Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.6e-217 758.4 383 100.0
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.6e-217 758.4 383 100.0
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 7.5e-193 677.2 385 90.1
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 5.2e-186 654.4 383 86.7
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 2.6e-185 652.1 383 87.7
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 4.3e-180 634.8 374 87.2
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 2.4e-178 629.0 383 83.0
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 8.4e-176 620.5 381 83.5
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 3.2e-175 618.6 382 80.9
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 6.0e-174 614.4 381 79.8
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.7e-173 612.8 381 79.8
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 5.1e-173 611.3 381 81.6
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 2.5e-172 609.0 382 81.9
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 5.6e-172 607.8 383 80.7
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 7.3e-172 607.4 381 82.2
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 1.4e-159 566.6 387 74.7
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 6.0e-158 561.2 387 73.4
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 3.9e-157 558.5 387 73.4
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 4.3e-156 555.1 387 71.3
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 4.0e-154 548.5 385 70.9
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 8.4e-152 540.8 387 69.5
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 2.5e-151 539.3 389 69.2
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.1e-150 536.2 392 69.1
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.7e-150 535.8 387 68.7
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.6e-150 535.0 387 68.5
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.1e-149 531.6 387 68.0
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 8.7e-149 530.8 387 68.5
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.7e-149 530.8 387 68.5
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 3.3e-148 528.9 452 61.1
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 7.4e-148 527.7 383 69.2
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 9.6e-148 527.3 385 68.1
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.6e-147 526.6 386 68.9
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 1.1e-146 523.9 384 69.5
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.5e-145 520.0 387 68.2
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 5.8e-145 518.1 375 69.1
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 5.8e-145 518.1 348 78.2
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 1.0e-144 517.3 385 67.8
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 2.2e-144 516.2 384 66.1
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 6.5e-144 514.6 381 65.9
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 1.1e-143 513.8 387 66.4
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 4.2e-143 511.9 381 65.9
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 5.5e-143 511.5 413 61.7
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 5.5e-143 511.5 386 66.1
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 3.5e-142 508.8 387 65.4
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 4.6e-142 508.4 389 66.6
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 6.1e-142 508.1 386 66.1
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 1.0e-141 507.3 381 65.4
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 1.3e-141 506.9 387 65.4
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 1.5e-140 503.4 387 65.9
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 1.9e-140 503.1 383 63.4
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 3.3e-140 502.3 370 67.3
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 5.7e-140 501.5 385 66.5
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 4.8e-139 498.4 391 64.5
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 4.1e-138 495.4 376 65.2
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 6.9e-138 494.6 382 62.8
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 9.0e-138 494.2 382 63.6
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 9.0e-138 494.2 382 64.7
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.5e-137 493.4 386 63.2
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 1.7e-136 490.0 386 64.5
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 1.9e-135 486.5 388 64.9
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.2e-135 485.7 382 62.3
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 3.2e-135 485.7 391 64.5
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 7.9e-134 481.1 387 61.8
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.8e-133 479.9 391 62.9
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 3.9e-133 478.8 387 63.3
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 2.5e-132 476.1 377 65.3
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 4.3e-132 475.3 382 62.0
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 7.4e-132 474.6 387 62.0
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 9.7e-132 474.2 391 59.3
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 5.9e-129 464.9 393 58.8
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 3.8e-128 462.2 364 65.1
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 9.4e-127 457.6 389 62.2
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 2.1e-126 456.4 390 58.5
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 2.1e-126 456.4 352 66.2
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 2.1e-126 456.4 382 59.7
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 8.8e-125 451.1 392 58.4
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 3.3e-124 449.1 327 68.5
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 1.8e-122 443.4 381 58.8
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 9.1e-122 441.0 348 63.8
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.2e-121 440.7 318 69.5
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 4.5e-121 438.7 358 60.9
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 5.9e-121 438.3 371 61.7
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.5e-119 433.7 389 56.0
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 2.5e-119 433.0 387 55.8
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 7.2e-119 431.4 392 57.9
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 7.2e-119 431.4 359 58.8
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 8.0e-118 427.9 353 61.5
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 5.2e-117 425.2 383 55.6
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 5.9e-113 411.8 391 54.2
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.3e-112 410.6 351 57.8
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 2.9e-112 409.5 362 58.6
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 3.8e-112 409.1 389 55.8
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.6e-110 403.7 392 55.1
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 6.1e-110 401.7 392 54.8
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 8.0e-110 401.4 391 55.2
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.0e-109 401.0 391 55.2
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.3e-109 399.8 299 67.2
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 5.2e-109 398.7 393 55.0
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 6.8e-109 398.3 438 47.3
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 8.8e-109 397.9 451 46.8
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.0e-108 396.7 412 49.5
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 2.2e-107 393.3 359 56.8
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.3e-104 384.0 393 53.7
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 2.9e-104 382.9 393 53.4
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 7.2e-103 378.3 391 52.7
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.6e-86 323.9 264 59.8
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 8.0e-86 321.6 364 45.1
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 7.5e-84 315.1 452 38.5
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 7.5e-84 315.1 410 41.0
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 9.2e-82 308.1 354 52.0
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 8.6e-80 301.6 222 65.3
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 2.0e-76 290.4 231 68.4
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.7e-75 287.3 193 72.0
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 2.9e-75 286.6 296 49.3
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 2.1e-73 280.4 194 71.1
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 2.2e-67 260.4 282 51.8
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 3.5e-65 253.1 187 64.7
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 3.1e-61 240.0 308 41.2
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.3e-51 208.0 131 75.6
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 2.1e-46 190.7 132 72.0
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 4.9e-43 179.5 400 32.2
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.6e-38 164.5 109 75.2
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 8.1e-38 162.2 277 37.5
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-36 158.3 116 68.1
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 4.5e-36 156.4 344 30.2
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.8e-36 156.0 153 53.6
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 1.3e-35 154.8 131 60.3
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 8.4e-35 152.1 313 31.3
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 1.2e-33 148.3 166 50.6
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.5e-23 114.8 590 23.9
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.9e-23 114.4 67 74.6
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 3.7e-22 110.2 81 64.2
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 3.2e-18 97.1 117 45.3
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 5.3e-13 79.7 52 71.2
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 4.5e-12 76.6 95 47.4
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 5.0e-11 73.2 81 44.4
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 8.8e-08 62.4 114 36.8
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 1.3e-06 58.5 331 23.0
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 2.8e-06 57.4 31 80.6
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.7e-06 57.0 158 26.6


User provided reference genes

Program Settings