Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 2666.3 1366 100.0
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 2639.0 1391 97.9
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 2321.6 1386 87.1
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 2226.8 1369 85.0
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 2095.1 1383 79.1
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 2068.9 1368 78.2
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1956.8 1368 75.0
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1929.5 1351 74.9
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 1841.6 1368 71.2
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1806.2 1553 63.6
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1718.4 1602 59.9
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1567.0 1408 60.1
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1558.5 1430 58.7
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1520.0 1376 59.2
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1518.4 1344 60.5
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1510.7 1378 59.7
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1507.7 1387 58.4
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1506.1 1387 58.5
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1505.3 1406 58.9
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1501.5 1387 58.4
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1494.2 1387 58.3
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1489.2 1403 58.5
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1482.6 1386 58.5
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1469.5 1386 58.2
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1463.0 1398 56.9
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1448.3 1385 57.9
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1439.1 1459 55.3
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1431.4 1379 57.3
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1421.0 1410 56.2
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1416.4 1402 57.3
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1413.7 1387 55.9
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1407.9 1368 56.9
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1404.0 1418 56.4
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1402.9 1382 55.4
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1384.8 1411 54.1
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1382.9 1479 53.3
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1377.8 1401 54.2
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1369.4 1399 54.2
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1362.1 1220 60.1
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1361.3 1373 54.5
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1359.0 1410 53.3
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1354.7 1418 53.3
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1347.8 1353 56.5
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1341.6 1410 52.8
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1340.1 1395 54.4
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1337.4 1407 53.3
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1330.5 1385 53.2
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1329.7 1386 53.5
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1325.1 1374 53.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1323.9 1407 51.9
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1315.1 1385 52.9
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1312.4 1384 53.3
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1309.7 1380 52.9
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1296.6 1426 51.3
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1293.5 1397 52.0
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1291.9 1374 52.3
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1289.6 1443 51.7
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1284.2 1395 53.8
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1283.5 1392 52.9
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1282.7 1369 52.8
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1274.6 1372 52.7
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1273.1 1373 51.9
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1263.4 1507 50.5
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1257.3 1371 52.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1256.9 1389 52.2
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1252.3 1373 52.1
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1248.4 1371 51.9
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1246.5 1371 51.9
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1245.7 1371 51.9
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1241.1 1368 52.7
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1229.2 1442 48.7
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1226.8 1368 51.5
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1223.0 1393 50.2
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1205.7 1415 48.0
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1189.5 1378 50.7
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1172.9 1142 56.8
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1152.1 1391 49.5
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1108.2 1398 46.4
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 6.4e-295 1018.1 1142 52.3
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 7.9e-293 1011.1 1046 53.0
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 3.9e-292 1008.8 634 83.8
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.4e-286 989.6 1017 55.1
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 4.3e-283 978.8 1015 54.4
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 7.9e-269 931.4 1193 46.4
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.5e-246 856.7 1069 49.3
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 8.0e-245 851.7 1367 39.4
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.7e-242 844.0 809 56.2
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 9.1e-233 811.6 872 53.6
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 1.6e-232 810.8 725 60.3
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 3.4e-227 793.1 704 58.4
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 6.6e-199 699.1 850 48.6
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 3.6e-197 693.3 1368 36.6
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 1.9e-185 654.4 1426 33.8
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 4.2e-161 573.5 522 59.4
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 9.6e-158 562.4 1428 31.1
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 6.5e-154 549.7 445 65.2
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 3.0e-151 540.8 445 63.4
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 6.1e-136 490.0 341 73.3
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 3.9e-135 487.3 563 49.4
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.0e-134 485.0 665 40.8
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 3.7e-133 480.7 386 64.5
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 1.6e-128 465.3 558 48.4
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 2.2e-125 454.9 425 62.6
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 5.9e-115 420.2 1009 31.7
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.4e-95 355.9 269 67.7
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.6e-88 332.4 474 40.1
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 1.4e-84 319.3 380 50.3
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 1.2e-78 299.7 755 34.0
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 9.2e-76 290.0 479 40.3
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 2.3e-74 285.4 575 36.5
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.0e-71 274.6 367 44.1
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 8.4e-69 266.9 147 90.5
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.5e-59 235.0 467 35.8
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 1.0e-58 233.4 231 55.8
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 1.6e-56 226.1 233 54.1
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 1.5e-54 219.5 611 32.6
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 4.5e-54 218.0 354 40.4
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.8e-54 217.6 159 69.2
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.4e-52 213.0 138 74.6
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 4.6e-51 208.0 150 73.3
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 6.0e-51 207.6 172 60.5
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 9.6e-49 200.3 223 49.8
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 5.3e-47 194.5 147 67.3
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.3e-45 189.9 194 56.2
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 2.8e-40 172.2 270 39.3
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 2.9e-37 162.2 87 92.0
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.2e-35 156.8 1240 22.0
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 2.3e-34 152.5 164 51.2
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 3.3e-33 148.7 282 36.5
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 7.4e-33 147.5 215 45.6
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 6.9e-31 141.0 138 54.3
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 3.8e-29 135.2 1254 22.6
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 4.7e-27 128.3 272 32.7
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 5.1e-26 124.8 418 29.2
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 1.7e-24 119.8 154 44.8
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 2.4e-23 115.9 79 68.4
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 1.2e-22 113.6 98 60.2
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 2.6e-22 112.5 61 93.4
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 7.7e-22 110.9 292 28.1
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 7.7e-22 110.9 166 43.4
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.9e-20 106.3 107 52.3
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.0e-18 100.5 90 54.4
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 1.0e-18 100.5 53 92.5
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 8.8e-18 97.4 127 48.8
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 4.4e-17 95.1 568 22.0
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 7.4e-17 94.4 61 67.2
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 2.2e-16 92.8 106 54.7
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.8e-15 89.7 79 55.7
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 5.9e-14 84.7 65 69.2
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 3.2e-12 79.0 87 43.7
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.7e-11 75.9 149 38.3
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 3.6e-11 75.5 123 36.6
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 4.7e-11 75.1 149 38.3
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 6.1e-11 74.7 73 49.3
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.0e-11 74.3 140 36.4
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.0e-10 73.9 129 37.2
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 3.0e-10 72.4 109 41.3
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 5.2e-10 71.6 109 41.3
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 9.7e-09 67.4 95 42.1
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.4e-07 62.8 133 34.6
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 9.1e-07 60.8 66 51.5
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 2.0e-06 59.7 182 26.9
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 2.7e-06 59.3 134 32.1
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 3.5e-06 58.9 95 38.9


User provided reference genes

Program Settings