Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 8.6e-170 600.1 280 100.0
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 5.4e-164 580.9 284 96.8
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 2.1e-147 525.8 280 88.9
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.0e-146 523.5 280 88.2
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 5.1e-146 521.2 278 86.7
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 3.6e-144 515.0 277 86.3
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 4.4e-142 508.1 280 85.0
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 1.7e-141 506.1 277 85.9
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 1.1e-140 503.4 280 83.6
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 2.4e-140 502.3 277 84.5
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 2.4e-140 502.3 278 83.8
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 5.4e-140 501.1 278 84.5
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 7.8e-139 497.3 278 83.8
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 1.0e-138 496.9 278 82.4
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 1.7e-138 496.1 278 82.0
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 3.0e-138 495.4 280 81.8
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 6.6e-138 494.2 278 82.4
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 1.1e-137 493.4 279 82.4
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.1e-137 493.4 277 82.7
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.5e-137 492.3 278 82.4
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 2.5e-137 492.3 278 83.1
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 4.3e-137 491.5 278 82.4
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 4.3e-137 491.5 278 82.7
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 5.6e-137 491.1 278 83.5
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 5.6e-137 491.1 278 82.0
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 5.6e-137 491.1 278 81.3
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 7.3e-137 490.7 278 81.3
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 7.3e-137 490.7 278 81.3
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 7.3e-137 490.7 278 82.4
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 1.2e-136 490.0 278 80.6
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 1.2e-136 490.0 279 82.8
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 1.2e-136 490.0 279 82.8
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 1.2e-136 490.0 278 82.0
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 1.6e-136 489.6 278 82.4
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.6e-136 489.6 278 83.1
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 1.6e-136 489.6 278 83.1
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 2.1e-136 489.2 278 82.0
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 3.6e-136 488.4 278 82.7
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 3.6e-136 488.4 277 81.9
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 4.7e-136 488.0 279 82.4
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 6.2e-136 487.6 278 81.3
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 6.2e-136 487.6 278 82.0
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 8.1e-136 487.3 278 81.3
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.1e-135 486.9 278 81.3
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 1.4e-135 486.5 278 80.2
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 2.4e-135 485.7 278 79.9
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 4.0e-135 485.0 283 80.6
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 4.0e-135 485.0 278 81.7
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 5.2e-135 484.6 278 79.9
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 8.9e-135 483.8 278 81.3
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 1.2e-134 483.4 278 80.2
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 1.2e-134 483.4 278 79.9
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 2.0e-134 482.6 278 80.2
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 2.6e-134 482.3 278 81.3
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 3.4e-134 481.9 279 81.0
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 3.4e-134 481.9 278 79.9
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 4.4e-134 481.5 278 81.3
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 5.8e-134 481.1 278 80.2
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.3e-133 479.9 281 80.1
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 1.7e-133 479.6 278 79.1
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 2.9e-133 478.8 276 81.9
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 6.4e-133 477.6 278 78.8
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 8.4e-133 477.2 278 79.5
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 8.4e-133 477.2 278 80.2
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 3.2e-132 475.3 279 80.3
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 4.2e-132 474.9 278 79.1
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 4.2e-132 474.9 278 78.4
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 4.2e-132 474.9 281 78.6
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 5.4e-132 474.6 278 79.5
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 9.2e-132 473.8 278 80.6
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 1.3e-130 469.9 280 79.6
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 1.7e-130 469.5 278 79.5
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 3.0e-130 468.8 278 78.4
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 3.9e-130 468.4 289 77.9
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 3.9e-130 468.4 278 79.1
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 5.1e-130 468.0 278 78.4
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 8.7e-130 467.2 278 79.1
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 1.1e-129 466.8 278 79.5
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 1.1e-129 466.8 278 79.1
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 1.1e-129 466.8 278 78.4
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 1.9e-129 466.1 278 79.1
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 1.9e-129 466.1 278 78.8
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 2.5e-129 465.7 278 78.4
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 2.5e-129 465.7 278 78.4
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 2.5e-129 465.7 278 78.4
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 2.5e-129 465.7 276 78.3
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 4.3e-129 464.9 278 78.4
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 5.6e-129 464.5 278 78.8
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 9.6e-129 463.8 278 78.1
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 1.6e-128 463.0 278 77.3
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 2.1e-128 462.6 277 79.1
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 1.1e-127 460.3 277 77.3
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 1.4e-127 459.9 279 79.6
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 1.8e-127 459.5 278 78.4
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 3.1e-127 458.8 279 79.2
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 4.0e-127 458.4 279 79.2
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 4.0e-127 458.4 279 79.2
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 1.5e-126 456.4 276 76.8
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 1.1e-124 450.3 280 75.4
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 2.7e-123 445.7 295 71.9
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 4.6e-123 444.9 278 75.9
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 4.6e-123 444.9 278 76.6
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 4.6e-123 444.9 278 74.5
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 1.3e-122 443.4 278 75.5
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 6.6e-122 441.0 277 73.3
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 1.9e-121 439.5 273 74.7
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 1.9e-121 439.5 319 67.4
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 8.4e-117 424.1 278 70.9
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.4e-116 423.3 278 72.3
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 3.5e-115 418.7 240 80.4
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 3.5e-115 418.7 235 81.3
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 3.3e-113 412.1 236 80.5
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 7.4e-113 411.0 277 69.0
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 8.1e-112 407.5 233 79.8
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 2.1e-104 382.9 277 65.0
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 1.8e-103 379.8 278 65.1
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 2.4e-103 379.4 277 65.3
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 3.1e-103 379.0 219 82.2
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 3.7e-96 355.5 219 75.8
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 1.7e-93 346.7 189 84.1
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 5.9e-86 321.6 288 58.0
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 1.3e-85 320.5 280 55.4
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 3.8e-85 318.9 278 59.4
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 5.7e-81 305.1 164 86.0
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 4.8e-80 302.0 164 86.6
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 1.7e-72 276.9 262 51.1
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 1.7e-64 250.4 279 45.2
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 6.5e-61 238.4 281 46.3
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 2.1e-59 233.4 284 45.4
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 5.2e-58 228.8 237 49.4
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 4.9e-56 222.2 116 88.8
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 7.0e-47 191.8 103 84.5
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 6.2e-19 99.0 84 57.1
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 1.3e-13 81.3 52 71.2
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 1.9e-12 77.4 56 62.5
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 2.1e-11 73.9 61 57.4


User provided reference genes

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