Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12039_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 3.4e-29 131.0 64 100.0
Ca_12045_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 1.0e-25 119.4 58 100.0
TPR.G30301 Trifolium pratense HOM05D003641 ORTHO05D004915 1.0e-25 119.4 58 100.0
Lj5g0013930 Lotus japonicus HOM05D003641 ORTHO05D004915 6.6e-25 116.7 58 96.6
Medtr0136s0060 Medicago truncatula HOM05D003641 ORTHO05D004915 6.6e-25 116.7 58 96.6
Phvul.001G143800 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 1.1e-24 115.9 58 94.8
Glyma.19G149300 Glycine max HOM05D003641 ORTHO05D004915 2.5e-24 114.8 58 93.1
CAN.G960.10 Capsicum annuum HOM05D003641 ORTHO05D004915 3.3e-24 114.4 62 88.7
Glyma.03G146100 Glycine max HOM05D003641 ORTHO05D004915 5.6e-24 113.6 58 93.1
Ca_08533_v3 Cicer arietinum L. HOM05D003641 ORTHO05D004915 7.3e-24 113.2 59 89.8
Phvul.007G261100 Phaseolus vulgaris HOM05D003641 ORTHO05D004915 7.3e-24 113.2 58 91.4
Glyma.02G171100 Glycine max HOM05D003641 ORTHO05D004915 1.6e-23 112.1 58 91.4
SGA_v2.0_scaffold69G23056 Striga asiatica HOM05D003641 ORTHO05D004915 1.6e-23 112.1 58 89.7
Lalb_Chr18g0047991 Lupinus albus HOM05D003641 ORTHO05D004915 2.1e-23 111.7 58 91.4
VMungo1383G0826 Vigna mungo HOM05D003641 ORTHO05D004915 2.1e-23 111.7 58 89.7
Lj1g0002782 Lotus japonicus HOM05D003641 ORTHO05D004915 2.8e-23 111.3 58 89.7
Medtr7g093500 Medicago truncatula HOM05D003641 ORTHO05D004915 2.8e-23 111.3 59 88.1
MSTRG.19915 Avicennia marina HOM05D003641 ORTHO05D004915 3.6e-23 110.9 58 87.9
Ciclev10012043m.g Citrus clementina HOM05D003641 ORTHO05D004915 3.6e-23 110.9 58 89.7
Glyma.09G109200 Glycine max HOM05D003641 ORTHO05D004915 3.6e-23 110.9 58 89.7
VMungo0720G0815 Vigna mungo HOM05D003641 ORTHO05D004915 4.7e-23 110.5 58 89.7
COL.COLO4_29349 Corchorus olitorius HOM05D003641 ORTHO05D004915 6.1e-23 110.2 58 86.2
SalBow6G5303 Salvia bowleyana HOM05D003641 ORTHO05D004915 6.1e-23 110.2 58 87.9
BcaB06g25550 Brassica carinata HOM05D003641 ORTHO05D004915 1.0e-22 109.4 58 87.9
BcaC05g29294 Brassica carinata HOM05D003641 ORTHO05D004915 1.0e-22 109.4 58 87.9
A05p37290 Brassica napus HOM05D003641 ORTHO05D004915 1.0e-22 109.4 58 87.9
C05p55760 Brassica napus HOM05D003641 ORTHO05D004915 1.0e-22 109.4 58 87.9
BraA05t22525Z Brassica rapa HOM05D003641 ORTHO05D004915 1.0e-22 109.4 58 87.9
Solyc10g078930.2 Solanum lycopersicum HOM05D003641 ORTHO05D004915 1.0e-22 109.4 58 86.2
Sopen10g029550 Solanum pennellii HOM05D003641 ORTHO05D004915 1.0e-22 109.4 58 86.2
