Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11749_v3 Cicer arietinum L. HOM05D005760 ORTHO05D007113 0.0e+00 2869.0 1456 100.0
TPR.G22709 Trifolium pratense HOM05D005760 ORTHO05D007113 0.0e+00 2492.2 1536 84.6
Medtr1g050670 Medicago truncatula HOM05D005760 ORTHO05D007113 0.0e+00 2476.4 1460 87.7
Psat6g094080 Pisum sativum HOM05D005760 ORTHO05D007113 0.0e+00 2476.0 1462 87.5
Glyma.02G158100 Glycine max HOM05D005760 ORTHO05D007113 0.0e+00 2387.1 1468 83.8
Lj5g0008525 Lotus japonicus HOM05D005760 ORTHO05D007113 0.0e+00 2342.4 1464 82.0
Phvul.007G245600 Phaseolus vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 2338.5 1467 83.1
arahy.Tifrunner.gnm1.ann1.H1JXTH Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 2184.8 1505 76.0
arahy.Tifrunner.gnm1.ann1.BNJ0D6 Arachis hypogaea HOM05D005760 ORTHO05D007113 0.0e+00 2176.4 1505 75.7
VMungo0720G1167 Vigna mungo HOM05D005760 ORTHO05D007113 0.0e+00 1989.2 1261 81.3
Cfa013846 Carpinus fangiana HOM05D005760 ORTHO05D007113 0.0e+00 1864.4 1462 68.0
Haze_22520 Corylus avellana HOM05D005760 ORTHO05D007113 0.0e+00 1859.7 1489 66.9
QL02p033685 Quercus lobata HOM05D005760 ORTHO05D007113 0.0e+00 1857.4 1460 68.4
Prupe.8G057200 Prunus persica HOM05D005760 ORTHO05D007113 0.0e+00 1794.6 1465 66.1
CiPaw.08G058900 Carya illinoinensis HOM05D005760 ORTHO05D007113 0.0e+00 1781.5 1465 65.3
Thecc.08G184000 Theobroma cacao HOM05D005760 ORTHO05D007113 0.0e+00 1778.1 1465 64.4
Dinv41715 Davidia involucrata HOM05D005760 ORTHO05D007113 0.0e+00 1763.4 1484 64.4
COL.COLO4_04233 Corchorus olitorius HOM05D005760 ORTHO05D007113 0.0e+00 1761.9 1470 64.2
MD10G1047900 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1761.5 1465 64.9
Sabra19G0094600 Salix brachista HOM05D005760 ORTHO05D007113 0.0e+00 1756.1 1480 64.8
MD05G1041500 Malus domestica HOM05D005760 ORTHO05D007113 0.0e+00 1747.3 1470 65.0
Atru.chr13.1758 Acer truncatum HOM05D005760 ORTHO05D007113 0.0e+00 1736.5 1465 64.5
Manes.18G101200 Manihot esculenta HOM05D005760 ORTHO05D007113 0.0e+00 1736.5 1473 63.1
Ciclev10000028m.g Citrus clementina HOM05D005760 ORTHO05D007113 0.0e+00 1736.1 1484 63.9
Gorai.009G263800 Gossypium raimondii HOM05D005760 ORTHO05D007113 0.0e+00 1731.5 1471 63.2
Gohir.D05G253200 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1730.3 1471 63.1
CANSAT78G0610 Cannabis sativa HOM05D005760 ORTHO05D007113 0.0e+00 1709.5 1461 62.1
Actinidia23335 Actinidia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1706.4 1484 62.9
RcHm_v2.0_Chr6g0272031 Rosa chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1672.5 1461 61.8
TAR628G1581 Trochodendron aralioides HOM05D005760 ORTHO05D007113 0.0e+00 1662.1 1490 60.9
Nn1g08372 Nelumbo nucifera HOM05D005760 ORTHO05D007113 0.0e+00 1661.7 1476 60.3
ClCG11G008140 Citrullus lanatus HOM05D005760 ORTHO05D007113 0.0e+00 1656.7 1477 60.7
TWI34G1956 Tripterygium wilfordii HOM05D005760 ORTHO05D007113 0.0e+00 1655.6 1465 61.0
