Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12395_v3 Cicer arietinum L. HOM05D003439 ORTHO05D004062 3.3e-26 120.9 61 100.0
Glyma.12G098800 Glycine max HOM05D003439 ORTHO05D004062 4.3e-26 120.6 60 100.0
VMungo1127G2094 Vigna mungo HOM05D003439 ORTHO05D004062 4.3e-26 120.6 60 100.0
Lalb_Chr19g0135881 Lupinus albus HOM05D003439 ORTHO05D004062 1.6e-25 118.6 60 98.3
Phvul.011G103600 Phaseolus vulgaris HOM05D003439 ORTHO05D004062 2.1e-25 118.2 60 98.3
Lj3g0022714 Lotus japonicus HOM05D003439 ORTHO05D004062 3.7e-25 117.5 60 98.3
Glyma.06G305800 Glycine max HOM05D003439 ORTHO05D004062 1.1e-24 115.9 60 96.7
Psat7g157240 Pisum sativum HOM05D003439 ORTHO05D004062 6.9e-24 113.2 60 93.3
FvH4_6g43170 Fragaria vesca HOM05D003439 ORTHO05D004062 3.4e-23 110.9 60 88.3
FAN02G4351 Fragaria x ananassa HOM05D003439 ORTHO05D004062 3.4e-23 110.9 60 88.3
FAN09G3949 Fragaria x ananassa HOM05D003439 ORTHO05D004062 3.4e-23 110.9 60 88.3
Prupe.3G217100 Prunus persica HOM05D003439 ORTHO05D004062 3.4e-23 110.9 60 88.3
FAN05G3766 Fragaria x ananassa HOM05D003439 ORTHO05D004062 7.6e-23 109.8 60 86.7
MD09G1109000 Malus domestica HOM05D003439 ORTHO05D004062 7.6e-23 109.8 60 86.7
TPR.G4641 Trifolium pratense HOM05D003439 ORTHO05D004062 7.6e-23 109.8 60 91.7
arahy.Tifrunner.gnm1.ann1.S34EA0 Arachis hypogaea HOM05D003439 ORTHO05D004062 1.0e-22 109.4 59 91.5
Cpa.g.sc87.77 Carica papaya HOM05D003439 ORTHO05D004062 1.0e-22 109.4 60 86.7
Duzib248G0706 Durio zibethinus HOM05D003439 ORTHO05D004062 1.0e-22 109.4 60 88.3
arahy.Tifrunner.gnm1.ann1.N0VMF0 Arachis hypogaea HOM05D003439 ORTHO05D004062 1.3e-22 109.0 59 91.5
COL.COLO4_27713 Corchorus olitorius HOM05D003439 ORTHO05D004062 1.3e-22 109.0 60 86.7
Duzib251G0240 Durio zibethinus HOM05D003439 ORTHO05D004062 1.3e-22 109.0 60 90.0
RcHm_v2.0_Chr2g0159271 Rosa chinensis HOM05D003439 ORTHO05D004062 1.3e-22 109.0 60 86.7
Thecc.02G314800 Theobroma cacao HOM05D003439 ORTHO05D004062 1.3e-22 109.0 60 86.7
Sed0026537 Sechium edule HOM05D003439 ORTHO05D004062 2.2e-22 108.2 60 85.0
Dinv39712 Davidia involucrata HOM05D003439 ORTHO05D004062 2.9e-22 107.8 60 83.3
Medtr4g048220 Medicago truncatula HOM05D003439 ORTHO05D004062 2.9e-22 107.8 60 88.3
Sed0015779 Sechium edule HOM05D003439 ORTHO05D004062 2.9e-22 107.8 60 86.7
Ciclev10014908m.g Citrus clementina HOM05D003439 ORTHO05D004062 3.8e-22 107.5 60 83.3
TWI36G1050 Tripterygium wilfordii HOM05D003439 ORTHO05D004062 3.8e-22 107.5 60 85.0
CSS0041453 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 5.0e-22 107.1 60 85.0
CiPaw.03G159900 Carya illinoinensis HOM05D003439 ORTHO05D004062 5.0e-22 107.1 60 83.3
MD17G1097000 Malus domestica HOM05D003439 ORTHO05D004062 5.0e-22 107.1 60 85.0
GSVIVG01030423001 Vitis vinifera HOM05D003439 ORTHO05D004062 5.0e-22 107.1 60 85.0
Cc05_g04590 Coffea canephora HOM05D003439 ORTHO05D004062 6.5e-22 106.7 60 85.0
DCAR_019274 Daucus carota HOM05D003439 ORTHO05D004062 6.5e-22 106.7 60 83.3
Peaxi162Scf00389g00814 Petunia axillaris HOM05D003439 ORTHO05D004062 6.5e-22 106.7 60 81.7