SGA_v2.0_scaffold105G30499 Striga asiatica HOM05D003641 ORTHO05D004915 1.4e-22 109.0 58 86.2
Thecc.05G174300 Theobroma cacao HOM05D003641 ORTHO05D004915 1.4e-22 109.0 58 84.5
arahy.Tifrunner.gnm1.ann1.86C462 Arachis hypogaea HOM05D003641 ORTHO05D004915 1.8e-22 108.6 58 87.9
arahy.Tifrunner.gnm1.ann1.G8NWJQ Arachis hypogaea HOM05D003641 ORTHO05D004915 1.8e-22 108.6 58 87.9
CARHR086620 Cardamine hirsuta HOM05D003641 ORTHO05D004915 1.8e-22 108.6 58 86.2
Migut.J01850 Erythranthe guttata HOM05D003641 ORTHO05D004915 1.8e-22 108.6 58 87.9
Sp3g10280 Schrenkiella parvula HOM05D003641 ORTHO05D004915 1.8e-22 108.6 58 86.2
AL3G23660 Arabidopsis lyrata HOM05D003641 ORTHO05D004915 2.3e-22 108.2 58 86.2
AT3G12050 Arabidopsis thaliana HOM05D003641 ORTHO05D004915 2.3e-22 108.2 58 86.2
Psat3g067000 Pisum sativum HOM05D003641 ORTHO05D004915 2.3e-22 108.2 59 86.4
Nitab4.5_0007274g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 3.0e-22 107.8 58 86.2
Oeu006209.1 Olea europaea HOM05D003641 ORTHO05D004915 3.0e-22 107.8 59 84.7
Carub.0003s1139 Capsella rubella HOM05D003641 ORTHO05D004915 4.0e-22 107.5 58 87.9
MD14G1054700 Malus domestica HOM05D003641 ORTHO05D004915 4.0e-22 107.5 58 84.5
Nitab4.5_0002343g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 4.0e-22 107.5 58 87.9
Peaxi162Scf00258g00921 Petunia axillaris HOM05D003641 ORTHO05D004915 4.0e-22 107.5 58 84.5
PGSC0003DMG400011447 Solanum tuberosum HOM05D003641 ORTHO05D004915 4.0e-22 107.5 62 82.3
Thhalv10021006m.g Eutrema salsugineum HOM05D003641 ORTHO05D004915 5.2e-22 107.1 58 84.5
Gohir.D04G089400 Gossypium hirsutum HOM05D003641 ORTHO05D004915 5.2e-22 107.1 58 84.5
Nitab4.5_0001137g0010 Nicotiana tabacum HOM05D003641 ORTHO05D004915 5.2e-22 107.1 58 86.2
Prupe.7G080100 Prunus persica HOM05D003641 ORTHO05D004915 5.2e-22 107.1 58 84.5
MD12G1055300 Malus domestica HOM05D003641 ORTHO05D004915 6.8e-22 106.7 58 84.5
unitig_899.g15167 Utricularia gibba HOM05D003641 ORTHO05D004915 6.8e-22 106.7 59 81.4
AUR62011998 Chenopodium quinoa HOM05D003641 ORTHO05D004915 8.9e-22 106.3 58 84.5
AUR62015343 Chenopodium quinoa HOM05D003641 ORTHO05D004915 8.9e-22 106.3 58 84.5
Duzib093G1627 Durio zibethinus HOM05D003641 ORTHO05D004915 8.9e-22 106.3 58 82.8
Oeu063867.1 Olea europaea HOM05D003641 ORTHO05D004915 8.9e-22 106.3 58 84.5
RcHm_v2.0_Chr3g0479291 Rosa chinensis HOM05D003641 ORTHO05D004915 8.9e-22 106.3 59 83.1
Aa31sc80G90 Aethionema arabicum HOM05D003641 ORTHO05D004915 1.2e-21 105.9 58 82.8
Gohir.D04G089500 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.2e-21 105.9 58 82.8