PGR102G0553 Punica granatum HOM05D005760 ORTHO05D007113 0.0e+00 1629.8 1473 60.8
CsaV3_2G033490 Cucumis sativus L. HOM05D005760 ORTHO05D007113 0.0e+00 1628.6 1476 59.8
Duzib116G0663 Durio zibethinus HOM05D005760 ORTHO05D007113 0.0e+00 1624.0 1474 59.8
GSVIVG01034473001 Vitis vinifera HOM05D005760 ORTHO05D007113 0.0e+00 1624.0 1453 61.6
Rhsim06G0094000 Rhododendron simsii HOM05D005760 ORTHO05D007113 0.0e+00 1602.0 1484 59.5
Hma1.2p1_0004F.1_g004045 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1578.5 1514 59.6
MSTRG.25441 Avicennia marina HOM05D005760 ORTHO05D007113 0.0e+00 1544.6 1468 58.0
FAN15G1969 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1535.8 1463 59.6
FvH4_2g11773 Fragaria vesca HOM05D005760 ORTHO05D007113 0.0e+00 1534.6 1467 59.2
SalBow7G4130 Salvia bowleyana HOM05D005760 ORTHO05D007113 0.0e+00 1529.6 1482 57.0
Hund27088 Selenicereus undatus HOM05D005760 ORTHO05D007113 0.0e+00 1528.1 1496 56.8
FAN24G1577 Fragaria x ananassa HOM05D005760 ORTHO05D007113 0.0e+00 1518.8 1492 58.1
EL10Ac1g00088 Beta vulgaris HOM05D005760 ORTHO05D007113 0.0e+00 1508.4 1481 57.0
Migut.C01256 Erythranthe guttata HOM05D005760 ORTHO05D007113 0.0e+00 1507.7 1463 57.4
CAN.G199.9 Capsicum annuum HOM05D005760 ORTHO05D007113 0.0e+00 1495.7 1466 56.7
MELO3C008121.2 Cucumis melo HOM05D005760 ORTHO05D007113 0.0e+00 1493.8 1481 56.2
Sopen06g023840 Solanum pennellii HOM05D005760 ORTHO05D007113 0.0e+00 1491.9 1460 57.7
Aqoxy6G00127 Aquilegia oxysepala HOM05D005760 ORTHO05D007113 0.0e+00 1491.5 1505 56.1
PSO170G3854 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1490.7 1503 56.0
Potri.019G083100 Populus trichocarpa HOM05D005760 ORTHO05D007113 0.0e+00 1489.2 1270 63.6
AUR62004640 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1484.9 1486 56.6
THA.LOC104806788 Tarenaya hassleriana HOM05D005760 ORTHO05D007113 0.0e+00 1483.0 1439 57.1
Sc23g0001270 Simmondsia chinensis HOM05D005760 ORTHO05D007113 0.0e+00 1479.2 1484 56.7
Lj4C503G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1471.1 1376 60.4
PSO782G3241 Papaver somniferum HOM05D005760 ORTHO05D007113 0.0e+00 1469.5 1507 55.8
vmacro12489 Vaccinium macrocarpon HOM05D005760 ORTHO05D007113 0.0e+00 1468.0 1543 55.3
DCAR_001048 Daucus carota HOM05D005760 ORTHO05D007113 0.0e+00 1460.7 1485 55.4
CSS0014231 Camellia sinensis var. sinensis HOM05D005760 ORTHO05D007113 0.0e+00 1460.3 1259 63.1
Nitab4.5_0000303g0150 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1456.4 1503 55.2
Cc10_g10700 Coffea canephora HOM05D005760 ORTHO05D007113 0.0e+00 1444.9 1374 57.3
Lalb_Chr03g0036151 Lupinus albus HOM05D005760 ORTHO05D007113 0.0e+00 1444.1 1043 74.1
Thhalv10001809m.g Eutrema salsugineum HOM05D005760 ORTHO05D007113 0.0e+00 1430.6 1462 55.7
Sp1g30370 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1416.0 1466 55.0
AL1G50540 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 0.0e+00 1411.0 1474 55.6
