Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 6.6e-287 989.9 484 100.0
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 3.0e-279 964.5 484 96.5
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 6.2e-277 956.8 484 95.9
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.1e-276 956.1 484 95.5
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 1.4e-273 945.7 484 93.8
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 9.3e-273 943.0 484 94.6
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 4.6e-272 940.6 484 94.4
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 4.6e-272 940.6 484 93.6
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 1.3e-271 939.1 482 94.4
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 2.5e-270 934.9 484 93.0
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 3.3e-270 934.5 484 93.4
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 3.3e-270 934.5 484 93.4
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.3e-269 932.6 484 92.4
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 3.7e-269 931.0 493 92.7
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.4e-268 929.1 484 92.6
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 2.4e-268 928.3 484 92.1
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.1e-268 927.9 484 90.9
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.1e-268 927.9 484 92.4
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 6.9e-268 926.8 484 92.4
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 9.0e-268 926.4 484 92.6
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.5e-267 925.6 484 92.1
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.5e-267 925.6 484 91.9
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 4.5e-267 924.1 484 93.0
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 1.3e-266 922.5 484 91.3
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 3.8e-266 921.0 484 91.1
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 3.8e-266 921.0 484 91.5
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 4.9e-266 920.6 482 92.1
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 6.5e-266 920.2 485 91.8
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 6.5e-266 920.2 483 91.9
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 6.5e-266 920.2 484 90.7
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 8.4e-266 919.8 482 91.1
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 8.4e-266 919.8 484 91.3
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.1e-265 919.5 484 90.7
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.1e-265 919.5 484 92.1
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.1e-265 919.5 481 91.9
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.1e-265 919.5 484 91.1
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.4e-265 919.1 484 90.7
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.9e-265 918.7 482 91.5
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 2.5e-265 918.3 484 91.1
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 3.2e-265 917.9 484 90.9
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.5e-265 917.1 484 90.5
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 5.5e-265 917.1 483 91.3
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 7.1e-265 916.8 484 91.7
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 7.1e-265 916.8 483 91.5
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 7.1e-265 916.8 477 92.0
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 1.6e-264 915.6 484 90.9
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 1.6e-264 915.6 482 91.9
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 2.1e-264 915.2 484 91.1
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 2.1e-264 915.2 484 91.1
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 3.5e-264 914.4 482 91.3
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 3.5e-264 914.4 484 90.9
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 3.5e-264 914.4 489 91.0
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.6e-264 914.1 481 92.1
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 4.6e-264 914.1 482 91.3
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 6.0e-264 913.7 484 91.3
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 6.0e-264 913.7 482 91.3
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 6.0e-264 913.7 484 91.1
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 7.9e-264 913.3 482 91.1
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.0e-263 912.9 484 91.1
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 1.3e-263 912.5 484 91.1
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 1.3e-263 912.5 484 90.9
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 1.3e-263 912.5 482 90.9
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 1.3e-263 912.5 482 90.9
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 1.8e-263 912.1 484 91.1
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.8e-263 912.1 484 91.1
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 2.3e-263 911.8 484 90.9
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 3.0e-263 911.4 484 91.1
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 3.0e-263 911.4 484 91.1
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 3.0e-263 911.4 482 91.1
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 3.0e-263 911.4 485 91.1
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 3.9e-263 911.0 482 90.9
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 8.7e-263 909.8 484 90.9
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.1e-262 909.4 482 91.3
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 1.1e-262 909.4 478 91.2
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.5e-262 909.1 484 90.9
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 3.3e-262 907.9 484 90.9
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 3.3e-262 907.9 486 90.1
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.3e-262 907.9 482 90.7
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 3.3e-262 907.9 484 90.5
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 4.3e-262 907.5 483 89.9
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 9.6e-262 906.4 482 90.9
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.1e-261 905.2 484 90.5
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 2.1e-261 905.2 484 90.7
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.1e-261 905.2 473 92.2
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 3.7e-261 904.4 484 90.7
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 4.8e-261 904.0 486 90.5
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 6.3e-261 903.7 485 90.5
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 8.2e-261 903.3 482 89.6
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 8.2e-261 903.3 482 89.8
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 1.1e-260 902.9 482 90.5
