3.8e-31 140.2 152 52.0
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 3.8e-31 140.2 132 56.8
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 3.8e-31 140.2 141 54.6
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 5.0e-31 139.8 129 56.6
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 6.5e-31 139.4 137 56.2
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 6.5e-31 139.4 90 71.1
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 8.5e-31 139.0 138 51.4
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.1e-30 138.7 156 51.3
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.5e-30 138.3 120 60.0
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 1.5e-30 138.3 141 56.7
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.9e-30 137.9 152 50.7
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 1.9e-30 137.9 152 49.3
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.9e-30 137.9 138 53.6
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 2.5e-30 137.5 138 53.6
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.2e-30 137.1 120 58.3
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 4.2e-30 136.7 138 52.9
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 7.2e-30 136.0 152 49.3
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.2e-29 135.2 137 54.7
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 1.2e-29 135.2 120 58.3
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.2e-29 135.2 141 52.5
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 2.7e-29 134.0 148 50.7
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 3.6e-29 133.7 143 51.7
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.6e-29 133.7 105 63.8
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 4.7e-29 133.3 156 49.4
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 8.0e-29 132.5 112 58.0
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 8.0e-29 132.5 126 54.8
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 8.0e-29 132.5 180 47.8
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 8.0e-29 132.5 154 47.4
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 8.0e-29 132.5 155 50.3
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.4e-28 131.7 127 52.8
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 2.3e-28 131.0 153 48.4
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 4.0e-28 130.2 184 46.2
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 4.0e-28 130.2 129 47.3
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 8.8e-28 129.0 111 60.4
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 1.5e-27 128.3 143 49.0
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 1.5e-27 128.3 115 57.4
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 2.0e-27 127.9 137 51.8
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 3.4e-27 127.1 137 49.6
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 5.7e-27 126.3 149 48.3
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 7.5e-27 125.9 107 58.9
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 9.8e-27 125.6 146 51.4
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 9.8e-27 125.6 132 49.2
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 1.3e-26 125.2 145 49.0
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.2e-26 124.4 132 48.5
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 8.3e-26 122.5 135 50.4
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.1e-25 122.1 160 46.2
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.8e-25 121.3 105 59.0
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 2.4e-25 120.9 238 38.2
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 2.4e-25 120.9 128 53.9
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 2.4e-25 120.9 238 38.2
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 2.4e-25 120.9 128 53.1
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 4.1e-25 120.2 128 51.6
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 4.1e-25 120.2 128 51.6
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 5.4e-25 119.8 136 52.2
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 5.4e-25 119.8 128 53.1
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 5.4e-25 119.8 128 53.1
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 5.4e-25 119.8 128 53.1
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 2.0e-24 117.9 136 50.7
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 2.0e-24 117.9 128 52.3
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 2.7e-24 117.5 153 47.7
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 4.5e-24 116.7 142 49.3
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 4.5e-24 116.7 126 47.6
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 5.9e-24 116.3 156 46.8
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 5.9e-24 116.3 90 58.9
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 5.9e-24 116.3 130 52.3
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.0e-23 115.5 129 49.6
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 1.3e-23 115.2 128 50.0
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.3e-23 115.2 132 48.5
