Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11632_v3 Cicer arietinum L. HOM05D005095 ORTHO05D006156 2.1e-185 652.1 312 100.0
TPR.G5702 Trifolium pratense HOM05D005095 ORTHO05D006156 2.6e-167 592.0 313 89.8
Psat6g080360 Pisum sativum HOM05D005095 ORTHO05D006156 4.6e-164 581.3 312 87.5
Medtr1g060860 Medicago truncatula HOM05D005095 ORTHO05D006156 8.6e-163 577.0 312 86.5
Lj5g0003292 Lotus japonicus HOM05D005095 ORTHO05D006156 2.1e-156 555.8 312 84.0
Glyma.U031320 Glycine max HOM05D005095 ORTHO05D006156 6.6e-155 550.8 312 81.7
VMungo0720G2061 Vigna mungo HOM05D005095 ORTHO05D006156 3.4e-151 538.5 314 79.0
Lalb_Chr21g0315581 Lupinus albus HOM05D005095 ORTHO05D006156 1.2e-148 530.0 308 80.2
Phvul.007G222200 Phaseolus vulgaris HOM05D005095 ORTHO05D006156 6.6e-147 524.2 314 77.4
arahy.Tifrunner.gnm1.ann1.133YU3 Arachis hypogaea HOM05D005095 ORTHO05D006156 2.0e-143 512.7 303 77.2
arahy.Tifrunner.gnm1.ann1.ARK388 Arachis hypogaea HOM05D005095 ORTHO05D006156 2.0e-143 512.7 303 77.2
CANSAT51G0008 Cannabis sativa HOM05D005095 ORTHO05D006156 3.4e-143 511.9 307 75.6
CANSAT51G0010 Cannabis sativa HOM05D005095 ORTHO05D006156 3.4e-143 511.9 307 75.6
CANSAT51G0015 Cannabis sativa HOM05D005095 ORTHO05D006156 3.4e-143 511.9 307 75.6
Dinv21237 Davidia involucrata HOM05D005095 ORTHO05D006156 7.6e-143 510.8 311 75.2
MD12G1020700 Malus domestica HOM05D005095 ORTHO05D006156 1.7e-142 509.6 307 75.2
QL07p039953 Quercus lobata HOM05D005095 ORTHO05D006156 4.9e-142 508.1 307 76.5
Prupe.7G115300 Prunus persica HOM05D005095 ORTHO05D006156 7.1e-141 504.2 311 72.0
RcHm_v2.0_Chr3g0472431 Rosa chinensis HOM05D005095 ORTHO05D006156 7.9e-140 500.7 308 74.4
CSS0041742 Camellia sinensis var. sinensis HOM05D005095 ORTHO05D006156 5.1e-139 498.0 305 74.8
FAN14G2314 Fragaria x ananassa HOM05D005095 ORTHO05D006156 2.5e-138 495.7 308 75.0
Atru.chr8.1610 Acer truncatum HOM05D005095 ORTHO05D006156 3.3e-138 495.4 308 72.7
AUR62033539 Chenopodium quinoa HOM05D005095 ORTHO05D006156 5.6e-138 494.6 304 74.0
CiPaw.10G006700 Carya illinoinensis HOM05D005095 ORTHO05D006156 1.6e-137 493.0 307 73.6
CsaV3_3G036990 Cucumis sativus L. HOM05D005095 ORTHO05D006156 6.2e-137 491.1 311 71.1
FAN09G4215 Fragaria x ananassa HOM05D005095 ORTHO05D006156 8.1e-137 490.7 308 75.0
Manes.08G022501 Manihot esculenta HOM05D005095 ORTHO05D006156 1.4e-136 490.0 307 71.0
Peaxi162Scf00820g00056 Petunia axillaris HOM05D005095 ORTHO05D006156 1.4e-136 490.0 312 70.2
Sopen09g003900 Solanum pennellii HOM05D005095 ORTHO05D006156 1.4e-136 490.0 307 71.7
