Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11939_v3 Cicer arietinum L. HOM05D000476 ORTHO05D028872 4.5e-66 254.6 144 100.0
Ca_03300_v3 Cicer arietinum L. HOM05D000476 ORTHO05D005719 3.4e-53 211.8 118 94.1
Medtr1g112850 Medicago truncatula HOM05D000476 ORTHO05D005719 6.2e-47 191.0 122 84.4
Phvul.007G018200 Phaseolus vulgaris HOM05D000476 ORTHO05D005719 1.4e-46 189.9 119 83.2
Glyma.20G106700 Glycine max HOM05D000476 ORTHO05D005719 3.1e-46 188.7 123 82.9
Psat6g232560 Pisum sativum HOM05D000476 ORTHO05D005719 7.5e-45 184.1 121 81.0
VMungo0720G1528 Vigna mungo HOM05D000476 ORTHO05D005719 7.5e-45 184.1 118 81.4
TPR.G2472 Trifolium pratense HOM05D000476 ORTHO05D005719 1.4e-43 179.9 128 80.5
Lj5g0010360 Lotus japonicus HOM05D000476 ORTHO05D005719 1.6e-42 176.4 117 82.9
Glyma.10G283000 Glycine max HOM05D000476 ORTHO05D005719 8.6e-41 170.6 110 82.7
QL11p051500 Quercus lobata HOM05D000476 ORTHO05D005719 2.5e-40 169.1 112 78.6
Duzib132G1235 Durio zibethinus HOM05D000476 ORTHO05D005719 8.9e-38 160.6 120 69.2
Duzib248G0030 Durio zibethinus HOM05D000476 ORTHO05D005719 8.9e-38 160.6 120 69.2
Haze_02112 Corylus avellana HOM05D000476 ORTHO05D005719 1.5e-37 159.8 115 73.9
Thecc.02G056200 Theobroma cacao HOM05D000476 ORTHO05D005719 2.6e-37 159.1 120 67.5
Cfa005281 Carpinus fangiana HOM05D000476 ORTHO05D005719 4.4e-37 158.3 114 73.7
arahy.Tifrunner.gnm1.ann1.5E9YX9 Arachis hypogaea HOM05D000476 ORTHO05D005719 9.9e-37 157.1 125 71.2
arahy.Tifrunner.gnm1.ann1.FXE6P8 Arachis hypogaea HOM05D000476 ORTHO05D005719 3.7e-36 155.2 125 72.0
Gorai.002G199800 Gossypium raimondii HOM05D000476 ORTHO05D005719 3.2e-35 152.1 120 66.7
Manes.04G071400 Manihot esculenta HOM05D000476 ORTHO05D005719 3.2e-35 152.1 109 74.3
Gohir.A01G170100 Gossypium hirsutum HOM05D000476 ORTHO05D005719 5.4e-35 151.4 120 66.7
Hma1.2p1_0163F.1_g072630 Hydrangea macrophylla HOM05D000476 ORTHO05D005719 5.4e-35 151.4 115 70.4
TWI75G0421 Tripterygium wilfordii HOM05D000476 ORTHO05D005719 5.4e-35 151.4 119 68.9
Gohir.D01G161200 Gossypium hirsutum HOM05D000476 ORTHO05D005719 7.1e-35 151.0 120 66.7
Aqoxy5G01114 Aquilegia oxysepala HOM05D000476 ORTHO05D005719 9.2e-35 150.6 119 66.4
Lalb_Chr21g0307031 Lupinus albus HOM05D000476 ORTHO05D005719 7.8e-34 147.5 119 68.9
ClCG02G012060 Citrullus lanatus HOM05D000476 ORTHO05D005719 1.0e-33 147.1 112 71.4
Potri.009G137500 Populus trichocarpa HOM05D000476 ORTHO05D005719 1.0e-33 147.1 120 70.8
Oeu029648.1 Olea europaea HOM05D000476 ORTHO05D005719 2.3e-33 146.0 106 71.7
CsaV3_2G016220 Cucumis sativus L. HOM05D000476 ORTHO05D005719 3.0e-33 145.6 112 71.4
Dinv14122 Davidia involucrata HOM05D000476 ORTHO05D005719 3.0e-33 145.6 107 69.2
CSS0012841 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D005719 3.9e-33 145.2 114 66.7
Dinv41922 Davidia involucrata HOM05D000476 ORTHO05D005719 3.9e-33 145.2 119 66.4
TAR381G1633 Trochodendron aralioides HOM05D000476 ORTHO05D005719 3.9e-33 145.2 116 69.0
MELO3C020830.2 Cucumis melo HOM05D000476 ORTHO05D005719 5.1e-33 144.8 112 71.4