Gorai.012G099600 Gossypium raimondii HOM05D003641 ORTHO05D004915 1.2e-21 105.9 58 82.8
PGR004G2452 Punica granatum HOM05D003641 ORTHO05D004915 1.2e-21 105.9 58 84.5
THA.LOC104826776 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 1.2e-21 105.9 58 82.8
ATR0598G178 Amborella trichopoda HOM05D003641 ORTHO05D004915 1.5e-21 105.5 58 81.0
Gohir.A04G051900 Gossypium hirsutum HOM05D003641 ORTHO05D004915 1.5e-21 105.5 58 81.0
Rhsim03G0004900 Rhododendron simsii HOM05D003641 ORTHO05D004915 1.5e-21 105.5 58 86.2
vmacro07894 Vaccinium macrocarpon HOM05D003641 ORTHO05D004915 1.5e-21 105.5 58 86.2
Actinidia32404 Actinidia chinensis HOM05D003641 ORTHO05D004915 2.6e-21 104.8 58 82.8
CsaV3_3G038670 Cucumis sativus L. HOM05D003641 ORTHO05D004915 2.6e-21 104.8 58 81.0
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 2.6e-21 104.8 62 80.6
Lju124A24T32 Lonicera japonica HOM05D003641 ORTHO05D004915 2.6e-21 104.8 58 82.8
HanXRQChr01g0010591 Helianthus annuus HOM05D003641 ORTHO05D004915 3.4e-21 104.4 58 84.5
PSO135G0566 Papaver somniferum HOM05D003641 ORTHO05D004915 3.4e-21 104.4 58 82.8
THA.LOC104809934 Tarenaya hassleriana HOM05D003641 ORTHO05D004915 3.4e-21 104.4 58 81.0
Zm00001eb037640 Zea mays HOM05D003641 ORTHO05D004915 3.4e-21 104.4 58 81.0
Actinidia14376 Actinidia chinensis HOM05D003641 ORTHO05D004915 4.4e-21 104.0 58 82.8
Actinidia22049 Actinidia chinensis HOM05D003641 ORTHO05D004915 4.4e-21 104.0 58 82.8
CSS0018208 Camellia sinensis var. sinensis HOM05D003641 ORTHO05D004915 4.4e-21 104.0 58 82.8
Cpa.g.sc85.60 Carica papaya HOM05D003641 ORTHO05D004915 4.4e-21 104.0 58 82.8
Cc06_g15710 Coffea canephora HOM05D003641 ORTHO05D004915 4.4e-21 104.0 58 79.3
FvH4_6g21990 Fragaria vesca HOM05D003641 ORTHO05D004915 4.4e-21 104.0 62 75.8
FAN02G1826 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.4e-21 104.0 62 75.8
FAN05G2657 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.4e-21 104.0 62 75.8
FAN09G3507 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.4e-21 104.0 62 75.8
FAN14G0097 Fragaria x ananassa HOM05D003641 ORTHO05D004915 4.4e-21 104.0 62 75.8
Nn7g35971 Nelumbo nucifera HOM05D003641 ORTHO05D004915 4.4e-21 104.0 58 81.0
Os08g0464000 Oryza sativa ssp. japonica HOM05D003641 ORTHO05D004915 4.4e-21 104.0 58 82.8
PSO724G0609 Papaver somniferum HOM05D003641 ORTHO05D004915 4.4e-21 104.0 58 82.8
Eucgr.A02465 Eucalyptus grandis HOM05D003641 ORTHO05D004915 5.7e-21 103.6 58 82.8
ClCG10G017650 Citrullus lanatus HOM05D003641 ORTHO05D004915 7.5e-21 103.2 58 79.3
