Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 1.5e-267 925.6 460 100.0
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 2.2e-247 858.6 461 93.3
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 1.7e-244 849.0 459 92.8
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 1.4e-238 829.3 500 85.0
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 6.0e-237 823.9 460 87.2
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 1.8e-225 785.8 462 83.5
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 1.1e-222 776.5 464 83.8
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 7.1e-222 773.9 463 82.9
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 2.1e-221 772.3 455 83.3
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 2.1e-221 772.3 465 83.9
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 4.0e-217 758.1 460 82.0
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 4.8e-210 734.6 457 76.6
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 4.5e-208 728.0 460 80.4
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 6.0e-205 717.6 457 74.6
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 7.9e-205 717.2 458 73.4
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 1.3e-204 716.5 475 73.9
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 3.9e-204 714.9 457 74.0
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 3.9e-204 714.9 461 74.4
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.6e-202 709.5 457 73.7
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 2.1e-202 709.1 460 75.2
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 2.8e-202 708.8 462 74.2
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.1e-201 706.8 466 72.3
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 1.8e-201 706.1 464 73.5
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 2.4e-201 705.7 447 76.1
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 1.5e-200 703.0 461 74.6
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.7e-199 699.5 457 73.3
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 2.2e-199 699.1 462 72.7
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 3.2e-198 695.3 459 73.9
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 5.5e-198 694.5 477 71.3
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 9.3e-198 693.7 460 73.9
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 3.0e-196 688.7 460 73.5
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 5.1e-196 688.0 462 71.4
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 8.7e-196 687.2 461 72.9
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 1.1e-195 686.8 458 72.1
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 2.5e-195 685.6 456 72.8
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 2.5e-195 685.6 476 72.3
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 7.4e-195 684.1 463 69.8
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 1.3e-194 683.3 461 71.1
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 3.7e-194 681.8 458 72.3
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 2.4e-193 679.1 458 71.8
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 4.1e-193 678.3 458 71.2
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 5.3e-193 677.9 458 71.8
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 3.4e-192 675.2 461 71.8
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 4.5e-192 674.9 459 71.0
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 5.9e-192 674.5 458 71.4
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 1.0e-191 673.7 458 71.4
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.3e-191 673.3 462 71.0
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 1.1e-190 670.2 464 70.5
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 1.9e-190 669.5 458 70.7
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 1.9e-190 669.5 410 81.0
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 2.5e-190 669.1 461 71.6
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 1.2e-189 666.8 454 71.1
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 1.2e-189 666.8 462 70.8
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 2.1e-189 666.0 462 69.7
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 2.1e-189 666.0 462 70.6
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 2.1e-189 666.0 462 70.8
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 3.6e-189 665.2 455 71.0
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 3.6e-189 665.2 455 71.0
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 4.6e-189 664.8 462 69.5
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 4.6e-189 664.8 462 70.6
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 6.1e-189 664.5 462 70.8
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 7.9e-189 664.1 451 71.6
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 1.4e-188 663.3 462 69.3
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 8.8e-188 660.6 459 69.7
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 2.6e-187 659.1 462 69.5
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 1.3e-186 656.8 475 68.8
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 3.7e-186 655.2 462 69.9
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 8.2e-186 654.1 470 69.4
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.3e-185 651.4 479 68.1
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.0e-183 647.1 460 70.2
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 1.1e-182 643.7 465 68.4
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 3.2e-182 642.1 468 68.6
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 7.2e-182 641.0 468 68.4
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 1.7e-178 629.8 459 68.2
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 2.2e-178 629.4 462 66.9
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 1.8e-177 626.3 517 61.9
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 4.1e-177 625.2 425 70.8
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 5.3e-177 624.8 466 66.3
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 3.5e-176 622.1 451 67.0
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 3.5e-176 622.1 466 66.1
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 5.0e-175 618.2 465 67.3
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 1.5e-174 616.7 462 66.7
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 4.2e-174 615.1 460 65.9
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 4.2e-174 615.1 429 69.2
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 2.7e-173 612.5 402 73.1
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 3.0e-172 609.0 470 63.8
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 5.7e-171 604.7 400 71.8
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 1.7e-167 593.2 455 64.4
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.2e-163 580.5 463 62.4
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 6.5e-159 564.7 429 65.7
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 9.8e-155 550.8 460 59.8
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 9.8e-155 550.8 474 60.8
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 3.3e-150 535.8 463 60.0
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 2.0e-147 526.6 468 58.8
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 1.0e-143 514.2 466 57.1
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 4.0e-140 502.3 312 78.5
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 8.9e-140 501.1 474 57.4
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 7.5e-131 471.5 451 51.9
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 7.1e-129 464.9 422 60.2
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 1.2e-125 454.1 342 65.8
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 5.2e-124 448.7 285 74.4
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 1.4e-116 424.1 303 70.6
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 1.7e-111 407.1 304 64.5
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 4.6e-104 382.5 333 61.3
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 1.3e-101 374.4 253 74.7
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 6.9e-100 368.6 417 48.2
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 2.9e-98 363.2 289 69.9
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 6.4e-98 362.1 461 43.8
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.5e-97 359.0 351 55.8
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 7.4e-94 348.6 383 50.9
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 6.9e-92 342.0 458 47.2
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 1.2e-88 331.3 465 40.2
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 2.7e-88 330.1 467 40.0
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 9.0e-84 315.1 224 62.1
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 3.4e-83 313.2 455 38.0
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 5.0e-74 282.7 305 51.8
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 8.8e-71 271.9 233 58.4
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 1.9e-57 227.6 162 63.0
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 4.8e-53 213.0 164 60.4
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 4.4e-46 189.9 162 67.3
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 3.3e-41 173.7 121 66.9
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 6.1e-40 169.5 119 66.4
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 1.7e-37 161.4 109 67.0
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 6.3e-37 159.5 102 81.4
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 8.3e-37 159.1 126 58.7
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 1.0e-34 152.1 127 58.3
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 9.5e-25 119.0 411 27.0
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 7.8e-19 99.4 86 52.3
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 6.2e-16 89.7 100 45.0
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 8.1e-16 89.4 63 68.3
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 4.0e-15 87.0 56 76.8
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 3.4e-06 57.4 45 64.4


User provided reference genes

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