Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 6.2e-168 594.0 284 100.0
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 3.2e-164 581.6 284 96.8
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 1.8e-146 522.7 284 86.6
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 8.7e-146 520.4 284 85.9
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 1.3e-144 516.5 282 85.5
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 2.8e-144 515.4 281 85.4
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 2.1e-139 499.2 284 82.7
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 3.6e-139 498.4 282 82.6
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 6.1e-139 497.7 282 83.0
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 1.4e-138 496.5 282 82.6
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 1.8e-138 496.1 281 84.0
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 3.0e-138 495.4 282 82.3
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 5.1e-138 494.6 284 81.3
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 1.5e-137 493.0 282 80.9
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 3.3e-137 491.9 282 82.3
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 4.3e-137 491.5 281 81.5
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 1.3e-136 490.0 281 81.9
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 2.2e-136 489.2 282 80.9
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 2.2e-136 489.2 282 81.6
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 3.7e-136 488.4 282 81.6
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 6.3e-136 487.6 282 79.1
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 8.2e-136 487.3 282 79.8
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 1.1e-135 486.9 282 81.2
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.4e-135 486.5 281 80.8
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.4e-135 486.5 284 79.6
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 1.8e-135 486.1 287 80.5
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.8e-135 486.1 282 80.9
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.4e-135 485.7 282 80.5
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 3.1e-135 485.3 282 81.6
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 3.1e-135 485.3 282 81.6
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 5.3e-135 484.6 283 80.2
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 9.1e-135 483.8 282 80.5
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.5e-134 483.0 282 79.4
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 1.5e-134 483.0 282 79.4
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 1.5e-134 483.0 282 79.8
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 2.0e-134 482.6 282 79.8
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 2.0e-134 482.6 282 80.5
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 2.6e-134 482.3 283 80.6
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 2.6e-134 482.3 283 80.6
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 2.6e-134 482.3 282 78.4
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 2.6e-134 482.3 282 79.8
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 4.5e-134 481.5 282 79.1
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 5.9e-134 481.1 283 80.9
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 5.9e-134 481.1 282 79.8
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 7.7e-134 480.7 282 79.8
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 1.3e-133 479.9 280 80.7
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 1.3e-133 479.9 282 79.8
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.3e-133 479.9 282 79.8
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 1.7e-133 479.6 282 79.4
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 1.7e-133 479.6 282 78.7
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 2.9e-133 478.8 282 79.1
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 2.9e-133 478.8 282 79.1
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 3.8e-133 478.4 282 78.7
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 3.8e-133 478.4 282 79.1
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 5.0e-133 478.0 282 79.1
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 5.0e-133 478.0 282 78.4
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 2.5e-132 475.7 283 79.5
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 7.2e-132 474.2 282 79.1
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 9.4e-132 473.8 282 77.3
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 9.4e-132 473.8 282 78.0
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 1.2e-131 473.4 282 78.7
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 1.2e-131 473.4 282 79.1
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 2.1e-131 472.6 282 79.1
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 3.6e-131 471.9 285 77.9
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 4.7e-131 471.5 282 79.1
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 6.1e-131 471.1 285 77.9
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 7.9e-131 470.7 282 77.0
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 2.3e-130 469.2 282 78.0
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 5.1e-130 468.0 282 78.0
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 6.7e-130 467.6 282 77.0
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 1.1e-129 466.8 282 77.7
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 1.5e-129 466.5 293 76.5
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 2.6e-129 465.7 282 77.3
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 2.6e-129 465.7 282 78.4
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 3.3e-129 465.3 280 77.1
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 4.4e-129 464.9 282 77.0
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 9.7e-129 463.8 282 77.3
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 9.7e-129 463.8 282 77.7
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 1.3e-128 463.4 282 78.0
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 1.7e-128 463.0 284 78.2
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 2.8e-128 462.2 282 76.6
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 2.8e-128 462.2 282 76.6
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 2.8e-128 462.2 282 77.0
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 2.8e-128 462.2 282 76.2
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 6.3e-128 461.1 282 77.0
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 6.3e-128 461.1 281 77.6
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 8.2e-128 460.7 281 76.5
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 1.1e-127 460.3 282 78.0
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 1.1e-127 460.3 282 77.7
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 1.1e-127 460.3 282 76.2
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 1.4e-127 459.9 280 77.5
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 1.4e-127 459.9 282 76.2
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 4.1e-127 458.4 282 77.0
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 7.0e-127 457.6 283 77.4
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 9.1e-127 457.2 283 77.4
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 9.1e-127 457.2 283 77.4
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 1.2e-126 456.8 283 77.4
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 2.2e-125 452.6 284 75.4
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 6.5e-125 451.1 280 74.6
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.2e-123 446.8 299 70.9
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 3.0e-122 442.2 277 74.7
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 3.0e-122 442.2 282 75.5
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 3.0e-122 442.2 282 73.8
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.5e-121 439.9 282 74.1
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 2.6e-121 439.1 319 67.4
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 4.4e-121 438.3 281 72.2
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 7.5e-121 437.6 282 74.5
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 2.5e-116 422.5 282 69.1
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 2.1e-115 419.5 282 70.9
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 4.7e-115 418.3 235 81.3
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 3.4e-113 412.1 281 68.7
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 4.4e-113 411.8 244 78.7
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 4.4e-113 411.8 236 80.5
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 8.3e-112 407.5 233 79.8
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 5.7e-105 384.8 281 65.1
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 6.3e-104 381.3 281 65.1
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 1.4e-103 380.2 282 64.5
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 1.3e-101 373.6 223 80.3
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 4.1e-95 352.1 223 74.4
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 2.1e-91 339.7 193 81.9
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 3.5e-86 322.4 284 55.6
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 6.0e-86 321.6 288 58.0
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 1.8e-82 310.1 282 57.4
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 7.5e-81 304.7 168 83.9
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 2.9e-80 302.8 168 85.1
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 1.9e-71 273.5 266 50.8
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 8.4e-64 248.1 283 44.5
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 3.9e-61 239.2 285 45.6
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 1.6e-59 233.8 288 44.8
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 1.8e-58 230.3 241 49.4
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 4.9e-56 222.2 116 88.8
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 7.1e-47 191.8 103 84.5
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 6.9e-18 95.5 88 54.5
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 1.4e-13 81.3 52 71.2
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 2.0e-12 77.4 56 62.5
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 1.8e-10 70.9 65 53.8


User provided reference genes

Program Settings