Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.1e-251 870.5 424 100.0
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 5.1e-251 870.5 424 100.0
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 3.3e-213 745.0 424 84.7
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 1.0e-206 723.4 429 83.2
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 4.1e-184 648.3 421 75.5
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 6.6e-182 641.0 411 75.7
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 2.8e-180 635.6 411 74.2
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 4.7e-180 634.8 425 72.2
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 1.8e-179 632.9 414 72.2
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 4.0e-179 631.7 420 71.2
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 4.0e-179 631.7 418 72.0
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 2.6e-178 629.0 419 71.8
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 6.4e-177 624.4 419 70.4
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 3.2e-176 622.1 422 73.5
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 4.2e-176 621.7 421 70.8
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 9.3e-176 620.5 421 70.3
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 1.6e-175 619.8 418 73.2
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 2.7e-175 619.0 426 70.4
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 3.5e-175 618.6 432 69.4
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 6.0e-175 617.8 418 70.8
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.0e-174 615.5 415 71.8
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 6.6e-174 614.4 426 70.9
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.5e-173 613.2 415 71.6
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 1.9e-173 612.8 415 71.3
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 2.5e-173 612.5 422 70.1
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 4.3e-173 611.7 411 71.3
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.8e-171 606.3 431 67.7
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 1.8e-171 606.3 414 68.6
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 5.3e-171 604.7 427 67.9
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.2e-170 603.6 423 67.4
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 7.6e-170 600.9 423 67.6
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 1.3e-169 600.1 427 68.4
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.3e-169 600.1 422 69.2
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 3.8e-169 598.6 426 67.1
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 3.8e-169 598.6 415 68.4
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 6.4e-169 597.8 428 68.5
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 8.4e-169 597.4 426 68.1
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.4e-168 596.7 432 68.1
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 4.2e-168 595.1 421 69.4
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 4.2e-168 595.1 428 68.5
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.0e-166 590.5 420 68.8
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.3e-166 590.1 424 68.6
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 1.3e-166 590.1 417 70.5
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 1.8e-166 589.7 441 65.8
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 3.0e-166 589.0 453 65.3
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 3.9e-166 588.6 417 68.1
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 5.1e-166 588.2 423 69.0
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 8.7e-166 587.4 420 67.9
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 8.7e-166 587.4 418 68.2
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 3.3e-165 585.5 425 68.5
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 5.6e-165 584.7 423 69.0
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 1.6e-164 583.2 423 68.6
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 2.1e-164 582.8 423 68.3
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 4.8e-164 581.6 423 68.8
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 6.2e-164 581.3 421 68.9
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 8.1e-164 580.9 415 68.4
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 8.1e-164 580.9 417 66.2
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 1.1e-163 580.5 428 66.8
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-163 580.1 423 68.6
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 1.8e-163 579.7 427 65.8
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 3.1e-163 578.9 425 66.8
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 4.0e-163 578.6 421 67.9
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 4.0e-163 578.6 426 65.7
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 5.3e-163 578.2 428 65.0
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 5.3e-163 578.2 427 64.9
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 9.0e-163 577.4 426 68.1
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 1.2e-162 577.0 425 65.9
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 1.5e-162 576.6 422 67.8
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-162 576.2 426 67.8
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 2.0e-162 576.2 421 67.5
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 5.8e-162 574.7 423 67.6
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 7.6e-162 574.3 426 67.8
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 1.7e-161 573.2 424 65.8
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.7e-161 573.2 421 65.6
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 8.4e-161 570.9 409 68.0
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 8.4e-161 570.9 418 66.7
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.1e-160 570.5 419 67.1
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 1.4e-160 570.1 432 66.0
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 2.4e-160 569.3 422 67.1
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 3.2e-160 568.9 423 63.8
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 1.2e-159 567.0 409 66.5
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 2.1e-159 566.2 414 68.1
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 2.1e-159 566.2 414 68.1
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 2.1e-159 566.2 409 68.0
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 3.3e-157 558.9 418 64.1
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 4.3e-157 558.5 427 63.7
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 1.1e-155 553.9 418 64.4
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 1.8e-155 553.1 421 64.1
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 3.1e-155 552.4 428 62.9
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.2e-154 550.4 409 66.7
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 6.5e-153 544.7 435 61.8
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.1e-151 539.7 415 63.1
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 7.9e-151 537.7 420 64.0
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 5.1e-150 535.0 420 61.2
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 8.7e-150 534.3 414 63.5
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.5e-149 533.5 429 62.9
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 1.9e-149 533.1 420 61.0
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.5e-149 532.7 416 62.5
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 4.3e-149 531.9 414 63.0
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 2.8e-148 529.3 419 63.2
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 8.2e-148 527.7 305 82.6
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 7.6e-146 521.2 425 59.1
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 7.6e-146 521.2 398 63.8
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 2.5e-144 516.2 421 61.0
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 9.4e-144 514.2 414 63.3
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 1.2e-143 513.8 424 61.1
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 1.8e-142 510.0 420 60.5
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.3e-142 509.6 422 60.9
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.3e-140 503.8 417 61.9
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 1.4e-139 500.4 410 59.5
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 4.1e-139 498.8 428 56.1
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 6.9e-139 498.0 428 55.6
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 7.7e-138 494.6 421 58.2
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 2.5e-136 489.6 420 56.0
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 7.2e-136 488.0 355 67.6
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.7e-135 486.1 450 54.0
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 8.8e-134 481.1 428 57.9
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 7.7e-130 468.0 395 56.7
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 8.8e-126 454.5 414 53.6
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 5.7e-125 451.8 402 57.0
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 1.8e-115 420.2 433 51.0
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 4.0e-110 402.5 223 86.1
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 7.0e-107 391.7 418 46.9
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 1.2e-106 391.0 295 61.4
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 2.9e-105 386.3 411 49.4
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 3.6e-103 379.4 413 46.7
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.6e-101 373.2 347 52.2
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.9e-100 369.0 423 49.4
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.5e-98 362.5 423 49.4
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 5.9e-98 362.1 273 63.4
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 1.5e-85 320.9 239 64.9
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.3e-80 302.8 295 50.5
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 1.2e-77 294.7 411 38.7
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 6.2e-71 272.3 247 57.5
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 1.6e-55 221.1 154 69.5
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 3.8e-52 209.9 307 38.8
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 2.1e-50 204.1 135 67.4
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 2.1e-47 194.1 160 58.8
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 6.2e-47 192.6 128 66.4
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 2.9e-44 183.7 145 62.8
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 4.6e-42 176.4 113 69.9
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 3.3e-40 170.2 127 68.5
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.1e-35 155.2 210 45.2
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.6e-34 151.4 115 67.0
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 3.3e-32 143.7 156 53.2
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.5e-29 134.8 407 25.1
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 4.1e-22 110.2 78 67.9
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 4.5e-21 106.7 79 63.3
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.4e-19 101.7 76 61.8
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 1.9e-19 101.3 71 67.6
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 4.2e-19 100.1 98 55.1
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 5.5e-19 99.8 80 58.8
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-17 95.1 92 56.5
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 6.3e-15 86.3 88 45.5
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-14 85.1 60 61.7
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 2.5e-11 74.3 150 30.0
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 4.2e-11 73.6 67 56.7
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 4.2e-11 73.6 63 58.7
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 1.8e-09 68.2 48 60.4
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 3.9e-09 67.0 58 62.1
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 7.4e-08 62.8 55 60.0
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.4e-06 58.5 73 37.0
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 3.1e-06 57.4 35 71.4
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 7.0e-06 56.2 104 33.7


User provided reference genes

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