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.2e-23 114.4 115 52.2
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 2.9e-23 114.0 139 46.8
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.5e-22 111.7 122 49.2
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 4.2e-22 110.2 135 45.9
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.6e-21 108.2 101 60.4
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 2.7e-21 107.5 137 43.8
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.0e-20 105.5 121 52.9
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 4.0e-20 103.6 139 47.5
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 9.8e-19 99.0 137 42.3
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.3e-18 98.6 120 43.3
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 2.8e-18 97.4 103 53.4
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.3e-18 96.3 127 43.3
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.3e-18 96.3 127 43.3
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 4.1e-17 93.6 134 44.0
Phvul.002G262300 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 1.2e-16 92.0 55 83.6
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 2.0e-16 91.3 139 40.3
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.0e-16 91.3 120 40.8
Psat7g053120 Pisum sativum HOM05D006072 ORTHO05D007363 4.5e-16 90.1 54 83.3
VMungo0251G2066 Vigna mungo HOM05D006072 ORTHO05D007363 4.5e-16 90.1 55 81.8
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 5.9e-16 89.7 54 83.3
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 5.9e-16 89.7 54 83.3
Ca_20317_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 7.7e-16 89.4 53 86.8
Medtr0082s0140 Medicago truncatula HOM05D006072 ORTHO05D007363 7.7e-16 89.4 53 86.8
TPR.G2161 Trifolium pratense HOM05D006072 ORTHO05D007363 7.7e-16 89.4 54 83.3
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 2.3e-15 87.8 122 41.0
Ca_17713_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 2.9e-15 87.4 55 83.6
Medtr4g075230 Medicago truncatula HOM05D006072 ORTHO05D007363 3.3e-14 84.0 54 77.8
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 5.6e-14 83.2 174 37.9
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 5.6e-14 83.2 127 37.8
Medtr8g091400 Medicago truncatula HOM05D006072 ORTHO05D007363 9.5e-14 82.4 54 77.8
Glyma.08G139000 Glycine max HOM05D006072 ORTHO05D007363 2.1e-13 81.3 51 78.4
Lj4g0019082 Lotus japonicus HOM05D006072 ORTHO05D007363 2.8e-13 80.9 57 75.4
Glyma.05G181300 Glycine max HOM05D006072 ORTHO05D007363 4.7e-13 80.1 52 75.0
Lalb_Chr07g0184981 Lupinus albus HOM05D006072 ORTHO05D007363 8.0e-13 79.3 62 72.6
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 1.0e-12 79.0 160 36.2
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 3.0e-12 77.4 87 49.4
QL06p050421 Quercus lobata HOM05D006072 ORTHO05D007363 8.9e-12 75.9 53 71.7
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.3e-10 72.0 114 42.1
arahy.Tifrunner.gnm1.ann1.4ZS2ZJ Arachis hypogaea HOM05D006072 ORTHO05D007363 1.7e-10 71.6 55 74.5
arahy.Tifrunner.gnm1.ann1.UPZ3Q7 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.7e-10 71.6 55 74.5
arahy.Tifrunner.gnm1.ann1.YR9HNH Arachis hypogaea HOM05D006072 ORTHO05D007363 1.7e-10 71.6 55 74.5
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 6.4e-10 69.7 62 62.9
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.4e-09 68.6 42 64.3
CiPaw.03G138500 Carya illinoinensis HOM05D006072 ORTHO05D007363 1.8e-09 68.2 53 69.8
Lalb_Chr12g0203671 Lupinus albus HOM05D006072 ORTHO05D007363 1.8e-09 68.2 61 67.2
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 2.4e-09 67.8 105 42.9
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 4.1e-09 67.0 133 34.6
Thecc.01G107000 Theobroma cacao HOM05D006072 ORTHO05D007363 9.2e-09 65.9 61 57.4
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 1.6e-08 65.1 62 59.7
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 4.6e-08 63.5 39 69.2
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 7.8e-08 62.8 47 59.6
Manes.12G138600 Manihot esculenta HOM05D006072 ORTHO05D007363 7.8e-08 62.8 53 69.8
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.3e-07 61.2 172 32.6
Duzib147G1157 Durio zibethinus HOM05D006072 ORTHO05D007363 3.0e-07 60.8 65 55.4
arahy.Tifrunner.gnm1.ann1.YJBK1K Arachis hypogaea HOM05D004583 ORTHO05D005469 5.0e-07 60.1 47 57.4
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 1.5e-06 58.5 54 64.8
Gohir.A11G199500 Gossypium hirsutum HOM05D006072 ORTHO05D007363 3.3e-06 57.4 60 53.3
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 4.3e-06 57.0 49 63.3
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 5.6e-06 56.6 62 50.0
Duzib187G0709 Durio zibethinus HOM05D006072 ORTHO05D007363 5.6e-06 56.6 54 59.3
Gohir.D11G224600 Gossypium hirsutum HOM05D006072 ORTHO05D007363 7.3e-06 56.2 60 53.3
Gorai.007G241900 Gossypium raimondii HOM05D006072 ORTHO05D007363 7.3e-06 56.2 60 53.3
Sabra07G0072700 Salix brachista HOM05D006072 ORTHO05D007363 9.5e-06 55.8 51 60.8


User provided reference genes

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