MELO3C009611.2 Cucumis melo HOM05D003641 ORTHO05D004915 7.5e-21 103.2 58 79.3
Duzib128G0491 Durio zibethinus HOM05D003641 ORTHO05D004915 7.5e-21 103.2 58 79.3
Mapoly0109s0023 Marchantia polymorpha HOM05D003641 ORTHO05D004915 7.5e-21 103.2 58 81.0
Sc13g0002360 Simmondsia chinensis HOM05D003641 ORTHO05D004915 7.5e-21 103.2 58 81.0
Atru.chr8.1148 Acer truncatum HOM05D003641 ORTHO05D004915 9.8e-21 102.8 58 79.3
CANSAT64G0207 Cannabis sativa HOM05D003641 ORTHO05D004915 9.8e-21 102.8 58 81.0
QL07p024293 Quercus lobata HOM05D003641 ORTHO05D004915 9.8e-21 102.8 57 80.7
Sabra16G0062900 Salix brachista HOM05D003641 ORTHO05D004915 9.8e-21 102.8 59 78.0
Nn7g35972 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.3e-20 102.4 58 77.6
EL10Ac3g06892 Beta vulgaris HOM05D003641 ORTHO05D004915 2.2e-20 101.7 58 79.3
GSVIVG01033476001 Vitis vinifera HOM05D003641 ORTHO05D004915 2.2e-20 101.7 58 81.0
CiPaw.10G025600 Carya illinoinensis HOM05D003641 ORTHO05D004915 2.9e-20 101.3 58 77.6
CDE11G0833 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 2.9e-20 101.3 59 79.7
Haze_20012 Corylus avellana HOM05D003641 ORTHO05D004915 2.9e-20 101.3 58 79.3
Dinv18648 Davidia involucrata HOM05D003641 ORTHO05D004915 2.9e-20 101.3 58 79.3
Dinv24057 Davidia involucrata HOM05D003641 ORTHO05D004915 2.9e-20 101.3 58 79.3
Dinv26263 Davidia involucrata HOM05D003641 ORTHO05D004915 2.9e-20 101.3 58 79.3
Sed0007356 Sechium edule HOM05D003641 ORTHO05D004915 2.9e-20 101.3 58 77.6
TWI53G2154 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 2.9e-20 101.3 58 77.6
Hund24813 Selenicereus undatus HOM05D003641 ORTHO05D004915 3.7e-20 100.9 58 77.6
CiPaw.09G029000 Carya illinoinensis HOM05D003641 ORTHO05D004915 4.9e-20 100.5 58 77.6
Sabra06G0149100 Salix brachista HOM05D003641 ORTHO05D004915 4.9e-20 100.5 59 74.6
TAR633G0428 Trochodendron aralioides HOM05D003641 ORTHO05D004915 4.9e-20 100.5 59 76.3
Potri.006G194400 Populus trichocarpa HOM05D003641 ORTHO05D004915 6.4e-20 100.1 59 72.9
Manes.09G037400 Manihot esculenta HOM05D003641 ORTHO05D004915 8.3e-20 99.8 58 74.1
Pp3c15_21400 Physcomitrium patens HOM05D003641 ORTHO05D004915 8.3e-20 99.8 58 79.3
Potri.016G060100 Populus trichocarpa HOM05D003641 ORTHO05D004915 8.3e-20 99.8 59 76.3
TAR636G0728 Trochodendron aralioides HOM05D003641 ORTHO05D004915 8.3e-20 99.8 58 75.9
Cfa020150 Carpinus fangiana HOM05D003641 ORTHO05D004915 1.1e-19 99.4 58 77.6
CDE05G2508 Ceratophyllum demersum HOM05D003641 ORTHO05D004915 1.1e-19 99.4 58 79.3
DCAR_017036 Daucus carota HOM05D003641 ORTHO05D004915 1.4e-19 99.0 62 74.2