Eucgr.I01453 Eucalyptus grandis HOM05D000476 ORTHO05D005719 5.1e-33 144.8 118 67.8
Peaxi162Scf00362g00535 Petunia axillaris HOM05D000476 ORTHO05D005719 1.1e-32 143.7 117 64.1
Sed0002256 Sechium edule HOM05D000476 ORTHO05D005719 1.1e-32 143.7 109 75.2
TAR381G1494 Trochodendron aralioides HOM05D000476 ORTHO05D005719 1.5e-32 143.3 114 71.1
Nn6g31926 Nelumbo nucifera HOM05D000476 ORTHO05D005719 3.3e-32 142.1 120 65.0
Cc09_g10250 Coffea canephora HOM05D000476 ORTHO05D005719 4.3e-32 141.7 115 64.3
Potri.004G177200 Populus trichocarpa HOM05D000476 ORTHO05D005719 4.3e-32 141.7 111 71.2
THA.LOC104804321 Tarenaya hassleriana HOM05D000476 ORTHO05D005719 4.3e-32 141.7 116 67.2
TWI31G0618 Tripterygium wilfordii HOM05D000476 ORTHO05D005719 4.3e-32 141.7 109 69.7
GSVIVG01023992001 Vitis vinifera HOM05D000476 ORTHO05D005719 4.3e-32 141.7 104 71.2
Actinidia20522 Actinidia chinensis HOM05D000476 ORTHO05D005719 5.6e-32 141.4 108 67.6
Migut.B00063 Erythranthe guttata HOM05D000476 ORTHO05D005719 5.6e-32 141.4 111 68.5
Sabra09G0106700 Salix brachista HOM05D000476 ORTHO05D005719 9.5e-32 140.6 120 69.2
FvH4_2g15580 Fragaria vesca HOM05D000476 ORTHO05D005719 1.2e-31 140.2 118 66.1
FAN24G1070 Fragaria x ananassa HOM05D000476 ORTHO05D005719 1.2e-31 140.2 118 66.1
MD05G1124400 Malus domestica HOM05D000476 ORTHO05D005719 1.6e-31 139.8 120 65.0
Sabra04G0119100 Salix brachista HOM05D000476 ORTHO05D005719 1.6e-31 139.8 111 71.2
Sopen01g053780 Solanum pennellii HOM05D000476 ORTHO05D005719 1.6e-31 139.8 117 63.2
PGSC0003DMG400018042 Solanum tuberosum HOM05D000476 ORTHO05D005719 1.6e-31 139.8 117 63.2
RcHm_v2.0_Chr6g0278761 Rosa chinensis HOM05D000476 ORTHO05D005719 2.8e-31 139.0 117 65.0
Nitab4.5_0004864g0010 Nicotiana tabacum HOM05D000476 ORTHO05D005719 3.6e-31 138.7 112 64.3
Nitab4.5_0003698g0070 Nicotiana tabacum HOM05D000476 ORTHO05D005719 4.7e-31 138.3 116 62.1
Rhsim11G0193200 Rhododendron simsii HOM05D000476 ORTHO05D005719 4.7e-31 138.3 113 67.3
Actinidia18045 Actinidia chinensis HOM05D000476 ORTHO05D005719 6.2e-31 137.9 114 66.7
CANSAT25G2378 Cannabis sativa HOM05D000476 ORTHO05D005719 6.2e-31 137.9 115 65.2
vmacro02286 Vaccinium macrocarpon HOM05D000476 ORTHO05D005719 8.1e-31 137.5 113 67.3
Ciclev10030360m.g Citrus clementina HOM05D000476 ORTHO05D005719 1.1e-30 137.1 123 63.4
PSO210G5945 Papaver somniferum HOM05D000476 ORTHO05D005719 1.1e-30 137.1 116 62.9
Solyc01g111740.3 Solanum lycopersicum HOM05D000476 ORTHO05D005719 1.8e-30 136.3 117 62.4
CAN.G588.95 Capsicum annuum HOM05D000476 ORTHO05D005719 2.4e-30 136.0 100 72.0
Cpa.g.sc20.106 Carica papaya HOM05D000476 ORTHO05D005719 3.1e-30 135.6 114 64.9
MSTRG.16926 Avicennia marina HOM05D000476 ORTHO05D005719 5.2e-30 134.8 107 65.4
FAN27G1175 Fragaria x ananassa HOM05D000476 ORTHO05D005719 1.2e-29 133.7 115 66.1
FAN15G2981 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.6e-29 132.5 113 65.5
FAN20G0044 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.6e-29 132.5 115 63.5