Sed0002679 Sechium edule HOM05D005095 ORTHO05D006156 1.8e-136 489.6 300 73.3
Rhsim03G0078800 Rhododendron simsii HOM05D005095 ORTHO05D006156 2.4e-136 489.2 308 73.1
Lj2A132T56 Lonicera japonica HOM05D005095 ORTHO05D006156 5.3e-136 488.0 302 73.2
Potri.002G156500 Populus trichocarpa HOM05D005095 ORTHO05D006156 5.3e-136 488.0 307 70.7
MELO3C009446.2 Cucumis melo HOM05D005095 ORTHO05D006156 6.9e-136 487.6 300 72.3
RcHm_v2.0_Chr3g0472441 Rosa chinensis HOM05D005095 ORTHO05D006156 6.9e-136 487.6 308 73.7
PGR004G0044 Punica granatum HOM05D005095 ORTHO05D006156 9.0e-136 487.3 306 71.2
Cfa016561 Carpinus fangiana HOM05D005095 ORTHO05D006156 2.0e-135 486.1 307 73.3
Nn6g35006 Nelumbo nucifera HOM05D005095 ORTHO05D006156 5.8e-135 484.6 302 73.8
PGSC0003DMG400002713 Solanum tuberosum HOM05D005095 ORTHO05D006156 5.8e-135 484.6 307 70.7
TWI74G0549 Tripterygium wilfordii HOM05D005095 ORTHO05D006156 7.6e-135 484.2 310 69.7
Ciclev10012289m.g Citrus clementina HOM05D005095 ORTHO05D006156 1.0e-134 483.8 304 71.7
Cpa.g.sc5.61 Carica papaya HOM05D005095 ORTHO05D006156 1.3e-134 483.4 307 70.7
ClCG10G019200 Citrullus lanatus HOM05D005095 ORTHO05D006156 2.9e-134 482.3 312 70.2
Lsat_1_v5_gn_2_22640 Lactuca sativa HOM05D005095 ORTHO05D006156 3.8e-134 481.9 300 73.0
Actinidia05448 Actinidia chinensis HOM05D005095 ORTHO05D006156 6.5e-134 481.1 308 71.1
ECA238G3195 Erigeron canadensis HOM05D005095 ORTHO05D006156 6.5e-134 481.1 305 72.1
Nitab4.5_0009950g0030 Nicotiana tabacum HOM05D005095 ORTHO05D006156 6.5e-134 481.1 307 70.4
Potri.002G156200 Populus trichocarpa HOM05D005095 ORTHO05D006156 1.1e-133 480.3 307 70.0
CAN.G824.21 Capsicum annuum HOM05D005095 ORTHO05D006156 1.9e-133 479.6 307 70.7
Sabra02G0124100 Salix brachista HOM05D005095 ORTHO05D006156 3.2e-133 478.8 332 65.7
THA.LOC104816365 Tarenaya hassleriana HOM05D005095 ORTHO05D006156 5.5e-133 478.0 303 70.3
MD14G1018000 Malus domestica HOM05D005095 ORTHO05D006156 7.9e-132 474.2 333 66.7
A05p39050 Brassica napus HOM05D005095 ORTHO05D006156 1.0e-131 473.8 304 70.4
BraA05t22697Z Brassica rapa HOM05D005095 ORTHO05D006156 1.0e-131 473.8 304 70.4
C05p58070 Brassica napus HOM05D005095 ORTHO05D006156 1.3e-131 473.4 302 70.5
HanXRQChr14g0432521 Helianthus annuus HOM05D005095 ORTHO05D006156 1.3e-131 473.4 300 71.7
Aa31LG3G2470 Aethionema arabicum HOM05D005095 ORTHO05D006156 2.3e-131 472.6 302 69.9
vmacro07384 Vaccinium macrocarpon HOM05D005095 ORTHO05D006156 2.3e-131 472.6 307 72.0
PSO384G1693 Papaver somniferum HOM05D005095 ORTHO05D006156 3.9e-131 471.9 309 68.9