Manes.08G042800 Manihot esculenta HOM05D003641 ORTHO05D004915 1.4e-19 99.0 58 77.6
Nitab4.5_0000105g0210 Nicotiana tabacum HOM05D003641 ORTHO05D004915 1.4e-19 99.0 51 92.2
Zm00001eb177410 Zea mays HOM05D003641 ORTHO05D004915 1.4e-19 99.0 58 77.6
Dinv18651 Davidia involucrata HOM05D003641 ORTHO05D004915 1.8e-19 98.6 58 77.6
arahy.Tifrunner.gnm1.ann1.VQQW03 Arachis hypogaea HOM05D003641 ORTHO05D004915 2.4e-19 98.2 53 86.8
Lj2A365T90 Lonicera japonica HOM05D003641 ORTHO05D004915 3.2e-19 97.8 58 74.1
TWI74G1529 Tripterygium wilfordii HOM05D003641 ORTHO05D004915 3.2e-19 97.8 58 75.9
HPP92_009321 Vanilla planifolia HOM05D003641 ORTHO05D004915 4.1e-19 97.4 58 75.9
MBI19_g17419_MAGBIO Magnolia biondii HOM05D003641 ORTHO05D004915 9.2e-19 96.3 58 72.4
Pp3c9_15400 Physcomitrium patens HOM05D003641 ORTHO05D004915 1.2e-18 95.9 58 75.9
Aqoxy1G00140 Aquilegia oxysepala HOM05D003641 ORTHO05D004915 2.0e-18 95.1 58 75.9
HPP92_005766 Vanilla planifolia HOM05D003641 ORTHO05D004915 2.7e-18 94.7 58 74.1
AagrBONN_evm.TU.Sc2ySwM_344.3694 Anthoceros agrestis HOM05D003641 ORTHO05D004915 7.8e-18 93.2 58 72.4
Hma1.2p1_0676F.1_g201930 Hydrangea macrophylla HOM05D003641 ORTHO05D004915 7.8e-18 93.2 58 74.1
Hund19209 Selenicereus undatus HOM05D003641 ORTHO05D004915 7.8e-18 93.2 58 70.7
BcaC09g48210 Brassica carinata HOM05D003641 ORTHO05D004915 1.0e-17 92.8 76 63.2
Nn8g39306 Nelumbo nucifera HOM05D003641 ORTHO05D004915 1.0e-17 92.8 58 72.4
CBR_g18730 Chara braunii HOM05D003641 ORTHO05D004915 1.3e-17 92.4 55 76.4
Lsat_1_v5_gn_5_164500 Lactuca sativa HOM05D003641 ORTHO05D004915 1.7e-17 92.0 52 80.8
BolC5t34243H Brassica oleracea HOM05D003641 ORTHO05D004915 1.9e-16 88.6 101 50.5
SMO203G0054 Selaginella moellendorffii HOM05D003641 ORTHO05D004915 1.9e-16 88.6 58 69.0
unitig_746.g26803 Utricularia gibba HOM05D003641 ORTHO05D004915 2.2e-12 75.1 47 72.3
Gohir.A04G052000 Gossypium hirsutum HOM05D003641 ORTHO05D004915 4.9e-12 73.9 39 87.2
arahy.Tifrunner.gnm1.ann1.EPN7T6 Arachis hypogaea HOM05D003641 ORTHO05D004915 4.1e-11 70.9 40 80.0
PRCOL_00005901 Prasinoderma coloniale HOM05D003641 ORTHO05D004915 7.0e-11 70.1 59 55.9
Ah.04g152830 Amaranthus hybridus HOM05D003641 ORTHO05D004915 2.0e-10 68.6 39 79.5
MCO07G236 Micromonas commoda HOM05D003641 ORTHO05D004915 1.7e-09 65.5 57 52.6
CsaV3_5G015400 Cucumis sativus L. HOM05D003641 ORTHO05D004915 3.9e-09 64.3 50 56.0
Cre03.g199300 Chlamydomonas reinhardtii HOM05D003641 ORTHO05D004915 5.6e-08 60.5 57 49.1


User provided reference genes

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