Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 3.1e-90 335.1 169 100.0
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 6.3e-75 284.3 169 84.0
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 2.9e-72 275.4 169 82.8
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 3.8e-72 275.0 169 81.1
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 1.9e-63 246.1 169 74.6
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 4.2e-63 245.0 177 72.3
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 1.6e-62 243.0 169 72.8
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 3.6e-62 241.9 177 71.8
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 3.6e-62 241.9 169 72.8
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 1.4e-61 240.0 177 69.5
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 2.8e-59 232.3 172 70.3
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 2.6e-44 182.6 163 56.4
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 9.8e-44 180.6 171 57.3
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 3.1e-42 175.6 172 58.1
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 4.1e-42 175.3 172 56.4
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 2.0e-41 172.9 171 54.4
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 2.7e-41 172.6 172 56.4
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 2.3e-40 169.5 174 54.6
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 3.8e-40 168.7 168 54.8
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 6.6e-40 167.9 176 48.3
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 8.6e-40 167.5 168 56.0
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 8.6e-40 167.5 172 54.7
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.1e-39 167.2 167 52.7
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 1.5e-39 166.8 169 56.8
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 1.9e-39 166.4 168 55.4
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 5.5e-39 164.9 168 55.4
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 1.2e-38 163.7 172 54.1
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 1.6e-38 163.3 171 53.2
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 2.8e-38 162.5 174 50.0
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 3.6e-38 162.2 172 51.2
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 4.7e-38 161.8 162 56.2
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 6.1e-38 161.4 171 52.6
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 6.1e-38 161.4 171 50.3
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 8.0e-38 161.0 170 53.5
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 1.0e-37 160.6 171 51.5
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 1.0e-37 160.6 172 51.2
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 1.0e-37 160.6 170 52.4
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.4e-37 160.2 172 52.9
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 1.8e-37 159.8 176 54.5
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 3.0e-37 159.1 171 49.7
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 4.0e-37 158.7 174 54.0
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 4.0e-37 158.7 165 52.1
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 6.8e-37 157.9 170 53.5
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 6.8e-37 157.9 180 52.8
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 8.9e-37 157.5 172 52.3
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 8.9e-37 157.5 172 50.0
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 8.9e-37 157.5 172 50.0
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 1.5e-36 156.8 171 50.3
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.5e-36 156.8 174 53.4
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 2.0e-36 156.4 164 51.2
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 3.4e-36 155.6 180 52.2
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 4.4e-36 155.2 164 53.0
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 5.7e-36 154.8 172 49.4
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 5.7e-36 154.8 172 54.1
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 7.5e-36 154.5 164 52.4
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 1.3e-35 153.7 171 49.1
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 4.9e-35 151.8 163 53.4
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.8e-34 149.8 170 45.9
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 2.4e-34 149.4 169 52.1
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 3.1e-34 149.1 171 51.5
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 4.1e-34 148.7 165 52.1
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 5.4e-34 148.3 170 46.5
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.2e-33 147.1 170 46.5
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 1.6e-33 146.7 174 46.6
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 2.7e-33 146.0 170 47.1
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 4.5e-33 145.2 174 46.6
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 7.8e-33 144.4 174 44.8
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 1.3e-32 143.7 171 47.4
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 1.7e-32 143.3 175 46.9
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 2.9e-32 142.5 170 48.8
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 2.9e-32 142.5 171 48.0
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 5.0e-32 141.7 166 50.0
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.1e-31 140.6 175 44.6
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.1e-31 140.6 175 44.6
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 1.1e-31 140.6 171 46.2
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 1.1e-31 140.6 170 45.9
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 1.9e-31 139.8 169 45.6
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 3.3e-31 139.0 175 47.4
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 3.3e-31 139.0 181 44.2
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 4.3e-31 138.7 175 47.4
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 1.2e-30 137.1 165 47.9
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 2.1e-30 136.3 165 46.1
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 2.1e-30 136.3 137 52.6
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 8.0e-30 134.4 174 41.4
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 8.0e-30 134.4 169 46.7
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 1.0e-29 134.0 163 45.4
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 1.0e-29 134.0 170 47.1
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 1.0e-29 134.0 170 44.7
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 1.8e-29 133.3 166 47.0
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.8e-29 133.3 175 42.9
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 2.3e-29 132.9 172 45.3
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 2.3e-29 132.9 165 49.1
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 4.0e-29 132.1 164 43.9
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 6.8e-29 131.3 163 46.6
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 1.2e-28 130.6 165 47.3
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.2e-28 130.6 174 40.8
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 1.2e-28 130.6 163 44.2
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 4.4e-28 128.6 174 39.7
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 4.4e-28 128.6 108 56.5
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 9.8e-28 127.5 171 43.9
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 1.3e-27 127.1 174 50.0
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 2.9e-27 125.9 163 47.9
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 2.9e-27 125.9 163 47.9
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 3.7e-27 125.6 163 46.6
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 3.7e-27 125.6 175 44.0
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 4.9e-27 125.2 164 43.9
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 8.3e-27 124.4 165 43.6
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 8.3e-27 124.4 174 46.0
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 3.2e-26 122.5 169 45.0
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 9.2e-26 120.9 160 46.2
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 1.2e-25 120.6 163 39.3
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 2.0e-25 119.8 163 39.3
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 2.0e-25 119.8 163 39.3
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 2.0e-25 119.8 176 40.9
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 6.0e-25 118.2 163 42.3
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 1.0e-24 117.5 163 38.0
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 2.3e-24 116.3 163 39.9
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 2.3e-24 116.3 163 38.7
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 3.9e-24 115.5 171 44.4
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 8.6e-24 114.4 111 52.3
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 7.3e-23 111.3 168 40.5
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 1.2e-22 110.5 171 43.9
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 3.6e-22 109.0 165 38.8
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 3.6e-22 109.0 165 38.8
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 3.6e-22 109.0 165 38.8
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 1.4e-21 107.1 167 38.3
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 1.4e-21 107.1 167 38.3
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 1.7e-16 90.1 142 45.1
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 5.1e-16 88.6 181 37.0
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 1.1e-10 70.9 177 29.9
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.9e-10 70.1 171 31.0
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 6.6e-08 61.6 168 27.4
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 2.5e-07 59.7 86 40.7


User provided reference genes

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