Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 1.5e-138 496.1 241 100.0
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 3.5e-119 431.8 241 85.1
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 1.0e-115 420.2 241 83.4
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 7.0e-112 407.5 245 81.6
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 2.3e-107 392.5 250 77.6
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 5.8e-98 361.3 243 73.3
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 1.7e-97 359.8 240 71.7
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 5.4e-96 354.8 244 70.9
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 5.4e-96 354.8 242 71.9
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 4.6e-95 351.7 241 68.0
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 2.3e-94 349.4 242 70.7
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 2.3e-94 349.4 241 70.5
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 2.3e-94 349.4 245 71.0
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 3.9e-94 348.6 241 71.0
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 6.6e-94 347.8 244 67.6
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 8.6e-94 347.4 241 69.7
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 8.6e-94 347.4 241 70.1
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.1e-93 347.1 244 70.1
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.9e-93 346.3 243 67.9
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 2.5e-93 345.9 241 70.5
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 2.5e-93 345.9 241 68.0
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 4.3e-93 345.1 241 69.3
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 4.3e-93 345.1 245 68.6
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 5.6e-93 344.7 241 68.0
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 7.3e-93 344.4 250 69.2
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 7.3e-93 344.4 241 69.3
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 9.5e-93 344.0 242 68.6
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 1.6e-92 343.2 246 68.7
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.1e-92 342.8 241 68.5
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 2.8e-92 342.4 244 68.0
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 3.6e-92 342.0 242 69.4
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 3.6e-92 342.0 245 66.5
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 8.1e-92 340.9 245 67.8
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.4e-91 340.1 246 65.9
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 1.8e-91 339.7 241 68.9
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 2.3e-91 339.3 245 66.1
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 2.3e-91 339.3 241 68.9
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 2.3e-91 339.3 241 69.3
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 2.3e-91 339.3 242 69.4
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 3.1e-91 339.0 242 69.8
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 4.0e-91 338.6 241 69.3
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 1.2e-90 337.0 242 66.9
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 1.2e-90 337.0 242 66.9
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 1.2e-90 337.0 242 66.9
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.5e-90 336.7 248 66.1
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.5e-90 336.7 242 67.4
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 2.0e-90 336.3 242 66.9
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 2.0e-90 336.3 242 66.5
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 2.0e-90 336.3 242 67.4
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 2.0e-90 336.3 247 68.0
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.0e-90 336.3 243 67.1
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 2.6e-90 335.9 244 67.6
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.4e-90 335.5 249 67.5
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 3.4e-90 335.5 242 67.4
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 5.8e-90 334.7 243 67.9
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 5.8e-90 334.7 243 65.4
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 7.5e-90 334.3 249 68.3
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 7.5e-90 334.3 225 70.7
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 7.5e-90 334.3 238 66.8
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 7.5e-90 334.3 221 70.1
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 1.7e-89 333.2 242 65.7
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.7e-89 333.2 242 65.7
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 2.2e-89 332.8 248 65.3
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 4.9e-89 331.6 242 65.7
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 4.9e-89 331.6 241 66.8
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 6.4e-89 331.3 241 66.4
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 8.3e-89 330.9 242 65.3
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 8.3e-89 330.9 241 66.8
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 2.4e-88 329.3 241 67.2
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.1e-88 328.6 247 66.4
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 2.7e-87 325.9 241 65.6
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 3.5e-87 325.5 241 67.2
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 7.8e-87 324.3 241 65.1
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.3e-86 322.8 248 64.9
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 5.1e-86 321.6 243 63.0
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 1.5e-85 320.1 240 63.8
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.5e-85 319.3 242 63.6
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 2.5e-85 319.3 241 66.0
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 4.3e-85 318.5 249 63.1
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 7.6e-82 307.8 243 63.4
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.9e-81 305.1 220 68.2
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 2.4e-80 302.8 241 63.5
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 2.3e-78 296.2 221 63.3
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 1.9e-77 293.1 214 64.0
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 3.3e-77 292.4 219 64.4
