Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 8.8e-128 460.3 233 100.0
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 7.7e-116 420.6 217 96.8
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 2.5e-114 415.6 217 94.0
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 3.2e-114 415.2 251 86.5
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 4.9e-110 401.4 217 90.3
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.4e-109 399.8 217 91.2
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 1.6e-108 396.4 217 89.9
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 3.5e-108 395.2 217 89.9
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 7.8e-108 394.0 217 89.9
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.0e-107 393.7 226 86.7
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 1.1e-106 390.2 235 84.3
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 4.4e-103 378.3 217 87.6
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 8.3e-102 374.0 217 85.3
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.3e-99 366.7 217 82.0
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 3.0e-99 365.5 217 81.6
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 3.9e-99 365.2 211 83.4
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 3.9e-99 365.2 232 78.0
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 1.9e-98 362.8 217 82.0
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 4.3e-98 361.7 217 82.0
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 4.3e-98 361.7 217 81.6
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 4.3e-98 361.7 217 80.6
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 5.6e-98 361.3 217 80.6
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 1.2e-97 360.1 217 80.6
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 1.2e-97 360.1 217 79.7
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.1e-97 359.4 217 80.2
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 3.6e-97 358.6 217 79.3
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 3.6e-97 358.6 217 80.2
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 4.7e-97 358.2 218 79.4
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 6.2e-97 357.8 217 81.1
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.0e-96 357.1 217 79.7
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.4e-96 356.7 232 75.4
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 1.4e-96 356.7 217 79.3
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.4e-96 356.7 217 81.1
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 1.4e-96 356.7 217 81.1
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 1.8e-96 356.3 215 81.9
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.8e-96 356.3 217 79.3
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 6.8e-96 354.4 215 80.0
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 6.8e-96 354.4 217 80.6
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 1.2e-95 353.6 232 75.0
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 2.0e-95 352.8 215 80.9
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 2.0e-95 352.8 217 78.8
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 2.6e-95 352.4 217 78.8
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 3.4e-95 352.1 217 80.6
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 5.8e-95 351.3 200 85.5
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.7e-94 349.7 239 73.2
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 1.7e-94 349.7 216 79.2
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 4.9e-94 348.2 217 79.3
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 1.1e-93 347.1 217 77.9
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 1.1e-93 347.1 247 71.3
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 1.9e-93 346.3 216 79.2
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 2.4e-93 345.9 217 79.3
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 2.4e-93 345.9 218 78.9
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 2.4e-93 345.9 233 75.1
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 3.2e-93 345.5 216 77.8
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 5.4e-93 344.7 239 72.4
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 7.0e-93 344.4 216 78.2
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 7.0e-93 344.4 233 75.5
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 7.0e-93 344.4 211 80.1
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 9.2e-93 344.0 216 78.2
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 9.2e-93 344.0 216 78.2
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 1.2e-92 343.6 218 78.0
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 1.6e-92 343.2 216 78.7
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 2.0e-92 342.8 216 79.2
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 2.7e-92 342.4 216 77.8
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 2.7e-92 342.4 216 77.8
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 2.7e-92 342.4 217 77.4
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 2.7e-92 342.4 217 77.9
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 7.8e-92 340.9 217 77.4
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 1.0e-91 340.5 203 80.8
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 1.3e-91 340.1 219 75.8
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.7e-91 339.7 257 67.3
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 3.9e-91 338.6 203 80.8
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 2.5e-90 335.9 226 74.8
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 2.5e-90 335.9 204 79.9
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 3.3e-90 335.5 242 71.1
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 1.2e-89 333.6 210 76.2
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.1e-89 332.8 217 75.1
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 2.1e-89 332.8 232 72.4
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 3.6e-89 332.0 217 74.7
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 8.1e-89 330.9 217 73.3
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 8.1e-89 330.9 217 74.7
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 6.8e-88 327.8 198 80.3
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 6.8e-88 327.8 198 81.8
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 1.2e-87 327.0 198 81.8
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 1.1e-85 320.5 200 77.0
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 1.9e-85 319.7 198 78.8
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 7.1e-85 317.8 212 75.0
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 1.2e-84 317.0 198 78.8
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 4.6e-84 315.1 215 71.2
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 4.6e-84 315.1 228 67.5
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 1.0e-83 313.9 200 73.5
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 1.2e-79 300.4 217 68.7
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 5.8e-79 298.1 198 75.8
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 1.9e-77 293.1 202 69.3
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 2.4e-77 292.7 182 78.6
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 7.1e-77 291.2 219 70.8
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.7e-76 289.3 286 55.2
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.3e-75 287.0 174 82.2
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 3.0e-75 285.8 201 67.7
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 4.7e-73 278.5 214 63.6
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 2.4e-72 276.2 162 85.2
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.2e-70 269.6 207 65.7
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 3.8e-70 268.9 165 78.8
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 1.6e-68 263.5 174 72.4
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 1.0e-67 260.8 217 59.0
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.4e-61 239.6 154 77.3
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 3.5e-60 235.7 219 55.3
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 8.7e-59 231.1 286 47.9
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 3.3e-58 229.2 141 80.1
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 3.1e-56 222.6 216 52.3
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 2.0e-55 219.9 215 53.5
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 7.9e-52 208.0 130 76.9
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.0e-51 207.6 129 79.8
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 7.6e-47 191.4 143 63.6
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 4.8e-41 172.2 144 57.6
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 1.4e-40 170.6 123 67.5
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 3.8e-38 162.5 110 70.0
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 9.1e-32 141.4 206 42.7
TPR.G36912 Trifolium pratense HOM05D005313 ORTHO05D006317 1.0e-30 137.9 69 95.7
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 2.5e-29 133.3 80 75.0
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 5.5e-29 132.1 81 75.3
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.2e-28 131.0 83 73.5
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 4.7e-28 129.0 80 76.2
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 2.3e-27 126.7 79 77.2
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 1.8e-24 117.1 79 68.4
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.5e-23 114.0 181 35.4
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 1.3e-22 110.9 85 68.2
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 3.6e-20 102.8 112 51.8
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 8.8e-19 98.2 54 83.3
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 3.3e-18 96.3 128 45.3
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.7e-17 92.8 62 72.6
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.8e-11 73.9 43 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3801 Anthoceros agrestis HOM05D005313 ORTHO05D006317 3.7e-09 66.2 52 55.8


User provided reference genes

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