Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.2e-207 724.9 388 100.0
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 3.2e-207 724.9 388 100.0
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 3.3e-172 608.6 389 79.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.0e-164 582.8 390 77.4
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 4.1e-154 548.5 398 74.4
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 1.5e-135 486.9 392 66.1
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 6.8e-125 451.4 401 62.1
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 7.5e-124 448.0 412 60.9
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 3.7e-123 445.7 410 61.5
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.4e-122 443.7 410 61.0
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.7e-121 439.5 413 59.3
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.7e-120 436.8 401 60.8
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 8.6e-120 434.5 421 57.7
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 5.6e-111 405.2 397 57.4
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 1.4e-106 390.6 408 52.2
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.0e-104 384.4 408 51.2
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.3e-104 384.0 414 52.2
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 5.6e-103 378.6 422 51.2
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 5.6e-103 378.6 402 52.5
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 2.1e-102 376.7 402 50.5
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 8.1e-102 374.8 402 50.2
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.4e-101 374.0 408 50.5
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 2.4e-101 373.2 417 52.3
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 6.9e-101 371.7 413 51.8
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 9.0e-101 371.3 427 50.1
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 1.2e-100 370.9 409 50.9
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 2.0e-100 370.2 400 50.2
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 2.6e-100 369.8 429 50.3
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.6e-100 369.8 414 50.2
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.4e-100 369.4 411 50.9
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 3.8e-99 365.9 410 51.5
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 3.8e-99 365.9 420 48.1
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 4.9e-99 365.5 462 47.6
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 6.4e-99 365.2 420 48.6
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.2e-98 362.8 411 53.0
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 9.3e-98 361.3 454 47.1
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 2.1e-97 360.1 407 48.6
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 1.1e-95 354.4 329 56.8
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 3.3e-95 352.8 435 48.3
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 5.6e-95 352.1 411 52.3
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.6e-94 350.5 369 52.3
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.6e-94 350.5 369 52.3
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.1e-94 350.1 433 46.2
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 2.4e-93 346.7 395 50.1
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 9.0e-93 344.7 415 51.3
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 5.8e-92 342.0 341 55.1
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 5.8e-92 342.0 425 49.4
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 7.6e-92 341.7 413 46.2
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.3e-91 340.9 408 46.1
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.7e-91 340.5 395 47.8
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.2e-91 340.1 401 48.9
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.9e-91 339.7 388 48.2
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 3.8e-91 339.3 411 47.9
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 4.9e-91 339.0 422 48.8
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 8.4e-91 338.2 407 48.2
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.4e-90 337.4 406 46.3
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.4e-90 337.4 408 47.8
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.9e-90 337.0 425 48.7
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 2.4e-90 336.7 412 47.3
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 2.4e-90 336.7 402 47.5
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 2.4e-90 336.7 406 47.5
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 2.4e-90 336.7 395 47.8
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 4.2e-90 335.9 396 46.2
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.2e-89 334.3 423 47.3
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.6e-89 334.0 410 46.8
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.6e-89 334.0 422 46.7
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.6e-89 334.0 404 46.5
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 3.5e-89 332.8 401 47.9
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 3.5e-89 332.8 396 47.2
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 3.5e-89 332.8 394 50.0
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 7.9e-89 331.6 391 47.1
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 7.9e-89 331.6 391 47.1
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 7.9e-89 331.6 389 47.3
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.8e-88 330.5 389 46.3
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.8e-88 330.5 364 50.3
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.3e-88 330.1 396 49.2
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.3e-88 330.1 416 46.2
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.3e-88 330.1 398 46.7
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 3.0e-88 329.7 440 45.7
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 3.9e-88 329.3 389 48.1
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.1e-88 328.9 396 49.0
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 6.7e-88 328.6 396 49.0
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.1e-87 327.8 396 48.5
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.5e-87 327.4 390 47.4
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.9e-87 327.0 448 45.1
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 5.6e-87 325.5 355 54.4
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 7.4e-87 325.1 409 46.9
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 7.4e-87 325.1 395 47.1
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.6e-86 323.9 409 47.4
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 2.8e-86 323.2 404 45.3
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 8.1e-86 321.6 409 46.2
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 2.4e-85 320.1 453 44.8
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 9.0e-85 318.2 380 46.1
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.2e-84 317.8 399 48.1
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.5e-84 317.4 447 44.7
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 3.3e-79 299.7 405 45.9
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 5.8e-76 288.9 405 48.1
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 2.2e-75 287.0 396 45.5
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 4.9e-75 285.8 390 47.4
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.0e-72 278.1 389 44.0
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.0e-72 276.6 373 44.8
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.9e-72 276.2 391 44.5
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 5.7e-71 272.3 390 42.8
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 2.2e-70 270.4 390 42.8
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 3.7e-70 269.6 387 41.9
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 3.1e-69 266.5 335 47.8
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 6.9e-69 265.4 388 42.0
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.5e-68 264.2 389 41.4
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 3.2e-66 256.5 392 43.1
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.1e-65 253.8 387 41.9
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.3e-64 250.4 323 45.2
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 6.3e-62 242.3 365 42.5
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 6.9e-61 238.8 391 40.4
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 9.4e-58 228.4 383 39.4
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 3.0e-56 223.4 383 37.6
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 6.3e-54 215.7 359 38.7
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 4.1e-53 213.0 315 42.9
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 5.3e-53 212.6 376 36.7
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.5e-52 211.1 373 36.5
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 8.8e-48 195.3 360 37.2
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 3.3e-47 193.4 366 35.0
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.1e-37 159.8 661 25.6
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 1.7e-35 154.5 296 36.1
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.4e-32 144.8 356 32.0
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.0e-28 131.0 501 25.0
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 2.7e-28 130.6 326 32.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.9e-28 129.4 141 48.9
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.6e-25 121.3 144 48.6
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.6e-25 120.2 145 48.3
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 4.0e-24 116.7 136 47.8
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.4e-21 107.5 81 64.2
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 5.4e-21 106.3 86 55.8
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 1.2e-20 105.1 76 60.5
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 4.6e-20 103.2 501 22.6
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 8.6e-19 99.0 138 42.0
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 3.6e-17 93.6 75 58.7
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 3.6e-17 93.6 83 55.4
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 8.0e-17 92.4 127 37.8
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 1.4e-16 91.7 420 24.8
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 5.2e-16 89.7 151 39.1
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 6.8e-16 89.4 157 35.7
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 6.8e-16 89.4 78 53.8
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 1.2e-15 88.6 76 55.3
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.2e-15 88.6 78 52.6
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.4e-13 81.6 75 45.3
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 5.4e-13 79.7 462 22.1
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.6e-11 72.4 87 44.8
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.5e-10 71.6 160 33.8
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 7.3e-10 69.3 47 61.7
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 2.6e-07 60.8 96 35.4
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 2.2e-06 57.8 129 27.1


User provided reference genes

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