Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 0.0e+00 1415.2 770 100.0
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 0.0e+00 1152.1 778 83.3
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 0.0e+00 1088.2 781 80.3
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 2.6e-311 1071.6 768 80.3
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 7.8e-282 973.8 776 73.1
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.1e-267 926.8 740 72.3
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 8.7e-265 917.1 792 69.8
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 2.5e-251 872.5 778 67.2
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 2.3e-249 865.9 809 66.0
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 8.8e-241 837.4 778 65.4
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 9.7e-240 833.9 792 65.2
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 7.4e-232 807.7 790 63.8
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.4e-214 750.4 818 60.1
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 8.6e-172 608.2 815 52.5
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 7.3e-171 605.1 818 50.5
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 3.9e-164 582.8 814 50.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 3.1e-161 573.2 829 50.2
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 6.4e-159 565.5 791 50.7
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.9e-158 563.9 810 49.0
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 1.8e-153 547.4 819 48.8
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.0e-152 543.9 797 49.6
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.3e-148 530.4 818 47.9
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 5.1e-148 529.3 832 46.5
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.5e-147 527.7 803 49.3
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.7e-146 523.1 806 47.6
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.2e-144 518.1 805 47.8
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 2.6e-144 516.9 840 46.2
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 4.9e-143 512.7 820 46.7
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-140 504.2 800 47.6
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.3e-140 503.8 807 44.2
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 3.0e-140 503.4 812 45.9
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.0e-140 503.4 827 46.8
Glyma.10G128300 Glycine max HOM05D003628 ORTHO05D004253 3.9e-140 503.1 446 67.0
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 4.3e-139 499.6 819 47.3
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-138 498.0 797 47.4
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 4.5e-136 489.6 812 46.4
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 1.6e-133 481.1 828 45.3
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 4.6e-133 479.6 826 43.5
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 6.1e-133 479.2 749 46.6
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.0e-132 478.4 800 46.2
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.0e-132 476.9 796 46.0
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.0e-132 476.9 801 46.3
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 3.3e-131 473.4 827 44.1
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 4.3e-131 473.0 644 50.5
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 1.4e-129 468.0 897 42.5
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 1.4e-129 468.0 811 45.3
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 6.9e-129 465.7 808 44.3
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 2.0e-128 464.2 808 44.4
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-126 457.6 802 44.4
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 7.2e-126 455.7 827 43.4
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 9.4e-126 455.3 852 41.9
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.7e-125 453.8 818 44.1
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 2.7e-125 453.8 797 44.3
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.1e-124 449.5 455 61.1
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.5e-123 448.0 832 41.9
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 7.4e-123 445.7 849 42.0
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.7e-122 444.5 996 38.6
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 3.7e-122 443.4 786 43.6
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 8.2e-122 442.2 802 44.8
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 1.1e-121 441.8 797 43.7
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 3.1e-121 440.3 811 43.4
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 5.3e-121 439.5 832 42.5
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.2e-120 438.3 849 42.0
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 1.3e-119 434.9 828 42.9
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.3e-119 434.9 833 42.4
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.2e-119 434.1 789 44.2
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 4.2e-118 429.9 791 43.6
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 5.5e-118 429.5 791 43.2
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.2e-117 428.3 800 43.4
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 2.1e-117 427.6 828 43.4
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 4.7e-117 426.4 295 81.7
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.4e-113 414.1 682 45.3
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.6e-112 411.4 778 42.8
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 2.6e-112 410.6 840 40.4
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 4.5e-112 409.8 795 41.1
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.3e-111 408.3 820 42.7
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 2.2e-111 407.5 819 41.6
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 3.8e-111 406.8 799 40.4
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.5e-110 404.8 425 59.8
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 9.4e-110 402.1 799 40.1
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.0e-108 398.7 798 42.0
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 1.4e-108 398.3 827 41.7
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.8e-108 397.9 800 40.9
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 4.4e-107 393.3 828 40.7
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.7e-106 391.3 820 39.9
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 8.2e-106 389.0 820 40.1
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 7.7e-104 382.5 373 61.4
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.5e-102 378.3 812 40.5
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 1.5e-102 378.3 832 40.0
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 1.2e-101 375.2 799 40.7
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.0e-100 370.5 825 38.8
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 4.4e-99 366.7 788 39.7
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 1.3e-98 365.2 777 39.4
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 2.2e-98 364.4 844 38.5