Gohir.A03G108400 Gossypium hirsutum HOM05D003439 ORTHO05D004062 8.5e-22 106.3 60 85.0
Nitab4.5_0001213g0070 Nicotiana tabacum HOM05D003439 ORTHO05D004062 8.5e-22 106.3 60 83.3
Nitab4.5_0006567g0010 Nicotiana tabacum HOM05D003439 ORTHO05D004062 8.5e-22 106.3 60 81.7
Cfa014399 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.1e-21 105.9 60 83.3
Haze_12863 Corylus avellana HOM05D003439 ORTHO05D004062 1.1e-21 105.9 60 83.3
Migut.M00436 Erythranthe guttata HOM05D003439 ORTHO05D004062 1.1e-21 105.9 60 85.0
Gohir.D02G133600 Gossypium hirsutum HOM05D003439 ORTHO05D004062 1.1e-21 105.9 60 83.3
Gorai.005G149600 Gossypium raimondii HOM05D003439 ORTHO05D004062 1.1e-21 105.9 60 83.3
SalBow7G1393 Salvia bowleyana HOM05D003439 ORTHO05D004062 1.1e-21 105.9 60 81.7
CAN.G80.46 Capsicum annuum HOM05D003439 ORTHO05D004062 1.4e-21 105.5 60 81.7
Potri.002G229100 Populus trichocarpa HOM05D003439 ORTHO05D004062 1.4e-21 105.5 60 81.7
QL08p033044 Quercus lobata HOM05D003439 ORTHO05D004062 1.4e-21 105.5 60 81.7
CAN.G553.19 Capsicum annuum HOM05D003439 ORTHO05D004062 1.9e-21 105.1 60 81.7
HanXRQChr05g0144141 Helianthus annuus HOM05D003439 ORTHO05D004062 1.9e-21 105.1 60 81.7
Sopen12g001820 Solanum pennellii HOM05D003439 ORTHO05D004062 1.9e-21 105.1 60 80.0
ClCG02G008740 Citrullus lanatus HOM05D003439 ORTHO05D004062 2.5e-21 104.8 60 83.3
CsaV3_2G034930 Cucumis sativus L. HOM05D003439 ORTHO05D004062 2.5e-21 104.8 60 83.3
MBI02_g21885_MAGBIO Magnolia biondii HOM05D003439 ORTHO05D004062 2.5e-21 104.8 60 83.3
PGR042G0375 Punica granatum HOM05D003439 ORTHO05D004062 2.5e-21 104.8 60 83.3
Sabra02G0175100 Salix brachista HOM05D003439 ORTHO05D004062 3.2e-21 104.4 60 80.0
ECA232G2998 Erigeron canadensis HOM05D003439 ORTHO05D004062 4.2e-21 104.0 60 80.0
Potri.014G153500 Populus trichocarpa HOM05D003439 ORTHO05D004062 4.2e-21 104.0 60 81.7
THA.LOC104800990 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 4.2e-21 104.0 60 83.3
Atru.chr6.3186 Acer truncatum HOM05D003439 ORTHO05D004062 5.5e-21 103.6 60 80.0
MELO3C019269.2 Cucumis melo HOM05D003439 ORTHO05D004062 5.5e-21 103.6 60 81.7
Manes.12G066600 Manihot esculenta HOM05D003439 ORTHO05D004062 5.5e-21 103.6 60 81.7
SGA_v2.0_scaffold34G13839 Striga asiatica HOM05D003439 ORTHO05D004062 7.2e-21 103.2 59 81.4
Aqoxy1G02139 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 9.3e-21 102.8 60 80.0
Lj1C765G0 Lonicera japonica HOM05D003439 ORTHO05D004062 9.3e-21 102.8 60 81.7
vmacro12203 Vaccinium macrocarpon HOM05D003439 ORTHO05D004062 9.3e-21 102.8 60 80.0
Aqoxy2G04140 Aquilegia oxysepala HOM05D003439 ORTHO05D004062 1.2e-20 102.4 60 80.0
Oeu041919.3 Olea europaea HOM05D003439 ORTHO05D004062 1.2e-20 102.4 60 83.3
Sabra14G0116100 Salix brachista HOM05D003439 ORTHO05D004062 1.2e-20 102.4 60 78.3
Solyc12g005870.3 Solanum lycopersicum HOM05D003439 ORTHO05D004062 1.2e-20 102.4 60 76.7
PGSC0003DMG400027403 Solanum tuberosum HOM05D003439 ORTHO05D004062 1.2e-20 102.4 60 78.3
THA.LOC104816043 Tarenaya hassleriana HOM05D003439 ORTHO05D004062 1.2e-20 102.4 60 80.0
Eucgr.A01125 Eucalyptus grandis HOM05D003439 ORTHO05D004062 1.6e-20 102.1 60 80.0