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 1.1e-260 902.9 482 89.8
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 4.1e-260 901.0 484 90.1
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 6.9e-260 900.2 477 90.1
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 9.0e-260 899.8 483 89.9
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 4.5e-259 897.5 483 89.6
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 5.9e-259 897.1 476 91.6
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.7e-258 895.6 482 89.0
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 2.9e-258 894.8 482 90.2
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.9e-257 892.1 482 88.8
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 3.2e-257 891.3 482 88.6
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 7.2e-257 890.2 482 88.4
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 7.2e-257 890.2 479 90.0
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 9.3e-257 889.8 453 93.6
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 5.1e-255 884.0 458 93.0
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 2.5e-254 881.7 460 92.2
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 3.3e-254 881.3 460 92.2
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.1e-252 876.3 457 92.6
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 2.1e-248 862.1 481 87.1
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 3.6e-248 861.3 451 90.7
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.0e-246 855.5 475 87.2
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 6.3e-245 850.5 478 86.6
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 1.4e-244 849.4 437 89.5
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 4.1e-244 847.8 438 90.0
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 5.3e-244 847.4 439 90.9
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 3.2e-241 838.2 434 89.6
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 9.4e-241 836.6 457 85.8
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 3.9e-239 831.2 406 96.3
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 3.7e-237 824.7 408 94.6
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.4e-236 822.8 406 94.6
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 5.3e-236 820.8 405 94.6
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 2.6e-235 818.5 406 94.3
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 7.5e-230 800.4 433 85.9
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 2.2e-226 788.9 482 80.7
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 6.8e-223 777.3 383 95.3
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 9.1e-220 766.9 420 82.9
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 3.5e-219 765.0 427 82.0
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 1.0e-218 763.5 436 81.2
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 9.8e-214 746.9 392 90.8
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.3e-210 736.5 390 92.1
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 5.6e-209 731.1 481 76.7
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.0e-191 671.8 346 92.2
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 3.4e-190 668.7 365 87.7
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 8.1e-184 647.5 395 73.9
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.2e-182 643.7 482 70.1
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 8.7e-178 627.5 314 93.3
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.3e-173 613.6 484 67.8
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.7e-173 613.2 482 67.8
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.0e-170 604.0 482 67.2
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 1.1e-167 594.0 331 87.9
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.4e-148 530.4 279 90.0
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.9e-141 506.1 351 72.6
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 6.5e-125 451.8 276 74.3
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.7e-115 419.9 203 97.0
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.2e-97 361.3 180 91.1
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.2e-96 357.1 222 78.8
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 3.3e-92 343.2 171 94.2
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 8.9e-90 335.1 171 91.8
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.3e-85 321.2 482 42.7
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 1.8e-74 284.3 146 89.7
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 4.6e-70 269.6 146 87.7
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 6.6e-69 265.8 161 85.1
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 8.4e-64 248.8 126 93.7
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 5.4e-63 246.1 127 86.6
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.5e-60 238.0 144 84.0
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 5.4e-55 219.5 284 42.3
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 1.3e-51 208.4 100 95.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-50 205.3 102 94.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.0e-50 203.4 124 83.1
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 6.0e-38 162.9 105 74.3
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 3.7e-35 153.7 102 75.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 1.1e-34 152.1 77 93.5
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 1.1e-34 152.1 77 93.5
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 6.7e-29 132.9 196 38.8
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.1e-28 132.1 69 92.8
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.7e-28 129.8 71 85.9
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.6e-27 128.3 70 84.3
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.4e-26 124.4 65 89.2
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.4e-26 124.4 65 89.2
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.5e-25 120.2 66 84.8
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.0e-24 119.0 66 83.3
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.4e-21 108.6 83 65.1
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.8e-21 108.2 67 73.1
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 5.1e-21 106.7 67 68.7
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 7.2e-15 86.3 168 34.5
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 1.1e-12 79.0 71 54.9
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 5.7e-12 76.6 72 54.2
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.3e-11 75.5 72 54.2
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 4.8e-11 73.6 59 78.0
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 4.5e-09 67.0 61 55.7
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 6.5e-08 63.2 59 61.0
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 8.0e-06 56.2 40 65.0


User provided reference genes

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