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 6.3e-98 362.8 780 40.0
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 1.8e-97 361.3 805 39.3
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 2.4e-97 360.9 550 46.7
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 6.5e-95 352.8 780 38.8
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 8.5e-95 352.4 752 39.5
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 1.9e-94 351.3 780 40.0
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 2.3e-92 344.4 619 42.2
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 2.8e-90 337.4 791 38.4
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 3.5e-88 330.5 774 39.7
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 5.9e-88 329.7 807 36.9
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 7.7e-88 329.3 780 39.4
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 3.8e-87 327.0 776 38.3
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 6.6e-87 326.2 654 41.0
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 3.6e-85 320.5 606 42.7
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 3.6e-85 320.5 800 37.4
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 6.1e-85 319.7 651 40.4
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 1.0e-84 318.9 801 36.1
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 1.0e-84 318.9 797 36.9
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 5.2e-84 316.6 772 36.8
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 1.5e-83 315.1 714 38.5
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 5.7e-83 313.2 719 38.4
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 9.8e-83 312.4 781 36.0
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 9.8e-83 312.4 495 45.5
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 1.7e-82 311.6 819 37.0
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 1.4e-81 308.5 785 38.1
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.4e-81 307.8 812 35.8
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 6.6e-79 299.7 775 37.2
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 2.5e-78 297.7 757 37.8
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 3.3e-78 297.4 789 36.4
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 5.6e-78 296.6 618 40.0
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 3.6e-77 293.9 740 35.4
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 3.4e-75 287.3 612 39.2
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 2.2e-74 284.6 521 43.0
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 2.2e-74 284.6 787 35.6
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 3.2e-73 280.8 610 39.0
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 3.5e-72 277.3 518 41.7
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 2.3e-71 274.6 561 41.5
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 3.9e-71 273.9 830 34.6
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 2.1e-69 268.1 626 38.8
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.1e-68 265.8 604 37.3
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.0e-63 247.7 802 33.8
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.7e-58 231.9 577 38.5
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 5.4e-49 200.3 420 38.3
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 7.8e-48 196.4 330 44.8
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 4.8e-45 187.2 419 37.0
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 4.0e-44 184.1 575 33.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 4.0e-44 184.1 422 35.8
Lj6A641G44 Lonicera japonica HOM05D003628 ORTHO05D004253 5.3e-44 183.7 655 33.1
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 4.6e-40 170.6 353 38.2
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 1.1e-38 166.0 171 57.9
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 9.6e-38 162.9 388 36.1
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 3.8e-34 151.0 387 36.7
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 1.4e-33 149.1 113 68.1
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 3.0e-31 141.4 100 75.0
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 1.8e-28 132.1 92 76.1
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 2.5e-25 121.7 141 54.6
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 2.1e-24 118.6 400 29.2
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.8e-23 115.5 186 45.7
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-19 102.4 68 82.4
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.5e-19 102.4 234 37.6
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.5e-18 97.1 66 78.8
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.2e-17 94.7 143 42.0
Actinidia11386 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.7e-16 91.7 538 28.3
Gorai.007G071000 Gossypium raimondii HOM05D003628 ORTHO05D004253 2.7e-16 91.7 75 66.7
Gorai.007G244100 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.0e-15 89.7 63 76.2
Gohir.D03G086101 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-15 89.4 80 62.5
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.0e-15 88.2 80 62.5
PGSC0003DMG402011586 Solanum tuberosum HOM05D003628 ORTHO05D004253 2.5e-14 85.1 62 67.7
Oeu023150.1 Olea europaea HOM05D003628 ORTHO05D004253 4.3e-14 84.3 55 72.7
Gohir.D06G132966 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-13 82.8 54 79.6
Gorai.010G154900 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-13 82.8 55 78.2
Gohir.D02G158575 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.8e-13 81.6 63 69.8
Gohir.D08G229150 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-13 80.9 55 76.4
Gohir.D11G226200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.8e-13 80.9 54 79.6
Gohir.D08G165950 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-11 75.9 50 80.0
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.4e-11 74.7 123 42.3
Gorai.013G043600 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.5e-11 74.3 50 78.0
Ah.14g082010 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.7e-10 72.4 51 74.5
AL2G14740 Arabidopsis lyrata HOM05D000013 ORTHO05D000011 6.5e-10 70.5 125 41.6
Gohir.D11G243366 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-09 68.9 63 65.1
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.6e-08 65.9 76 50.0
HPP92_026453 Vanilla planifolia HOM05D003628 ORTHO05D004253 4.6e-08 64.3 84 51.2
Gohir.D04G051401 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.4e-07 62.8 63 65.1
Gohir.A02G090400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-07 62.0 70 60.0
TPR.G8204 Trifolium pratense HOM05D000108 ORTHO05D022289 2.3e-07 62.0 40 85.0
Gorai.004G113400 Gossypium raimondii HOM05D003628 ORTHO05D004253 6.7e-07 60.5 63 61.9
Gohir.D01G060866 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.0e-06 58.9 39 74.4
Gohir.D12G066350 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.4e-06 57.8 63 60.3
Gohir.A11G239380 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.7e-06 57.4 39 71.8
Gohir.D06G084232 Gossypium hirsutum HOM05D003628 ORTHO05D016264 7.4e-06 57.0 37 75.7
Gorai.009G342200 Gossypium raimondii HOM05D003628 ORTHO05D016264 7.4e-06 57.0 37 75.7


User provided reference genes

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