Eucgr.A01128 Eucalyptus grandis HOM05D003439 ORTHO05D004062 1.6e-20 102.1 60 80.0
TAR627G1083 Trochodendron aralioides HOM05D003439 ORTHO05D004062 1.6e-20 102.1 60 80.0
A08p36540 Brassica napus HOM05D003439 ORTHO05D004062 3.6e-20 100.9 60 80.0
Solyc11g072460.2 Solanum lycopersicum HOM05D003439 ORTHO05D004062 3.6e-20 100.9 60 76.7
Sopen11g030100 Solanum pennellii HOM05D003439 ORTHO05D004062 3.6e-20 100.9 60 76.7
TAR629G2369 Trochodendron aralioides HOM05D003439 ORTHO05D004062 3.6e-20 100.9 60 80.0
Lsat_1_v5_gn_9_43200 Lactuca sativa HOM05D003439 ORTHO05D004062 4.6e-20 100.5 60 78.3
CSS0047283 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 6.1e-20 100.1 59 78.0
Thhalv10007362m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 6.1e-20 100.1 60 78.3
AL1G14940 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 7.9e-20 99.8 60 78.3
BcaC07g36858 Brassica carinata HOM05D003439 ORTHO05D004062 7.9e-20 99.8 60 80.0
C08p01780 Brassica napus HOM05D003439 ORTHO05D004062 7.9e-20 99.8 60 80.0
BolC8t46978H Brassica oleracea HOM05D003439 ORTHO05D004062 7.9e-20 99.8 60 80.0
BcaC07g42149 Brassica carinata HOM05D003439 ORTHO05D004062 1.0e-19 99.4 60 78.3
C08p51960 Brassica napus HOM05D003439 ORTHO05D004062 1.0e-19 99.4 60 78.3
BolC8t52726H Brassica oleracea HOM05D003439 ORTHO05D004062 1.0e-19 99.4 60 78.3
CANSAT64G1323 Cannabis sativa HOM05D003439 ORTHO05D004062 1.0e-19 99.4 60 80.0
Nn1g07136 Nelumbo nucifera HOM05D003439 ORTHO05D004062 1.0e-19 99.4 60 80.0
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 1.3e-19 99.0 60 73.3
unitig_0.g729 Utricularia gibba HOM05D003439 ORTHO05D004062 1.3e-19 99.0 60 76.7
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.8e-19 98.6 59 78.0
MSTRG.6579 Avicennia marina HOM05D003439 ORTHO05D004062 2.3e-19 98.2 60 78.3
BraA08t35555Z Brassica rapa HOM05D003439 ORTHO05D004062 2.3e-19 98.2 60 78.3
A10p03710 Brassica napus HOM05D003439 ORTHO05D004062 3.0e-19 97.8 60 76.7
C05p03410 Brassica napus HOM05D003439 ORTHO05D004062 3.0e-19 97.8 60 76.7
BolC5t29120H Brassica oleracea HOM05D003439 ORTHO05D004062 3.0e-19 97.8 60 76.7
BraA10t42644Z Brassica rapa HOM05D003439 ORTHO05D004062 3.0e-19 97.8 60 76.7
CARHR004640 Cardamine hirsuta HOM05D003439 ORTHO05D004062 3.9e-19 97.4 60 75.0
EL10Ac8g19506 Beta vulgaris HOM05D003439 ORTHO05D004062 5.1e-19 97.1 59 78.0
AT1G05180 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 6.7e-19 96.7 60 75.0
CAN.G982.33 Capsicum annuum HOM05D000433 ORTHO05D000443 6.7e-19 96.7 60 73.3
Hund02040 Selenicereus undatus HOM05D003439 ORTHO05D004062 6.7e-19 96.7 59 79.7
ATR0794G065 Amborella trichopoda HOM05D003439 ORTHO05D004062 8.7e-19 96.3 60 71.7
PSO541G1862 Papaver somniferum HOM05D003439 ORTHO05D004062 8.7e-19 96.3 60 75.0
PSO675G5573 Papaver somniferum HOM05D003439 ORTHO05D004062 8.7e-19 96.3 60 75.0
BcaNung05930 Brassica carinata HOM05D003439 ORTHO05D004062 1.1e-18 95.9 60 75.0
Sp1g04030 Schrenkiella parvula HOM05D003439 ORTHO05D004062 1.5e-18 95.5 60 73.3
SpUn0024_0110 Schrenkiella parvula HOM05D003439 ORTHO05D004062 1.5e-18 95.5 60 73.3