AUR62022696 Chenopodium quinoa HOM05D005760 ORTHO05D007113 0.0e+00 1410.2 1486 54.6
Ah.05g178160 Amaranthus hybridus HOM05D005760 ORTHO05D007113 0.0e+00 1407.1 1477 54.8
Lsat_1_v5_gn_1_10440 Lactuca sativa HOM05D005760 ORTHO05D007113 0.0e+00 1406.7 1465 54.7
Aa31LG6G8840 Aethionema arabicum HOM05D005760 ORTHO05D007113 0.0e+00 1404.0 1466 54.8
CARHR034440 Cardamine hirsuta HOM05D005760 ORTHO05D007113 0.0e+00 1401.3 1470 55.8
SGA_v2.0_scaffold118G32485 Striga asiatica HOM05D005760 ORTHO05D007113 0.0e+00 1394.0 1417 54.6
Carub.0001s3325 Capsella rubella HOM05D005760 ORTHO05D007113 0.0e+00 1392.1 1472 54.9
AT1G35660 Arabidopsis thaliana HOM05D005760 ORTHO05D007113 0.0e+00 1386.7 1471 55.6
C06p06840 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1355.1 1456 53.0
BolC6t35790H Brassica oleracea HOM05D005760 ORTHO05D007113 0.0e+00 1355.1 1458 53.1
BcaC08g43328 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1354.7 1457 53.1
A06p02320 Brassica napus HOM05D005760 ORTHO05D007113 0.0e+00 1345.9 1456 52.6
BraA06t23439Z Brassica rapa HOM05D005760 ORTHO05D007113 0.0e+00 1345.5 1456 52.7
BcaB07g33624 Brassica carinata HOM05D005760 ORTHO05D007113 0.0e+00 1338.9 1457 52.5
ATR0003G012 Amborella trichopoda HOM05D005760 ORTHO05D007113 0.0e+00 1323.9 1398 52.8
HanXRQChr04g0107521 Helianthus annuus HOM05D005760 ORTHO05D007113 0.0e+00 1306.6 1461 51.6
ECA152G0004 Erigeron canadensis HOM05D005760 ORTHO05D007113 0.0e+00 1300.4 1466 52.9
Nitab4.5_0002500g0010 Nicotiana tabacum HOM05D005760 ORTHO05D007113 0.0e+00 1271.5 1332 55.0
Os01g0873800 Oryza sativa ssp. japonica HOM05D005760 ORTHO05D007113 0.0e+00 1263.8 1464 49.0
Zm00001eb146280 Zea mays HOM05D005760 ORTHO05D007113 0.0e+00 1256.1 1474 48.9
Gohir.A05G250600 Gossypium hirsutum HOM05D005760 ORTHO05D007113 0.0e+00 1223.0 1110 60.8
Hma1.2p1_0004F.1_g004050 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 0.0e+00 1198.3 1089 61.7
Oeu000547.3 Olea europaea HOM05D005760 ORTHO05D007113 0.0e+00 1160.6 1173 54.7
SpUn0216_0010 Schrenkiella parvula HOM05D005760 ORTHO05D007113 0.0e+00 1157.1 1315 52.1
Sed0013995 Sechium edule HOM05D005760 ORTHO05D007113 0.0e+00 1147.9 1114 57.3
SEGI_03904 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 0.0e+00 1140.2 1355 49.7
Solyc06g065360.3 Solanum lycopersicum HOM05D005760 ORTHO05D007113 0.0e+00 1140.2 1145 56.1
Lj4C496G3 Lonicera japonica HOM05D005760 ORTHO05D007113 0.0e+00 1110.1 930 64.6
SHI09011 Sapria himalayana HOM05D005760 ORTHO05D007113 4.4e-302 1042.0 1333 46.6
Pp3c15_6380 Physcomitrium patens HOM05D005760 ORTHO05D007113 5.0e-253 879.0 1543 39.6
Pp3c15_6360 Physcomitrium patens HOM05D005760 ORTHO05D007113 1.1e-249 867.8 1504 40.1
Mapoly0036s0148 Marchantia polymorpha HOM05D005760 ORTHO05D007113 4.3e-249 865.9 1523 38.8
Eucgr.F04123 Eucalyptus grandis HOM05D005760 ORTHO05D007113 2.8e-248 863.2 1010 51.1
Peaxi162Scf00268g01123 Petunia axillaris HOM05D005760 ORTHO05D007113 9.4e-236 821.6 964 50.8
