Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12048_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002608 1.3e-287 992.6 595 100.0
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 3.8e-199 698.7 602 71.9
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 1.6e-194 683.3 635 67.9
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 9.9e-192 674.1 616 65.4
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 1.2e-181 640.6 654 61.3
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 2.1e-178 629.8 598 64.2
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 3.2e-158 562.8 555 61.6
arahy.Tifrunner.gnm1.ann1.CVH2M9 Arachis hypogaea HOM05D000240 ORTHO05D002608 3.7e-154 549.3 598 56.9
arahy.Tifrunner.gnm1.ann1.5T4GGV Arachis hypogaea HOM05D000240 ORTHO05D002608 3.1e-153 546.2 598 57.0
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 6.8e-132 475.3 597 51.8
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 1.6e-125 454.1 611 50.9
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 3.6e-125 453.0 597 49.1
VMungo0647G2525 Vigna mungo HOM05D000240 ORTHO05D002608 7.0e-121 438.7 401 69.1
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 2.7e-120 436.8 596 47.1
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 4.5e-120 436.0 596 47.1
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 7.7e-120 435.3 596 47.0
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 2.1e-117 427.2 599 47.1
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 8.9e-116 421.8 602 46.3
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 1.2e-115 421.4 596 46.5
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 2.2e-114 417.2 597 46.2
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 9.2e-113 411.8 570 46.8
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 2.7e-112 410.2 601 45.3
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 1.0e-111 408.3 599 45.7
Dinv09474 Davidia involucrata HOM05D000240 ORTHO05D002608 1.7e-111 407.5 533 49.5
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 2.1e-109 400.6 597 46.6
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 1.5e-107 394.4 599 44.4
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 3.4e-107 393.3 538 47.0
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 1.7e-106 391.0 601 43.4
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 1.6e-104 384.4 598 46.3
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 4.6e-104 382.9 596 44.1
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 2.3e-103 380.6 583 42.9
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 1.5e-102 377.9 622 41.6
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 3.6e-101 373.2 563 47.4
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 1.7e-98 364.4 598 41.5
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 2.9e-98 363.6 598 43.1
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 1.3e-95 354.8 595 40.7
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 8.6e-95 352.1 768 38.5
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 6.8e-92 342.4 596 42.8
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 3.4e-91 340.1 591 39.8
CSS0036916 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 4.4e-91 339.7 593 42.8
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 1.6e-88 331.3 581 38.6
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 2.3e-87 327.4 598 39.0
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 3.0e-87 327.0 598 40.1
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 1.5e-86 324.7 592 40.7
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 1.5e-86 324.7 598 39.6
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 5.6e-86 322.8 595 41.0
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 5.8e-83 312.8 590 39.7
QL07p009810 Quercus lobata HOM05D000240 ORTHO05D002608 9.9e-83 312.0 339 58.1
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 1.9e-81 307.8 595 40.2
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 9.3e-81 305.4 602 37.5
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 4.6e-80 303.1 599 38.4
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 4.6e-80 303.1 601 38.9
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 6.0e-80 302.8 598 37.8
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 4.3e-78 296.6 590 38.6
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 4.3e-78 296.6 593 38.1
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 9.6e-78 295.4 602 37.2
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 6.9e-76 289.3 596 37.8
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 2.0e-75 287.7 586 37.9
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 3.4e-75 287.0 602 36.4
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 4.5e-75 286.6 602 36.4
Cc00_g02410 Coffea canephora HOM05D000240 ORTHO05D002608 6.4e-74 282.7 393 46.6