Oeu018347.1 Olea europaea HOM05D005095 ORTHO05D006156 6.7e-131 471.1 305 70.8
Thhalv10021191m.g Eutrema salsugineum HOM05D005095 ORTHO05D006156 8.7e-131 470.7 302 68.5
PSO339G4586 Papaver somniferum HOM05D005095 ORTHO05D006156 8.7e-131 470.7 309 68.9
BolC5t34464H Brassica oleracea HOM05D005095 ORTHO05D006156 1.1e-130 470.3 302 69.9
MSTRG.19241 Avicennia marina HOM05D005095 ORTHO05D006156 1.5e-130 469.9 307 70.4
Thecc.05G083800 Theobroma cacao HOM05D005095 ORTHO05D006156 2.5e-130 469.2 302 70.9
TAR623G0504 Trochodendron aralioides HOM05D005095 ORTHO05D006156 7.4e-130 467.6 288 74.3
AL3G21250 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 9.6e-130 467.2 307 67.8
Sp3g08310 Schrenkiella parvula HOM05D005095 ORTHO05D006156 6.3e-129 464.5 302 68.9
CARHR084480 Cardamine hirsuta HOM05D005095 ORTHO05D006156 1.4e-128 463.4 302 67.9
DCAR_007746 Daucus carota HOM05D005095 ORTHO05D006156 3.1e-128 462.2 310 69.4
Manes.08G022601 Manihot esculenta HOM05D005095 ORTHO05D006156 4.1e-128 461.8 319 65.5
AT3G09970 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 5.3e-128 461.5 307 67.4
SalBow3G2853 Salvia bowleyana HOM05D005095 ORTHO05D006156 5.3e-128 461.5 299 71.2
Gohir.A04G065328 Gossypium hirsutum HOM05D005095 ORTHO05D006156 9.0e-128 460.7 302 69.5
COL.COLO4_29793 Corchorus olitorius HOM05D005095 ORTHO05D006156 1.5e-127 459.9 304 70.1
Aqoxy4G02848 Aquilegia oxysepala HOM05D005095 ORTHO05D006156 2.0e-127 459.5 302 68.5
SGA_v2.0_scaffold13G06769 Striga asiatica HOM05D005095 ORTHO05D006156 2.0e-127 459.5 303 70.6
Gorai.009G406100 Gossypium raimondii HOM05D005095 ORTHO05D006156 3.4e-127 458.8 302 69.9
Gohir.D04G102800 Gossypium hirsutum HOM05D005095 ORTHO05D006156 7.6e-127 457.6 302 69.9
TAR369G0658 Trochodendron aralioides HOM05D005095 ORTHO05D006156 7.6e-127 457.6 303 71.6
EL10Ac7g16967 Beta vulgaris HOM05D005095 ORTHO05D006156 1.3e-126 456.8 302 68.2
Duzib093G0109 Durio zibethinus HOM05D005095 ORTHO05D006156 1.3e-126 456.8 300 70.0
MBI01_g08270_MAGBIO Magnolia biondii HOM05D005095 ORTHO05D006156 1.7e-126 456.4 300 69.0
Thecc.05G084100 Theobroma cacao HOM05D005095 ORTHO05D006156 2.9e-126 455.7 302 68.9
Nitab4.5_0008581g0020 Nicotiana tabacum HOM05D005095 ORTHO05D006156 5.0e-126 454.9 307 68.7
CARHR084470 Cardamine hirsuta HOM05D005095 ORTHO05D006156 1.4e-125 453.4 302 67.9
Migut.J00973 Erythranthe guttata HOM05D005095 ORTHO05D006156 1.9e-122 443.0 308 65.6
Eucgr.A01531 Eucalyptus grandis HOM05D005095 ORTHO05D006156 1.9e-122 443.0 302 66.6
unitig_578.g15761 Utricularia gibba HOM05D000146 ORTHO05D006156 2.5e-122 442.6 305 66.2
