Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.4e-277 959.1 525 100.0
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 7.5e-244 847.0 527 90.3
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 6.0e-201 704.5 529 77.5
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.4e-186 656.8 529 72.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 6.1e-185 651.4 528 73.5
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 8.8e-184 647.5 528 69.5
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.5e-180 636.7 534 69.1
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.9e-179 632.5 533 70.4
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 2.1e-177 626.3 527 70.6
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 4.7e-177 625.2 528 69.3
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 4.5e-172 608.6 527 69.4
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 6.3e-150 535.0 563 60.4
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 1.7e-139 500.4 537 57.2
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.8e-136 490.3 562 54.6
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.3e-130 469.5 555 54.6
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 8.9e-128 461.5 542 59.4
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 9.8e-127 458.0 565 56.5
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.7e-126 457.2 575 53.6
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 6.4e-126 455.3 550 56.4
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.1e-125 454.5 562 55.2
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 2.4e-125 453.4 556 55.4
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 4.1e-125 452.6 562 52.0
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 9.2e-125 451.4 571 50.4
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.2e-124 451.1 544 55.1
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.2e-124 451.1 552 51.4
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 3.5e-124 449.5 563 52.2
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 4.6e-124 449.1 537 57.4
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 6.0e-124 448.7 565 52.6
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.7e-123 447.2 560 50.0
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 5.1e-123 445.7 560 49.8
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 8.6e-123 444.9 562 50.4
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.9e-122 443.7 560 50.0
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.9e-122 443.7 561 54.7
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.5e-122 443.4 561 54.7
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 2.5e-122 443.4 534 53.9
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.8e-121 439.9 549 53.4
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 3.6e-121 439.5 568 50.2
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 3.6e-121 439.5 559 54.6
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.6e-121 439.5 555 53.9
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 6.2e-121 438.7 549 53.7
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 3.4e-119 433.0 558 50.2
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.3e-118 431.0 588 51.0
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 7.1e-117 425.2 570 50.9
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 9.2e-117 424.9 552 52.9
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 2.1e-116 423.7 564 52.3
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.0e-115 421.4 537 55.1
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.7e-115 420.6 557 49.6
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 2.3e-115 420.2 564 49.5
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.3e-115 420.2 565 52.7
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 3.0e-115 419.9 563 48.3
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 3.9e-115 419.5 550 47.6
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 3.9e-115 419.5 544 52.0
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.9e-114 417.2 559 51.5
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 8.9e-112 408.3 544 54.0
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.3e-110 404.4 537 52.9
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.3e-110 404.4 542 53.9
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.3e-110 404.4 550 53.3
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 2.4e-109 400.2 564 50.4
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.2e-109 399.8 562 50.7
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.3e-107 393.7 556 50.7
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 3.0e-107 393.3 632 46.7
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 8.7e-107 391.7 563 49.7
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 2.5e-106 390.2 555 47.9
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.6e-105 387.5 591 43.1
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 2.1e-105 387.1 607 46.1
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 2.4e-104 383.6 539 49.4
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 4.0e-104 382.9 554 51.4
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 4.0e-104 382.9 540 50.7
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.8e-103 379.0 544 51.8
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 9.9e-103 378.3 546 52.0
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.2e-102 377.1 539 48.4
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.1e-101 374.8 532 50.4
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.9e-101 374.0 510 48.2
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 2.1e-100 370.5 554 46.0
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 6.0e-100 369.0 539 48.2
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 6.0e-100 369.0 552 49.5
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.0e-99 368.2 539 48.8
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.3e-99 367.9 557 44.9
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 1.8e-99 367.5 540 50.7
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 3.0e-99 366.7 560 45.9
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.4e-98 362.1 549 50.8
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 9.6e-98 361.7 512 50.2
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.6e-97 360.9 562 45.6
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.1e-97 358.6 549 50.5
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-96 358.2 545 51.0
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 1.4e-96 357.8 541 48.6
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.4e-96 357.8 471 50.5
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.2e-95 354.8 463 50.1
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 1.2e-95 354.8 561 43.3
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 1.5e-95 354.4 561 43.9
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.7e-94 350.9 540 48.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 1.7e-94 350.9 475 50.1
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 2.9e-94 350.1 538 47.2
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.4e-93 347.8 542 48.5
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 3.2e-93 346.7 542 43.4
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 4.2e-93 346.3 546 48.4
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.2e-92 344.7 548 42.5
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.3e-91 341.3 545 48.3
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.9e-90 337.4 520 45.8
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 5.6e-90 335.9 539 47.9
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 2.8e-89 333.6 435 49.9
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 3.7e-89 333.2 547 46.6
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.5e-87 327.8 546 42.1
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 4.5e-87 326.2 570 41.8
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 3.8e-86 323.2 548 46.7
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 3.8e-86 323.2 548 46.7
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.0e-83 315.1 531 44.3
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 2.3e-83 313.9 689 36.7
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 8.2e-81 305.4 584 40.1
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 6.3e-73 279.3 565 41.4
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 3.4e-71 273.5 520 45.0
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 5.0e-70 269.6 379 45.4
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 3.2e-69 266.9 529 43.7
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 3.2e-69 266.9 300 53.3
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 3.9e-67 260.0 526 44.3
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 3.9e-67 260.0 526 44.3
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.1e-66 258.5 590 35.9
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 9.1e-64 248.8 330 49.4
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 2.7e-60 237.3 310 49.0
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 3.3e-58 230.3 411 44.3
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-52 211.8 412 45.1
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 5.9e-47 193.0 257 58.8
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 1.0e-43 182.2 599 32.9
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 3.0e-43 180.6 196 52.0
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 7.5e-42 176.0 606 31.0
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.7e-41 174.9 304 45.7
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.7e-38 164.9 118 70.3
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 5.0e-38 163.3 427 34.9
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.7e-33 147.1 115 67.8
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.1e-32 145.6 222 44.6
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.8e-32 144.8 728 27.3
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-30 138.7 264 45.5
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.7e-30 138.3 197 51.3
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.5e-29 135.2 410 33.4
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.1e-28 131.3 466 31.1
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 5.6e-21 106.7 480 27.5
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 8.9e-19 99.4 217 40.1
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.2e-18 99.0 88 56.8
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.0e-15 88.2 140 45.7
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.5e-15 87.4 86 50.0
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.1e-13 82.4 117 43.6
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 4.0e-11 73.9 425 26.4
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 4.4e-10 70.5 101 44.6
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.9e-09 67.8 114 47.4
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.4e-08 65.5 142 38.0
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.2e-07 62.4 174 29.3
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 2.1e-07 61.6 371 26.4
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.3e-06 58.9 203 35.5


User provided reference genes

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