Sc18g0006370 Simmondsia chinensis HOM05D000476 ORTHO05D005719 2.6e-29 132.5 109 66.1
Ah.01g008190 Amaranthus hybridus HOM05D000476 ORTHO05D005719 3.4e-29 132.1 127 58.3
EL10Ac9g21346 Beta vulgaris HOM05D000476 ORTHO05D005719 7.6e-29 131.0 106 67.9
PSO170G5898 Papaver somniferum HOM05D000476 ORTHO05D005719 7.6e-29 131.0 104 65.4
MD10G1127200 Malus domestica HOM05D000476 ORTHO05D005719 1.3e-28 130.2 121 61.2
Sed0017619 Sechium edule HOM05D000476 ORTHO05D005719 2.9e-28 129.0 116 63.8
Prupe.8G168100 Prunus persica HOM05D000476 ORTHO05D005719 8.4e-28 127.5 110 68.2
Prupe.7G174500 Prunus persica HOM05D000476 ORTHO05D005719 1.9e-27 126.3 105 61.9
CiPaw.05G084600 Carya illinoinensis HOM05D000476 ORTHO05D005719 3.2e-27 125.6 108 64.8
Ah.01g023180 Amaranthus hybridus HOM05D000476 ORTHO05D005719 7.1e-27 124.4 104 65.4
Dinv40142 Davidia involucrata HOM05D000476 ORTHO05D005719 7.1e-27 124.4 118 58.5
QL06p051967 Quercus lobata HOM05D000476 ORTHO05D005719 1.2e-26 123.6 105 60.0
SalBow1G8296 Salvia bowleyana HOM05D000476 ORTHO05D005719 1.2e-26 123.6 106 65.1
Lsat_1_v5_gn_4_71841 Lactuca sativa HOM05D000476 ORTHO05D005719 1.6e-26 123.2 97 72.2
Lj9A397G33 Lonicera japonica HOM05D000476 ORTHO05D005719 2.7e-26 122.5 118 61.9
Lj9C400T3 Lonicera japonica HOM05D000476 ORTHO05D005719 7.8e-26 120.9 118 61.0
Hund06447 Selenicereus undatus HOM05D000476 ORTHO05D005719 7.8e-26 120.9 123 54.5
COL.COLO4_17370 Corchorus olitorius HOM05D000476 ORTHO05D005719 1.0e-25 120.6 129 55.8
unitig_0.g814 Utricularia gibba HOM05D000476 ORTHO05D005719 1.3e-25 120.2 120 56.7
HanXRQChr10g0300811 Helianthus annuus HOM05D000476 ORTHO05D005719 1.7e-25 119.8 113 63.7
Atru.chr5.3386 Acer truncatum HOM05D000476 ORTHO05D005719 5.1e-25 118.2 136 54.4
GSVIVG01005188001 Vitis vinifera HOM05D000476 ORTHO05D005719 8.7e-25 117.5 107 60.7
GSVIVG01006889001 Vitis vinifera HOM05D000476 ORTHO05D005719 8.7e-25 117.5 107 60.7
SGA_v2.0_scaffold58G20351 Striga asiatica HOM05D000476 ORTHO05D005719 1.1e-24 117.1 118 56.8
COL.COLO4_22490 Corchorus olitorius HOM05D000476 ORTHO05D005719 5.6e-24 114.8 109 56.0
Thecc.01G012000 Theobroma cacao HOM05D000476 ORTHO05D005719 5.6e-24 114.8 107 58.9
Gohir.A02G173900 Gossypium hirsutum HOM05D000476 ORTHO05D005719 9.6e-24 114.0 111 55.9
CANSAT01G2246 Cannabis sativa HOM05D000476 ORTHO05D005719 4.7e-23 111.7 110 56.4
DCAR_022959 Daucus carota HOM05D000476 ORTHO05D005719 1.4e-22 110.2 123 57.7
Gohir.D03G005900 Gossypium hirsutum HOM05D000476 ORTHO05D005719 1.8e-22 109.8 103 59.2
Gorai.003G006300 Gossypium raimondii HOM05D000476 ORTHO05D005719 1.8e-22 109.8 103 59.2
Duzib147G1555 Durio zibethinus HOM05D000476 ORTHO05D005719 4.0e-22 108.6 107 58.9
Potri.005G108400 Populus trichocarpa HOM05D000476 ORTHO05D005719 4.0e-22 108.6 113 50.4
Manes.02G109900 Manihot esculenta HOM05D000476 ORTHO05D005719 5.2e-22 108.2 106 55.7
PGR142G3087 Punica granatum HOM05D000476 ORTHO05D005719 6.9e-22 107.8 101 62.4
FAN23G2355 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.0e-21 106.3 113 57.5