Nitab4.5_0004686g0040 Nicotiana tabacum HOM05D005095 ORTHO05D006156 4.8e-121 438.3 351 59.5
AT3G09960 Arabidopsis thaliana HOM05D005095 ORTHO05D006156 8.2e-121 437.6 303 65.3
BcaC05g29724 Brassica carinata HOM05D005095 ORTHO05D006156 8.2e-121 437.6 302 65.6
Nitab4.5_0004686g0050 Nicotiana tabacum HOM05D005095 ORTHO05D006156 6.9e-120 434.5 307 66.1
Gorai.009G405800 Gossypium raimondii HOM05D005095 ORTHO05D006156 3.4e-119 432.2 307 66.4
Zm00001eb421860 Zea mays HOM05D005095 ORTHO05D006156 3.4e-119 432.2 304 63.2
C05p58080 Brassica napus HOM05D005095 ORTHO05D006156 1.0e-118 430.6 308 63.3
ATR0820G022 Amborella trichopoda HOM05D005095 ORTHO05D006156 3.6e-116 422.2 310 62.6
MELO3C009819.2 Cucumis melo HOM05D005095 ORTHO05D006156 6.1e-116 421.4 315 61.3
Ah.06g189990 Amaranthus hybridus HOM05D005095 ORTHO05D006156 1.8e-115 419.9 303 63.4
Os04g0409500 Oryza sativa ssp. japonica HOM05D005095 ORTHO05D006156 1.8e-115 419.9 300 60.3
CsaV3_3G040830 Cucumis sativus L. HOM05D005095 ORTHO05D006156 5.1e-115 418.3 316 61.4
Carub.0003s0907 Capsella rubella HOM05D005095 ORTHO05D006156 8.8e-115 417.5 291 67.4
DCAR_013371 Daucus carota HOM05D005095 ORTHO05D006156 5.3e-112 408.3 321 61.1
FvH4_6g18140 Fragaria vesca HOM05D005095 ORTHO05D006156 5.3e-112 408.3 251 75.3
ECA238G1993 Erigeron canadensis HOM05D005095 ORTHO05D006156 4.7e-108 395.2 307 62.5
Sc02g0001070 Simmondsia chinensis HOM05D005095 ORTHO05D006156 4.7e-108 395.2 262 70.2
SEGI_28091 Sequoiadendron giganteum HOM05D005095 ORTHO05D006156 6.1e-108 394.8 300 61.3
DCAR_013370 Daucus carota HOM05D005095 ORTHO05D006156 2.2e-105 386.3 305 61.3
Nn6g35008 Nelumbo nucifera HOM05D005095 ORTHO05D006156 1.1e-104 384.0 304 60.9
Ah.06g189980 Amaranthus hybridus HOM05D005095 ORTHO05D006156 3.5e-103 379.0 300 60.0
DCAR_013372 Daucus carota HOM05D005095 ORTHO05D006156 1.1e-101 374.0 302 60.3
AagrBONN_evm.TU.Sc2ySwM_117.2042 Anthoceros agrestis HOM05D005095 ORTHO05D006156 4.0e-99 365.5 298 57.7
Sed0010579 Sechium edule HOM05D005095 ORTHO05D006156 9.7e-98 360.9 255 63.1
BolC5t34465H Brassica oleracea HOM05D005095 ORTHO05D006156 1.8e-96 356.7 251 62.9
BcaC05g29723 Brassica carinata HOM05D005095 ORTHO05D006156 1.2e-95 354.0 307 54.4
Pp3c12_22780 Physcomitrium patens HOM05D005095 ORTHO05D006156 1.6e-95 353.6 301 53.8
SMO352G0026 Selaginella moellendorffii HOM05D005095 ORTHO05D006156 6.3e-89 331.6 303 52.8
Mapoly0100s0026 Marchantia polymorpha HOM05D005095 ORTHO05D006156 5.4e-88 328.6 301 52.8
Duzib093G0628 Durio zibethinus HOM05D005095 ORTHO05D006156 7.0e-88 328.2 323 52.9