AagrBONN_evm.TU.Sc2ySwM_117.2253 Anthoceros agrestis HOM05D005760 ORTHO05D007113 7.5e-233 812.0 1550 37.5
unitig_0.g276 Utricularia gibba HOM05D005760 ORTHO05D007113 9.5e-204 715.3 810 50.5
Peaxi162Scf00268g01128 Petunia axillaris HOM05D005760 ORTHO05D007113 3.6e-203 713.4 530 69.8
Lalb_Chr03g0036141 Lupinus albus HOM05D005760 ORTHO05D007113 5.8e-201 706.1 422 82.9
QL02p033674 Quercus lobata HOM05D005760 ORTHO05D007113 9.3e-167 592.4 675 53.2
CBR_g40969 Chara braunii HOM05D005760 ORTHO05D007113 2.1e-163 581.3 1829 29.6
CDE08G1571 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.9e-152 544.3 879 41.6
Cpa.g.sc66.38 Carica papaya HOM05D005760 ORTHO05D007113 7.2e-143 513.1 580 52.9
unitig_0.g275 Utricularia gibba HOM05D005760 ORTHO05D007113 2.9e-136 491.1 591 49.2
Lj4A496G12 Lonicera japonica HOM05D005760 ORTHO05D007113 1.8e-133 481.9 446 59.6
SEGI_16135 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 1.7e-128 465.3 437 58.6
Carub.0001s0936 Capsella rubella HOM05D005760 ORTHO05D007113 1.3e-107 396.0 1352 28.4
Gohir.A05G250551 Gossypium hirsutum HOM05D005760 ORTHO05D007113 7.3e-87 327.0 228 72.4
BolC6t35788H Brassica oleracea HOM05D005760 ORTHO05D007113 3.0e-80 305.1 350 48.6
C06p06800 Brassica napus HOM05D005760 ORTHO05D007113 4.9e-75 287.7 266 58.3
Cpa.g.sc66.39 Carica papaya HOM05D005760 ORTHO05D007113 4.9e-75 287.7 398 45.5
QL02p033652 Quercus lobata HOM05D005760 ORTHO05D007113 1.8e-69 269.2 586 35.3
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 6.4e-67 260.8 260 56.2
AL1G47130 Arabidopsis lyrata HOM05D005760 ORTHO05D007113 1.2e-57 229.9 1151 25.1
FAN02G3326 Fragaria x ananassa HOM05D005760 ORTHO05D007113 4.2e-42 178.3 157 63.7
VMungo0720G0756 Vigna mungo HOM05D005760 ORTHO05D007113 1.5e-39 169.9 105 87.6
SHI09012 Sapria himalayana HOM05D005760 ORTHO05D007113 1.3e-22 113.6 80 68.8
Hma1.2p1_0004F.1_g004040 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 2.8e-22 112.5 89 66.3
Cc10_g10690 Coffea canephora HOM05D005760 ORTHO05D007113 3.1e-21 109.0 91 65.9
ATR1101G015 Amborella trichopoda HOM05D005760 ORTHO05D007113 3.8e-19 102.1 71 64.8
CDE08G0048 Ceratophyllum demersum HOM05D005760 ORTHO05D007113 2.1e-17 96.3 90 54.4
HPP92_025156 Vanilla planifolia HOM05D005760 ORTHO05D007113 1.7e-14 86.7 64 60.9
Cpa.g.sc66.41 Carica papaya HOM05D005760 ORTHO05D007113 1.1e-13 84.0 85 52.9
Hma1.2p1_0004F.1_g004060 Hydrangea macrophylla HOM05D005760 ORTHO05D007113 1.8e-13 83.2 103 45.6
ATR0003G024 Amborella trichopoda HOM05D005760 ORTHO05D007113 1.4e-10 73.6 81 44.4
Lj4C503T2 Lonicera japonica HOM05D005760 ORTHO05D007113 3.6e-09 68.9 102 44.1
Cpa.g.sc66.40 Carica papaya HOM05D005760 ORTHO05D007113 6.1e-09 68.2 54 63.0
SHI09014 Sapria himalayana HOM05D005760 ORTHO05D007113 3.3e-07 62.4 61 54.1
SEGI_08751 Sequoiadendron giganteum HOM05D005760 ORTHO05D007113 5.7e-07 61.6 72 51.4


User provided reference genes

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