Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 3.0e-107 393.7 200 100.0
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 4.7e-68 263.5 201 72.6
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 1.7e-57 228.4 203 64.0
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 3.1e-51 207.6 226 55.3
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 9.9e-50 202.6 207 56.0
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 1.7e-49 201.8 204 57.4
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 6.4e-49 199.9 210 54.8
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 3.5e-47 194.1 176 57.4
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 6.6e-46 189.9 204 54.9
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 1.3e-44 185.7 188 59.0
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 2.4e-43 181.4 156 59.6
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 6.9e-43 179.9 164 54.9
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 7.6e-42 176.4 211 49.3
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 2.2e-41 174.9 157 59.2
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 1.1e-40 172.6 159 56.0
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 1.9e-40 171.8 159 56.6
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.2e-40 171.0 159 52.8
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 4.2e-40 170.6 159 55.3
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 1.2e-39 169.1 159 54.7
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 1.6e-39 168.7 159 52.2
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 3.5e-39 167.5 178 52.2
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 1.0e-38 166.0 159 54.7
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 1.3e-38 165.6 202 51.0
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 1.8e-38 165.2 142 60.6
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 3.0e-38 164.5 159 52.8
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 8.7e-38 162.9 158 53.8
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 1.5e-37 162.2 159 52.8
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 1.9e-37 161.8 208 45.7
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 2.5e-37 161.4 193 48.7
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 9.6e-37 159.5 159 50.3
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 1.3e-36 159.1 144 57.6
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 1.6e-36 158.7 151 50.3
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 6.2e-36 156.8 159 52.2
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 8.1e-36 156.4 147 51.7
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 8.1e-36 156.4 159 51.6
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 1.1e-35 156.0 233 42.5
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.4e-35 155.6 200 46.5
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 2.4e-35 154.8 220 42.3
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 2.4e-35 154.8 159 50.9
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 3.1e-35 154.5 148 53.4
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 4.0e-35 154.1 147 52.4
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 9.0e-35 152.9 159 48.4
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 9.0e-35 152.9 159 50.3
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 1.5e-34 152.1 156 52.6
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.5e-34 152.1 200 45.5
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 2.0e-34 151.8 232 40.5
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 4.5e-34 150.6 155 47.1
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 5.8e-34 150.2 158 48.1
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 9.9e-34 149.4 148 53.4
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 1.7e-33 148.7 178 41.6
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 2.2e-33 148.3 155 49.7
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 2.2e-33 148.3 189 42.3
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 2.2e-33 148.3 189 42.3
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 3.8e-33 147.5 159 50.3
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 3.8e-33 147.5 151 45.0
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 3.8e-33 147.5 189 41.8
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 4.9e-33 147.1 207 45.9
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 8.4e-33 146.4 156 46.2
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 1.1e-32 146.0 155 47.7
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 1.9e-32 145.2 221 42.5
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 4.2e-32 144.1 147 49.7
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 5.5e-32 143.7 225 41.8
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 1.2e-31 142.5 157 48.4
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 1.6e-31 142.1 158 46.8
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 6.0e-31 140.2 148 49.3
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 1.8e-30 138.7 148 50.0
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 2.3e-30 138.3 145 49.0
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 3.0e-30 137.9 155 44.5
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 3.0e-30 137.9 139 52.5
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 1.1e-29 136.0 174 47.1
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 1.5e-29 135.6 158 45.6
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 1.5e-29 135.6 158 45.6
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 1.9e-29 135.2 158 44.9
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 8.2e-28 129.8 147 47.6
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 6.9e-27 126.7 149 45.6
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 8.4e-25 119.8 193 39.4
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 1.4e-24 119.0 143 44.1
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 3.2e-24 117.9 147 42.9
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 3.5e-23 114.4 179 38.5
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 1.0e-22 112.8 155 40.6
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 1.8e-22 112.1 138 42.0
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 1.8e-22 112.1 138 42.8
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.5e-21 109.0 98 54.1
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 2.6e-18 98.2 81 63.0
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 7.7e-18 96.7 108 48.1
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 3.2e-16 91.3 111 46.8
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 7.9e-15 86.7 98 48.0
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 1.8e-14 85.5 148 33.8
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 2.8e-12 78.2 78 50.0
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 3.7e-12 77.8 79 51.9
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 7.7e-10 70.1 97 39.2
SEGI_39034 Sequoiadendron giganteum HOM05D007675 ORTHO05D009699 2.2e-09 68.6 152 28.3
TPR.G9703 Trifolium pratense HOM05D007426 ORTHO05D009167 2.2e-09 68.6 40 75.0
Zm00001eb164150 Zea mays HOM05D025020 ORTHO05D009167 5.0e-09 67.4 144 36.8
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 1.1e-08 66.2 155 32.3
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.2e-08 64.7 135 31.1
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 4.2e-08 64.3 190 27.9
Zm00001eb118640 Zea mays HOM05D025020 ORTHO05D009167 5.5e-08 63.9 136 37.5
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.6e-07 62.4 152 28.3
Oeu009601.2 Olea europaea HOM05D007639 ORTHO05D009509 1.6e-07 62.4 156 28.2
Psat2g188560 Pisum sativum HOM05D000424 ORTHO05D000355 2.1e-07 62.0 165 27.3
Psat2g188600 Pisum sativum HOM05D000424 ORTHO05D000355 2.1e-07 62.0 165 27.3
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 2.7e-07 61.6 150 26.7
Glyma.10G264500 Glycine max HOM05D000424 ORTHO05D000355 3.6e-07 61.2 139 32.4
Psat6g220560 Pisum sativum HOM05D000424 ORTHO05D000355 3.6e-07 61.2 165 27.3
Medtr1g108270 Medicago truncatula HOM05D000424 ORTHO05D000355 6.1e-07 60.5 234 26.5
Sc03g0005490 Simmondsia chinensis HOM05D007496 ORTHO05D009479 6.1e-07 60.5 139 28.1
TWI75G0531 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.9e-07 60.1 145 29.7
TWI75G0860 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.9e-07 60.1 145 29.7
TWI75G1402 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 7.9e-07 60.1 145 29.7
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 2.3e-06 58.5 152 27.6
SHI10148 Sapria himalayana HOM05D006931 ORTHO05D008782 2.3e-06 58.5 137 29.2
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 3.0e-06 58.2 163 26.4
Hund20691 Selenicereus undatus HOM05D000424 ORTHO05D000355 3.0e-06 58.2 152 28.9
TWI75G0965 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.9e-06 57.8 145 29.0
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 3.9e-06 57.8 145 29.0
CSS0043455 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 5.1e-06 57.4 138 29.0
CSS0026781 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 6.7e-06 57.0 138 29.0
Zm00001eb197020 Zea mays HOM05D025020 ORTHO05D009167 6.7e-06 57.0 141 31.9
Os01g0505500 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D000355 8.8e-06 56.6 148 25.7


User provided reference genes

Program Settings