CBR_g20302 Chara braunii HOM05D005095 ORTHO05D006156 3.5e-87 325.9 310 47.4
AL3G21240 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 1.9e-85 320.1 305 53.4
Solyc09g009170.4 Solanum lycopersicum HOM05D005095 ORTHO05D006156 1.4e-83 313.9 200 71.0
Gohir.D04G102500 Gossypium hirsutum HOM05D005095 ORTHO05D006156 8.8e-83 311.2 233 64.8
Gohir.A04G062650 Gossypium hirsutum HOM05D005095 ORTHO05D006156 2.2e-81 306.6 214 65.9
Medtr1g060850 Medicago truncatula HOM05D005095 ORTHO05D006156 3.7e-81 305.8 172 81.4
GSVIVG01033803001 Vitis vinifera HOM05D005095 ORTHO05D006156 2.4e-80 303.1 185 75.7
Cc06_g05420 Coffea canephora HOM05D005095 ORTHO05D006156 3.6e-76 289.3 185 71.4
CDE02G4719 Ceratophyllum demersum HOM05D005095 ORTHO05D006156 1.4e-67 260.8 177 66.1
BcaC05g29512 Brassica carinata HOM05D005095 ORTHO05D006156 2.0e-63 246.9 168 64.9
CAN.G397.3 Capsicum annuum HOM05D005095 ORTHO05D006156 3.0e-62 243.0 186 60.2
Glyma.10G067302 Glycine max HOM05D005095 ORTHO05D006156 6.6e-62 241.9 135 83.0
MD14G1017800 Malus domestica HOM05D005095 ORTHO05D006156 4.7e-52 209.1 143 67.1
Haze_19563 Corylus avellana HOM05D000103 ORTHO05D000049 1.2e-50 204.5 135 68.9
Sabra02G0123600 Salix brachista HOM05D005095 ORTHO05D006156 8.1e-44 181.8 172 52.3
AL7G30480 Arabidopsis lyrata HOM05D005095 ORTHO05D006156 6.9e-43 178.7 116 63.8
MCO16G241 Micromonas commoda HOM05D005095 ORTHO05D006156 1.2e-42 177.9 284 38.7
Hund04015 Selenicereus undatus HOM05D005095 ORTHO05D006156 1.1e-37 161.4 113 62.8
HPP92_007823 Vanilla planifolia HOM05D005095 ORTHO05D006156 7.3e-37 158.7 125 60.8
Zm00001eb312570 Zea mays HOM05D005095 ORTHO05D006156 1.6e-36 157.5 121 57.0
VMungo0720G1002 Vigna mungo HOM05D005095 ORTHO05D006156 4.0e-35 152.9 90 73.3
BcaB02g09662 Brassica carinata HOM05D005095 ORTHO05D006156 1.3e-28 131.3 159 44.0
Nn6g35009 Nelumbo nucifera HOM05D005095 ORTHO05D006156 6.9e-27 125.6 116 56.9
Prupe.3G199100 Prunus persica HOM05D005095 ORTHO05D006156 7.9e-23 112.1 63 76.2
TAR628G0764 Trochodendron aralioides HOM05D005095 ORTHO05D006156 1.6e-20 104.4 78 61.5
Zm00001eb198060 Zea mays HOM05D005095 ORTHO05D006156 4.9e-17 92.8 63 63.5
MD04G1094600 Malus domestica HOM05D005095 ORTHO05D245281 3.7e-12 76.6 69 56.5
Sabra14G0058200 Salix brachista HOM05D005095 ORTHO05D006156 5.9e-10 69.3 94 45.7
Pp3c4_390 Physcomitrium patens HOM05D005095 ORTHO05D006156 9.3e-08 62.0 50 50.0
BcaC06g33893 Brassica carinata HOM05D005095 ORTHO05D092937 8.7e-06 55.5 44 54.5


User provided reference genes

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