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 3.3e-77 292.4 256 57.0
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 1.2e-76 290.4 252 56.7
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 2.8e-76 289.3 241 61.4
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 6.8e-75 284.6 214 62.1
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 2.6e-74 282.7 215 63.7
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 7.6e-74 281.2 249 55.4
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 6.4e-73 278.1 214 61.2
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 8.4e-73 277.7 214 61.2
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.4e-72 276.9 218 61.5
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 2.4e-72 276.2 214 60.7
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.2e-72 275.8 218 61.9
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.2e-72 275.8 218 61.0
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 4.2e-72 275.4 218 61.0
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 7.1e-72 274.6 215 60.9
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 7.1e-72 274.6 217 60.8
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 9.3e-72 274.2 214 61.2
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.7e-70 270.0 217 58.1
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 2.3e-70 269.6 214 59.8
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 5.1e-70 268.5 214 58.4
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.9e-69 266.5 214 57.9
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 4.3e-69 265.4 218 57.3
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 7.3e-69 264.6 210 58.6
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 7.3e-69 264.6 196 65.3
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 9.6e-69 264.2 214 57.5
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 9.6e-69 264.2 214 57.5
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 2.8e-68 262.7 258 55.4
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 8.1e-68 261.2 219 56.2
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 1.1e-67 260.8 218 57.3
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.4e-67 260.4 214 57.0
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 1.4e-67 260.4 217 55.3
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 2.4e-67 259.6 219 56.2
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 6.9e-67 258.1 219 56.2
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 2.6e-66 256.1 214 58.4
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 2.1e-63 246.5 214 57.0
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 3.5e-63 245.7 214 54.2
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 3.5e-63 245.7 214 54.2
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 3.9e-62 242.3 214 53.3
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 3.9e-62 242.3 214 53.3
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 8.1e-60 234.6 193 59.6
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.4e-59 233.8 213 51.6
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 9.9e-58 227.6 213 51.2
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 1.7e-57 226.9 210 53.3
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.1e-56 224.2 189 58.2
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 2.4e-56 223.0 138 77.5
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 7.1e-56 221.5 210 54.3
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 7.1e-56 221.5 180 57.2
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 6.0e-55 218.4 195 56.9
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 3.9e-54 215.7 130 78.5
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 6.7e-54 214.9 214 52.3
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-50 203.4 218 49.1
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.0e-50 203.4 218 49.1
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.7e-49 200.3 223 45.7
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 2.2e-49 199.9 166 55.4
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 1.3e-46 190.7 133 67.7
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 2.5e-45 186.4 139 66.9
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 5.3e-43 178.7 123 66.7
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 5.9e-42 175.3 185 49.7
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.2e-39 167.5 118 63.6
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 5.1e-38 162.2 357 32.2
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 4.3e-37 159.1 222 40.1
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 5.7e-37 158.7 202 48.0
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 9.7e-37 157.9 239 39.7
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 4.6e-31 139.0 106 59.4
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 4.6e-31 139.0 134 53.0
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 6.7e-30 135.2 208 37.5
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 8.8e-30 134.8 185 43.2
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 6.5e-25 118.6 244 32.4
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.4e-24 117.5 109 51.4
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 7.2e-24 115.2 176 40.3
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.1e-23 113.6 122 50.8
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 8.2e-20 101.7 65 72.3
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 5.3e-19 99.0 86 55.8
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.3e-17 94.4 90 53.3
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 8.5e-17 91.7 172 33.7
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 4.2e-16 89.4 153 38.6
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 1.6e-15 87.4 66 60.6
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 7.5e-13 78.6 69 55.1
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 9.7e-13 78.2 61 63.9
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.3e-12 77.8 57 66.7
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 6.3e-12 75.5 74 50.0
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 2.0e-10 70.5 76 47.4
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 3.8e-09 66.2 75 46.7
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 5.5e-08 62.4 51 60.8
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 7.2e-08 62.0 62 51.6


User provided reference genes

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