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 1.1e-73 282.0 607 34.9
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 5.4e-73 279.6 597 37.9
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 9.3e-73 278.9 594 35.9
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 6.0e-72 276.2 605 37.7
Cpa.g.sc1212.3 Carica papaya HOM05D000240 ORTHO05D002608 1.0e-71 275.4 338 52.1
Ciclev10004865m.g Citrus clementina HOM05D000240 ORTHO05D002608 2.3e-71 274.2 418 43.8
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 1.1e-70 271.9 599 37.9
Psat7g032320 Pisum sativum HOM05D000240 ORTHO05D002608 1.9e-70 271.2 231 70.1
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 9.6e-70 268.9 575 39.1
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 4.0e-68 263.5 588 37.4
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 2.0e-67 261.2 648 35.2
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 3.4e-67 260.4 593 35.9
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 4.6e-64 250.0 594 34.2
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 1.0e-63 248.8 468 41.9
Psat6g089400 Pisum sativum HOM05D000240 ORTHO05D015017 1.0e-63 248.8 218 69.7
Psat6g089440 Pisum sativum HOM05D000240 ORTHO05D002608 1.8e-63 248.1 280 55.4
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 2.8e-61 240.7 605 32.9
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 6.9e-60 236.1 594 35.9
Eucgr.A02253 Eucalyptus grandis HOM05D000240 ORTHO05D018836 4.5e-59 233.4 261 55.2
Lj2A398T49 Lonicera japonica HOM05D000240 ORTHO05D002608 4.5e-59 233.4 417 41.0
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 5.8e-59 233.0 418 39.5
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 1.2e-56 225.3 591 34.5
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 4.6e-56 223.4 562 32.2
vmacro05229 Vaccinium macrocarpon HOM05D000240 ORTHO05D002608 2.3e-55 221.1 255 52.2
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 9.6e-54 215.7 608 32.7
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 3.8e-50 203.8 568 35.7
QL07p009794 Quercus lobata HOM05D000240 ORTHO05D002608 4.3e-46 190.3 260 46.5
VMungo0647G0305 Vigna mungo HOM05D000240 ORTHO05D002608 1.1e-41 175.6 176 58.5
HPP92_010739 Vanilla planifolia HOM05D000240 ORTHO05D002608 1.3e-37 162.2 574 30.7
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.3e-34 152.1 550 28.2
Oeu059363.3 Olea europaea HOM05D000240 ORTHO05D002608 1.3e-34 152.1 351 35.6
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 8.5e-34 149.4 550 28.5
CDE05G2293 Ceratophyllum demersum HOM05D000240 ORTHO05D002608 1.9e-33 148.3 554 26.5
Sabra13G0113100 Salix brachista HOM05D000009 ORTHO05D000008 2.7e-32 144.4 295 39.3
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 3.6e-32 144.1 550 28.5
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 1.0e-31 142.5 511 30.1
MD12G1093000 Malus domestica HOM05D000240 ORTHO05D002608 6.7e-31 139.8 286 36.7
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 6.7e-31 139.8 556 27.0
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 2.6e-30 137.9 544 27.2
Os09g0421200 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D002608 5.3e-28 130.2 320 36.6
CSS0038394 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 1.7e-26 125.2 209 42.6
CSS0017071 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D002608 2.0e-22 111.7 210 41.0
FAN10G3808 Fragaria x ananassa HOM05D000240 ORTHO05D015017 2.0e-22 111.7 196 38.3
Cc00_g02390 Coffea canephora HOM05D000240 ORTHO05D002608 6.3e-21 106.7 177 44.1
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 1.6e-19 102.1 328 31.4
Lj2A398T48 Lonicera japonica HOM05D000240 ORTHO05D002608 1.6e-19 102.1 179 41.3
CDE02G4365 Ceratophyllum demersum HOM05D000240 ORTHO05D018836 6.8e-15 86.7 140 37.1
BcaC07g42757 Brassica carinata HOM05D000240 ORTHO05D002608 4.4e-14 84.0 117 47.0
Mapoly0060s0012 Marchantia polymorpha HOM05D000240 ORTHO05D002608 6.3e-13 80.1 411 24.1
Ciclev10006521m.g Citrus clementina HOM05D000240 ORTHO05D002608 2.9e-10 71.2 51 58.8
Gohir.D04G091200 Gossypium hirsutum HOM05D000240 ORTHO05D018836 5.5e-09 67.0 72 56.9
Gorai.009G392300 Gossypium raimondii HOM05D000240 ORTHO05D018836 5.5e-09 67.0 72 56.9
Cpa.g.sc5.185 Carica papaya HOM05D000240 ORTHO05D002608 9.5e-09 66.2 58 55.2
CSS0022645 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D018836 1.2e-08 65.9 72 55.6
MD12G1093100 Malus domestica HOM05D000240 ORTHO05D002608 3.6e-08 64.3 62 48.4
MBI14_g46138_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D016689 2.3e-07 61.6 177 31.6
Gohir.D10G111332 Gossypium hirsutum HOM05D000240 ORTHO05D018836 4.0e-07 60.8 58 62.1
Gorai.002G187100 Gossypium raimondii HOM05D000240 ORTHO05D018836 6.8e-07 60.1 58 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3512 Anthoceros agrestis HOM05D000240 ORTHO05D002608 4.4e-06 57.4 215 30.7


User provided reference genes

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