A09p67580 Brassica napus HOM05D003439 ORTHO05D004062 1.9e-18 95.1 60 75.0
SHI10354 Sapria himalayana HOM05D003439 ORTHO05D004062 1.9e-18 95.1 60 71.7
CDE11G0886 Ceratophyllum demersum HOM05D003439 ORTHO05D004062 2.5e-18 94.7 60 71.7
Carub.0001s0445 Capsella rubella HOM05D003439 ORTHO05D004062 4.3e-18 94.0 60 76.7
AUR62032477 Chenopodium quinoa HOM05D003439 ORTHO05D004062 7.4e-18 93.2 60 73.3
AUR62043065 Chenopodium quinoa HOM05D003439 ORTHO05D004062 4.8e-17 90.5 59 71.2
Os03g0820100 Oryza sativa ssp. japonica HOM05D003439 ORTHO05D004062 4.8e-17 90.5 60 65.0
CAN.G335.19 Capsicum annuum HOM05D003439 ORTHO05D000484 8.2e-17 89.7 60 66.7
HPP92_015981 Vanilla planifolia HOM05D003439 ORTHO05D004062 8.2e-17 89.7 60 66.7
Zm00001eb062550 Zea mays HOM05D003439 ORTHO05D004062 1.1e-16 89.4 60 68.3
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.4e-16 89.0 60 70.0
Pp3c14_7440 Physcomitrium patens HOM05D003439 ORTHO05D004062 1.8e-16 88.6 60 66.7
Pp3c2_11270 Physcomitrium patens HOM05D003439 ORTHO05D004062 3.1e-16 87.8 60 65.0
CAN.G162.15 Capsicum annuum HOM05D003439 ORTHO05D004062 4.1e-16 87.4 59 69.5
Carub.0004s1376 Capsella rubella HOM05D003439 ORTHO05D004062 5.3e-16 87.0 60 65.0
BraA05t20259Z Brassica rapa HOM05D003439 ORTHO05D004062 6.9e-16 86.7 59 67.8
Thhalv10016512m.g Eutrema salsugineum HOM05D003439 ORTHO05D004062 9.0e-16 86.3 60 65.0
AT2G32410 Arabidopsis thaliana HOM05D003439 ORTHO05D004062 2.0e-15 85.1 59 66.1
A05p13180 Brassica napus HOM05D003439 ORTHO05D004062 4.5e-15 84.0 59 64.4
Sp4g14780 Schrenkiella parvula HOM05D003439 ORTHO05D004062 4.5e-15 84.0 60 63.3
BcaC02g11324 Brassica carinata HOM05D003439 ORTHO05D004062 7.7e-15 83.2 60 63.3
C04p17240 Brassica napus HOM05D003439 ORTHO05D004062 7.7e-15 83.2 60 63.3
BolC4t23276H Brassica oleracea HOM05D003439 ORTHO05D004062 7.7e-15 83.2 60 63.3
Mapoly0005s0094 Marchantia polymorpha HOM05D003439 ORTHO05D004062 7.7e-15 83.2 60 63.3
AL4G27800 Arabidopsis lyrata HOM05D003439 ORTHO05D004062 1.7e-14 82.0 59 61.0
BcaB02g10470 Brassica carinata HOM05D003439 ORTHO05D004062 1.7e-14 82.0 60 63.3
AagrBONN_evm.TU.Sc2ySwM_228.3702 Anthoceros agrestis HOM05D003439 ORTHO05D004062 1.1e-13 79.3 60 60.0
CARHR126230 Cardamine hirsuta HOM05D003439 ORTHO05D004062 1.1e-13 79.3 60 58.3
Zm00001eb211770 Zea mays HOM05D003439 ORTHO05D004062 3.2e-13 77.8 54 63.0
CBR_g50442 Chara braunii HOM05D003439 ORTHO05D004062 7.2e-13 76.6 60 55.0
CBR_g55862 Chara braunii HOM05D003439 ORTHO05D004062 9.4e-13 76.3 60 55.0
SGA_v2.0_scaffold70G23396 Striga asiatica HOM05D003439 ORTHO05D004062 4.4e-10 67.4 60 61.7
PRCOL_00002650 Prasinoderma coloniale HOM05D003439 ORTHO05D004062 5.7e-10 67.0 61 57.4
arahy.Tifrunner.gnm1.ann1.550YKG Arachis hypogaea HOM05D000591 ORTHO05D087396 1.3e-06 55.8 35 77.1
Cre01.g002350 Chlamydomonas reinhardtii HOM05D003439 ORTHO05D004062 2.2e-06 55.1 35 71.4
SMO140G0107 Selaginella moellendorffii HOM05D003439 ORTHO05D004062 2.9e-06 54.7 60 45.0


User provided reference genes

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