Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 5.9e-172 607.4 308 100.0
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.7e-147 526.2 308 88.3
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 1.4e-144 516.5 307 86.0
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 7.3e-138 494.2 306 80.7
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 4.0e-136 488.4 306 79.1
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 3.7e-134 481.9 306 79.7
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 3.2e-133 478.8 306 79.7
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 1.1e-130 470.3 306 77.8
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.5e-130 469.2 306 78.4
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 6.2e-121 438.0 321 71.0
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.2e-119 433.7 276 77.2
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.7e-118 429.9 275 78.9
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 1.7e-118 429.9 267 77.9
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 6.4e-118 427.9 298 73.5
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 6.4e-118 427.9 298 73.5
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.1e-117 427.2 235 91.5
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 5.4e-117 424.9 266 77.8
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 4.6e-116 421.8 267 78.7
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 1.0e-115 420.6 276 77.5
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.0e-115 420.6 309 70.2
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 1.1e-114 417.2 274 74.5
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.9e-114 416.4 271 77.1
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 3.3e-114 415.6 266 77.4
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 5.6e-114 414.8 271 76.8
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 5.6e-114 414.8 259 79.2
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 7.3e-114 414.5 271 75.3
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 9.6e-114 414.1 272 76.8
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 9.6e-114 414.1 270 75.9
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 3.6e-113 412.1 266 75.2
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 3.6e-113 412.1 270 73.0
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 3.6e-113 412.1 309 69.9
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 4.7e-113 411.8 265 77.0
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 4.7e-113 411.8 266 75.6
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 6.2e-113 411.4 271 75.3
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 6.2e-113 411.4 278 74.8
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 8.1e-113 411.0 290 72.4
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.4e-112 410.2 282 72.7
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.4e-112 410.2 270 74.1
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.4e-112 410.2 286 71.7
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.8e-112 409.8 266 74.4
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 2.4e-112 409.5 265 75.8
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.4e-112 409.5 304 71.1
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 3.1e-112 409.1 282 73.0
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 4.0e-112 408.7 293 71.7
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 4.0e-112 408.7 276 74.3
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 5.2e-112 408.3 269 74.7
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 6.9e-112 407.9 284 72.2
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 6.9e-112 407.9 261 76.2
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 9.0e-112 407.5 279 73.5
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 2.0e-111 406.4 297 70.0
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.6e-111 406.0 332 65.1
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.4e-111 405.2 265 74.7
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 4.4e-111 405.2 285 71.9
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 7.6e-111 404.4 297 70.0
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 9.9e-111 404.1 265 75.1
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.3e-110 403.7 271 74.5
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.3e-110 403.7 269 73.6
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.7e-110 403.3 264 75.4
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 2.2e-110 402.9 270 73.3
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 5.4e-109 398.3 297 66.3
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 9.3e-109 397.5 274 74.1
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 1.6e-108 396.7 299 68.2
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.1e-108 396.4 304 68.4
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 2.7e-108 396.0 276 72.8
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 2.7e-108 396.0 276 72.8
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 2.7e-108 396.0 277 72.6
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 4.6e-108 395.2 235 83.8
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.3e-107 393.7 271 73.4
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 2.3e-107 392.9 318 66.0
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 3.0e-107 392.5 269 71.0
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 3.9e-107 392.1 271 71.2
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 8.7e-107 391.0 266 74.4
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.1e-106 390.6 278 70.5
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.9e-106 389.8 278 70.5
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 1.6e-105 386.7 291 68.0
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 2.1e-105 386.3 276 71.4
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.8e-104 383.3 286 64.7
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 5.3e-104 381.7 267 73.0
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.4e-103 379.0 273 70.7
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 3.4e-103 379.0 273 70.7
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 7.6e-103 377.9 262 71.0
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.3e-102 377.1 239 77.4
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.3e-102 377.1 289 66.4
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 8.4e-102 374.4 230 79.6
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 8.4e-102 374.4 231 79.2
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 8.4e-102 374.4 290 62.8
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 3.2e-101 372.5 283 67.1
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 2.1e-100 369.8 302 62.6
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 2.7e-100 369.4 266 69.5
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 6.0e-100 368.2 288 65.6
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 2.5e-98 362.8 273 68.1
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 2.5e-98 362.8 318 59.1
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.6e-97 360.1 293 62.5
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 3.1e-96 355.9 374 52.9
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 2.1e-92 343.2 261 67.0
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 6.7e-91 338.2 267 65.9
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-90 336.3 242 72.7
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.8e-89 332.8 234 71.8
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 1.5e-87 327.0 251 62.2
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 3.8e-86 322.4 194 77.8
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 8.4e-86 321.2 250 62.4
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 7.4e-82 308.1 251 61.0
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 7.9e-76 288.1 206 72.3
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 9.7e-74 281.2 196 71.9
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 1.3e-73 280.8 201 65.7
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 3.4e-71 272.7 209 67.5
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.7e-68 263.1 173 79.8
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 1.8e-67 260.4 206 67.5
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.1e-66 257.7 172 72.1
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 7.0e-64 248.4 166 74.7
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-63 246.9 156 78.2
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 2.5e-61 240.0 165 73.9
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.1e-58 231.1 196 59.7
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.5e-53 214.2 130 80.0
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.5e-53 213.4 172 65.7
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 2.7e-52 209.9 172 64.5
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 9.7e-50 201.4 229 51.5
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 4.5e-47 192.6 163 66.3
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-46 189.9 156 66.0
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-46 189.5 156 65.4
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-45 187.6 173 60.7
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-45 187.2 156 65.4
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 9.4e-45 184.9 156 66.0
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-44 183.3 156 64.1
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.7e-44 182.6 157 64.3
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.0e-43 181.4 122 70.5
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-42 177.6 159 61.6
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-39 166.4 143 64.3
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.3e-38 163.7 108 76.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 8.6e-38 161.8 156 60.3
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 2.3e-35 153.7 177 54.2
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 4.0e-35 152.9 123 66.7
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.5e-34 151.0 98 75.5
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-34 150.6 160 55.0
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-34 150.6 160 55.0
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 4.4e-34 149.4 123 66.7
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-33 147.1 94 80.9
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 6.3e-33 145.6 100 72.0
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-32 144.4 95 77.9
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.0e-30 138.3 88 73.9
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 3.9e-30 136.3 228 38.6
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-26 124.8 108 63.9
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 4.4e-26 122.9 74 78.4
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-24 118.2 139 52.5
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-22 110.9 159 45.3
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 5.6e-21 105.9 70 78.6
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-18 97.4 97 56.7
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-17 92.4 89 59.6
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 8.3e-17 92.0 56 78.6
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 8.3e-17 92.0 57 73.7
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.7e-09 67.8 116 37.9
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 8.3e-09 65.5 111 38.7
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 1.0e-06 58.5 43 65.1
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 3.0e-06 57.0 35 74.3
arahy.Tifrunner.gnm1.ann1.CXRB51 Arachis hypogaea HOM05D004703 ORTHO05D015979 3.0e-06 57.0 35 74.3
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 3.9e-06 56.6 34 76.5


User provided reference genes

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