Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 9.8e-239 829.7 412 100.0
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 1.1e-205 719.9 413 89.6
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 7.1e-205 717.2 413 86.2
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 1.3e-203 713.0 413 86.0
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 1.5e-202 709.5 413 87.2
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 4.7e-201 704.5 414 85.5
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.3e-198 696.4 413 84.7
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 2.2e-198 695.7 413 86.7
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 1.1e-197 693.3 414 85.3
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 1.6e-196 689.5 413 84.3
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 7.8e-196 687.2 400 85.2
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.9e-195 684.9 412 83.5
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 8.4e-174 614.0 412 75.7
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 3.0e-171 605.5 413 73.4
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 8.7e-171 604.0 413 73.1
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 9.6e-170 600.5 411 73.5
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 1.8e-168 596.3 400 74.5
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 4.1e-168 595.1 412 73.8
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 2.0e-167 592.8 376 79.0
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 1.3e-166 590.1 398 72.9
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.1e-165 587.0 412 73.5
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 1.4e-165 586.6 400 73.5
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 2.7e-164 582.4 412 73.1
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 3.5e-164 582.0 408 70.6
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 8.7e-163 577.4 400 73.2
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 4.3e-162 575.1 354 80.5
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.7e-161 572.0 404 71.3
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 5.3e-160 568.2 397 72.5
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.6e-159 565.8 408 70.8
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.3e-158 563.5 437 66.8
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.7e-158 563.1 412 70.1
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.2e-158 562.8 413 70.5
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 2.2e-158 562.8 360 76.7
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-157 560.5 412 70.6
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.4e-157 560.1 406 70.7
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 7.2e-157 557.8 352 78.7
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 2.7e-156 555.8 398 73.4
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 7.9e-156 554.3 403 72.2
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.0e-155 553.9 412 69.7
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.0e-155 553.9 399 71.4
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 1.4e-155 553.5 420 68.3
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 8.8e-155 550.8 399 71.9
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 2.5e-154 549.3 415 69.9
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 5.7e-154 548.1 302 86.8
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 7.4e-154 547.7 400 72.5
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 8.2e-153 544.3 368 76.6
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 1.1e-152 543.9 357 77.0
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 3.1e-152 542.3 350 76.9
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.9e-152 541.2 412 70.9
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.2e-151 540.4 296 85.8
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 2.6e-151 539.3 343 77.8
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 5.9e-151 538.1 414 70.3
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 5.9e-151 538.1 365 76.4
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 7.7e-151 537.7 387 69.8
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.0e-150 537.3 344 78.5
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 1.0e-150 537.3 339 77.9
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.0e-150 537.3 353 75.9
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.3e-150 537.0 414 70.3
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.5e-150 534.6 414 70.0
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 1.4e-149 533.5 318 81.1
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.2e-149 532.3 387 71.1
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 5.5e-149 531.6 349 75.9
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 9.4e-149 530.8 395 71.4
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 1.2e-148 530.4 292 85.3
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 1.6e-148 530.0 292 84.9
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 2.1e-148 529.6 324 79.6
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 7.9e-148 527.7 427 65.1
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 1.0e-147 527.3 340 78.2
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.3e-147 526.2 398 66.6
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 3.9e-147 525.4 342 76.3
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 5.1e-147 525.0 286 86.7
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 6.7e-147 524.6 342 76.3
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 8.8e-147 524.2 340 75.3
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 8.8e-147 524.2 424 64.4
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 1.1e-146 523.9 294 84.0
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 1.1e-146 523.9 345 76.2
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 1.5e-146 523.5 280 87.5
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 1.5e-146 523.5 294 84.4
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 2.0e-146 523.1 307 81.4
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 5.7e-146 521.5 414 66.4
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 7.4e-146 521.2 286 85.7
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.3e-145 520.4 336 77.4
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 2.2e-145 519.6 370 71.9
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 8.2e-145 517.7 321 77.6
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 1.1e-144 517.3 345 76.8
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 2.4e-144 516.2 350 73.1
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 9.1e-144 514.2 288 84.4
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 2.6e-143 512.7 346 76.6
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 2.6e-143 512.7 346 76.6
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 2.6e-143 512.7 413 65.6
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 2.6e-143 512.7 339 76.7
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 1.0e-142 510.8 345 76.2
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 1.3e-142 510.4 420 65.2
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 2.2e-142 509.6 345 75.9
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 2.9e-142 509.2 344 73.5
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 5.0e-142 508.4 354 69.8
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.9e-141 506.5 495 58.8
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 3.2e-141 505.8 403 67.5
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.3e-139 499.6 375 66.7
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 2.6e-138 496.1 352 72.7
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.3e-137 493.8 360 69.2
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.4e-136 490.3 266 85.0
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 2.4e-136 489.6 414 63.8
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 2.6e-135 486.1 336 69.9
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.2e-134 483.0 325 72.6
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 3.8e-134 482.3 303 77.9
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 8.5e-134 481.1 378 63.8
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 2.3e-131 473.0 301 73.8
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 3.4e-130 469.2 266 83.5
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.7e-129 466.8 333 68.5
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 6.3e-129 464.9 409 63.3
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 1.4e-120 437.2 381 60.4
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.9e-117 426.8 344 60.2
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 5.2e-115 418.7 296 66.2
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.1e-112 411.0 219 88.6
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 4.1e-112 409.1 350 66.3
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 2.0e-111 406.8 406 55.9
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 5.9e-111 405.2 296 64.9
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 1.0e-110 404.4 274 67.5
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 3.3e-109 399.4 450 50.9
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 1.3e-105 387.5 350 57.7
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 8.1e-100 368.2 183 92.9
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 9.2e-96 354.8 408 52.5
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 8.9e-91 338.2 399 50.9
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 5.3e-75 285.8 155 83.9
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 2.2e-73 280.4 147 86.4
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 5.1e-70 269.2 274 58.4
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 2.6e-50 203.8 160 68.8
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 9.3e-48 195.3 173 60.1
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.0e-46 191.8 172 66.3
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 2.8e-44 183.7 238 44.5
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 5.3e-43 179.5 120 75.0
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 4.3e-37 159.8 94 71.3
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 2.8e-36 157.1 161 53.4
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.4e-35 154.1 135 60.7
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 3.9e-30 136.7 84 78.6
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 5.7e-29 132.9 66 87.9
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.2e-26 125.2 66 81.8
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 2.9e-25 120.6 72 83.3
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.1e-23 114.4 65 81.5
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.5e-21 108.2 71 74.6
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 2.5e-16 90.9 66 69.7
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 3.6e-15 87.0 66 62.1


User provided reference genes

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