Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 2.4e-47 191.8 95 100.0
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 5.0e-13 77.8 38 97.4
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 9.5e-12 73.6 38 89.5
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 9.5e-12 73.6 38 89.5
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 9.5e-12 73.6 38 89.5
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 9.5e-12 73.6 38 89.5
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 1.2e-11 73.2 38 89.5
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 1.2e-11 73.2 38 89.5
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 2.1e-11 72.4 38 86.8
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 3.6e-11 71.6 38 86.8
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 3.6e-11 71.6 38 86.8
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 3.6e-11 71.6 38 86.8
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 8.0e-11 70.5 38 84.2
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 1.0e-10 70.1 38 78.9
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 1.4e-10 69.7 38 78.9
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 1.4e-10 69.7 38 81.6
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 1.4e-10 69.7 38 81.6
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 1.8e-10 69.3 38 76.3
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 1.8e-10 69.3 38 76.3
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 1.8e-10 69.3 38 81.6
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 1.8e-10 69.3 38 76.3
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 1.8e-10 69.3 38 86.8
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 3.0e-10 68.6 38 81.6
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 4.0e-10 68.2 38 73.7
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 4.0e-10 68.2 38 73.7
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 4.0e-10 68.2 38 73.7
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 4.0e-10 68.2 38 73.7
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 4.0e-10 68.2 38 73.7
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 4.0e-10 68.2 38 73.7
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 5.2e-10 67.8 38 73.7
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 5.2e-10 67.8 38 71.1
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 5.2e-10 67.8 38 71.1
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 5.2e-10 67.8 38 78.9
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 8.8e-10 67.0 38 76.3
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 1.2e-09 66.6 38 78.9
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.2e-09 66.6 38 78.9
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.2e-09 66.6 38 78.9
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 1.5e-09 66.2 38 76.3
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 1.5e-09 66.2 38 73.7
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 1.5e-09 66.2 38 73.7
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 1.5e-09 66.2 38 71.1
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 2.0e-09 65.9 47 63.8
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 2.6e-09 65.5 38 73.7
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 3.4e-09 65.1 38 76.3
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 3.4e-09 65.1 38 76.3
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 3.4e-09 65.1 38 76.3
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 3.4e-09 65.1 38 76.3
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 3.4e-09 65.1 41 73.2
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 3.4e-09 65.1 38 71.1
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 4.4e-09 64.7 38 76.3
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 4.4e-09 64.7 38 76.3
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 4.4e-09 64.7 38 73.7
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 5.7e-09 64.3 38 73.7
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 5.7e-09 64.3 38 76.3
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 7.5e-09 63.9 38 73.7
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 7.5e-09 63.9 41 68.3
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 9.8e-09 63.5 38 73.7
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 1.3e-08 63.2 38 68.4
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 1.7e-08 62.8 35 74.3
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 1.7e-08 62.8 38 73.7
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 2.2e-08 62.4 38 76.3
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 2.2e-08 62.4 38 68.4
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 2.2e-08 62.4 38 73.7
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 2.2e-08 62.4 38 73.7
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 2.8e-08 62.0 38 71.1
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 2.8e-08 62.0 31 87.1
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 3.7e-08 61.6 38 71.1
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 4.9e-08 61.2 37 70.3
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 4.9e-08 61.2 38 71.1
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 4.9e-08 61.2 38 73.7
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 4.9e-08 61.2 38 68.4
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 4.9e-08 61.2 38 68.4
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 6.3e-08 60.8 37 75.7
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 8.3e-08 60.5 38 71.1
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 8.3e-08 60.5 38 71.1
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 8.3e-08 60.5 38 73.7
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 1.1e-07 60.1 37 70.3
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 1.4e-07 59.7 38 65.8
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.4e-07 59.7 38 63.2
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.4e-07 59.7 38 63.2
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 1.8e-07 59.3 38 68.4
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 1.8e-07 59.3 38 63.2
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 2.4e-07 58.9 37 67.6
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 2.4e-07 58.9 38 65.8
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 2.4e-07 58.9 38 65.8
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 2.4e-07 58.9 38 68.4
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 2.4e-07 58.9 38 68.4
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 3.1e-07 58.5 41 63.4
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 4.1e-07 58.2 38 68.4
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 4.1e-07 58.2 38 60.5
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 5.4e-07 57.8 38 65.8
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 5.4e-07 57.8 41 63.4
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 7.0e-07 57.4 38 68.4
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 9.2e-07 57.0 38 60.5
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 9.2e-07 57.0 38 60.5
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 9.2e-07 57.0 35 65.7
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 9.2e-07 57.0 38 63.2
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 1.2e-06 56.6 38 63.2
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 1.2e-06 56.6 38 68.4
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 2.0e-06 55.8 38 57.9
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 2.0e-06 55.8 40 57.5
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 2.0e-06 55.8 38 65.8
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 2.7e-06 55.5 38 63.2
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 4.5e-06 54.7 39 66.7


User provided reference genes

Program Settings