Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 5.7e-89 330.9 166 100.0
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 3.2e-79 298.5 166 87.3
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 1.6e-75 286.2 166 84.3
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.6e-75 286.2 166 84.3
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 2.1e-75 285.8 165 84.2
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 9.8e-73 276.9 166 81.3
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 8.3e-72 273.9 160 83.8
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.1e-71 273.5 157 84.1
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.9e-71 272.7 157 84.1
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 1.9e-71 272.7 157 84.1
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 2.1e-70 269.2 160 80.6
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 2.7e-70 268.9 160 80.6
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 3.5e-70 268.5 154 81.8
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 6.0e-70 267.7 158 82.9
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 6.0e-70 267.7 158 83.5
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 1.0e-69 266.9 158 83.5
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 1.3e-69 266.5 156 83.3
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 5.1e-69 264.6 154 80.5
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 5.1e-69 264.6 161 78.3
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 1.5e-68 263.1 158 79.1
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 1.5e-68 263.1 152 82.9
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 1.9e-68 262.7 162 77.8
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 2.5e-68 262.3 158 81.0
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 9.5e-68 260.4 159 77.4
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 1.2e-67 260.0 155 78.7
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 1.2e-67 260.0 155 78.7
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 1.2e-67 260.0 155 79.4
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 1.6e-67 259.6 156 78.8
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 1.6e-67 259.6 161 78.3
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 2.1e-67 259.2 160 77.5
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 2.8e-67 258.8 160 79.4
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.8e-67 258.8 155 78.7
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 2.8e-67 258.8 154 79.9
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 2.8e-67 258.8 160 79.4
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 2.8e-67 258.8 160 79.4
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 4.7e-67 258.1 161 76.4
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 4.7e-67 258.1 161 75.2
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 6.2e-67 257.7 162 75.9
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 6.2e-67 257.7 157 77.7
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 1.8e-66 256.1 158 77.2
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 2.3e-66 255.8 152 82.2
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.0e-66 255.0 157 77.1
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 6.8e-66 254.2 151 79.5
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 6.8e-66 254.2 162 75.3
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 1.5e-65 253.1 160 78.1
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 2.0e-65 252.7 157 75.2
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 3.4e-65 251.9 160 75.0
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 3.4e-65 251.9 151 81.5
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 3.4e-65 251.9 159 75.5
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 4.4e-65 251.5 152 80.3
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 4.4e-65 251.5 165 75.2
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 1.7e-64 249.6 154 76.6
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 1.7e-64 249.6 150 79.3
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 2.9e-64 248.8 156 76.9
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 2.9e-64 248.8 159 74.8
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 3.7e-64 248.4 163 75.5
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 4.9e-64 248.1 161 74.5
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 6.4e-64 247.7 150 78.7
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 8.3e-64 247.3 158 74.7
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 1.1e-63 246.9 160 76.9
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 1.1e-63 246.9 164 73.2
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 1.9e-63 246.1 155 75.5
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 3.2e-63 245.4 154 75.3
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 5.4e-63 244.6 159 76.1
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 9.2e-63 243.8 151 78.1
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 9.2e-63 243.8 154 77.3
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 9.2e-63 243.8 154 77.3
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 2.1e-62 242.7 156 73.1
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.7e-62 242.3 159 74.8
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 3.5e-62 241.9 154 77.3
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 3.5e-62 241.9 154 77.3
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 6.0e-62 241.1 154 75.3
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 6.0e-62 241.1 157 72.6
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 1.0e-61 240.4 154 76.0
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 1.0e-61 240.4 149 76.5
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 1.3e-61 240.0 154 76.0
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 1.7e-61 239.6 154 74.7
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 1.7e-61 239.6 154 75.3
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.7e-61 239.6 154 76.0
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 1.7e-61 239.6 154 74.0
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.3e-61 239.2 154 74.7
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 5.1e-61 238.0 157 75.2
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 5.1e-61 238.0 154 74.7
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 8.6e-61 237.3 155 72.9
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 8.6e-61 237.3 154 75.3
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.5e-60 236.5 180 67.2
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.5e-60 235.7 144 78.5
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 7.3e-60 234.2 149 75.2
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 4.7e-59 231.5 151 75.5
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 1.8e-58 229.6 190 63.7
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 6.8e-58 227.6 153 71.9
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 5.8e-57 224.6 151 70.2
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.7e-56 223.0 159 70.4
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 1.9e-55 219.5 180 63.9
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 1.6e-54 216.5 154 69.5
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 2.8e-51 205.7 170 61.8
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 2.9e-48 195.7 154 59.7
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 3.9e-45 185.3 116 78.4
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 8.7e-45 184.1 146 58.9
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 1.6e-43 179.9 91 91.2
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 2.8e-43 179.1 91 89.0
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 2.6e-41 172.6 114 73.7
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 2.6e-41 172.6 149 57.7
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 4.5e-41 171.8 157 55.4
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 5.4e-39 164.9 110 73.6
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 1.3e-37 160.2 263 40.3
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 2.3e-37 159.5 157 50.3
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.9e-36 156.4 162 56.8
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 4.8e-35 151.8 151 51.7
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 8.4e-32 141.0 154 44.2
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 1.5e-28 130.2 140 47.1
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 2.5e-28 129.4 86 73.3
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 5.1e-21 105.1 74 68.9
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 3.4e-17 92.4 69 62.3
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 2.5e-15 86.3 64 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 5.5e-15 85.1 88 51.1
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 1.2e-14 84.0 79 54.4
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 3.0e-13 79.3 55 69.1
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 6.7e-13 78.2 45 77.8
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 2.4e-10 69.7 137 33.6
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 6.9e-10 68.2 37 83.8
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 3.4e-09 65.9 37 81.1
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.2e-06 57.4 52 61.5


User provided reference genes

Program Settings