FAN26G0730 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.0e-21 106.3 113 57.5
Manes.01G150500 Manihot esculenta HOM05D000476 ORTHO05D005719 2.0e-21 106.3 120 53.3
FvH4_1g11140 Fragaria vesca HOM05D000476 ORTHO05D005719 2.6e-21 105.9 98 62.2
FAN19G2503 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.6e-21 105.9 98 62.2
RcHm_v2.0_Chr2g0098421 Rosa chinensis HOM05D000476 ORTHO05D005719 5.8e-21 104.8 107 58.9
Haze_03708 Corylus avellana HOM05D000476 ORTHO05D005719 9.9e-21 104.0 78 67.9
FAN28G1417 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.2e-20 102.8 113 55.8
Hma1.2p1_0561F.1_g178970 Hydrangea macrophylla HOM05D000476 ORTHO05D005719 2.2e-20 102.8 97 60.8
ECA234G3651 Erigeron canadensis HOM05D000476 ORTHO05D005719 1.4e-19 100.1 103 62.1
SGA_v2.0_scaffold241G44210 Striga asiatica HOM05D000476 ORTHO05D028872 2.4e-19 99.4 113 51.3
AUR62010017 Chenopodium quinoa HOM05D000476 ORTHO05D005719 7.1e-19 97.8 99 55.6
Sabra05G0088800 Salix brachista HOM05D000476 ORTHO05D005719 2.7e-18 95.9 113 46.0
Cpa.g.sc6.308 Carica papaya HOM05D000476 ORTHO05D005719 6.0e-18 94.7 121 47.1
SGA_v2.0_scaffold55G19717 Striga asiatica HOM05D000476 ORTHO05D028872 2.3e-17 92.8 111 51.4
CDE09G0394 Ceratophyllum demersum HOM05D000476 ORTHO05D005719 5.6e-16 88.2 122 48.4
Lj2A484T43 Lonicera japonica HOM05D000476 ORTHO05D005719 1.6e-15 86.7 82 58.5
HPP92_020729 Vanilla planifolia HOM05D000476 ORTHO05D005719 1.4e-14 83.6 106 50.9
Nn5g30832 Nelumbo nucifera HOM05D000476 ORTHO05D005719 2.0e-13 79.7 100 51.0
Lsat_1_v5_gn_4_144401 Lactuca sativa HOM05D000476 ORTHO05D005719 4.5e-13 78.6 90 51.1
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 4.6e-10 68.6 90 45.6
HanXRQChr09g0257241 Helianthus annuus HOM05D000476 ORTHO05D005719 6.0e-10 68.2 109 42.2
AUR62026229 Chenopodium quinoa HOM05D000476 ORTHO05D005719 7.9e-10 67.8 76 44.7
CDE02G2797 Ceratophyllum demersum HOM05D000476 ORTHO05D005719 6.7e-09 64.7 81 51.9
Atru.chr3.902 Acer truncatum HOM05D000476 ORTHO05D005719 2.5e-08 62.8 71 53.5
Ciclev10027576m.g Citrus clementina HOM05D000476 ORTHO05D005719 9.6e-08 60.8 118 39.0
Hund14172 Selenicereus undatus HOM05D000476 ORTHO05D005719 1.3e-07 60.5 100 43.0
Cfa007026 Carpinus fangiana HOM05D000476 ORTHO05D005719 1.6e-07 60.1 81 46.9
EL10Ac6g13329 Beta vulgaris HOM05D000476 ORTHO05D005719 2.8e-07 59.3 62 48.4
Os10g0562700 Oryza sativa ssp. japonica HOM05D000818 ORTHO05D001324 1.8e-06 56.6 86 43.0
SEGI_19064 Sequoiadendron giganteum HOM05D000476 ORTHO05D004793 2.4e-06 56.2 81 43.2
CANSAT11G0766 Cannabis sativa HOM05D000476 ORTHO05D004987 4.0e-06 55.5 97 38.1
Gohir.A08G058500 Gossypium hirsutum HOM05D000818 ORTHO05D001324 4.0e-06 55.5 91 38.5
Prupe.7G174400 Prunus persica HOM05D000476 ORTHO05D005719 5.3e-06 55.1 118 39.0
Gohir.D11G080100 Gossypium hirsutum HOM05D000818 ORTHO05D001324 6.9e-06 54.7 86 40.7
Sc03g0003760 Simmondsia chinensis HOM05D000476 ORTHO05D005719 9.0e-06 54.3 74 43.2


User provided reference genes

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