Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 8.1e-238 826.6 401 100.0
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 3.2e-194 681.8 399 83.0
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 2.0e-188 662.5 399 81.0
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 1.4e-186 656.4 400 78.5
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 6.9e-181 637.5 398 76.9
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 8.8e-176 620.5 396 76.8
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 3.7e-174 615.1 400 76.0
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 3.1e-173 612.1 387 75.7
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 1.2e-145 520.4 399 61.9
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 2.1e-145 519.6 383 64.8
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 8.0e-145 517.7 386 63.2
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.6e-143 512.7 392 62.5
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 2.9e-139 499.2 394 62.9
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 2.1e-137 493.0 388 61.1
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.0e-136 490.7 398 59.3
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 3.0e-136 489.2 398 59.3
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 8.9e-136 487.6 398 59.3
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.7e-134 483.4 398 59.0
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 1.1e-133 480.7 397 58.2
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 7.0e-133 478.0 392 57.9
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.2e-132 477.2 385 61.0
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.6e-132 476.9 405 58.0
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 6.6e-131 471.5 400 59.0
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 1.1e-130 470.7 399 56.1
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 2.8e-129 466.1 395 57.5
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 1.8e-128 463.4 380 60.3
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 4.4e-127 458.8 395 57.2
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 5.8e-127 458.4 381 59.6
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 9.8e-127 457.6 397 57.9
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.3e-126 457.2 397 57.4
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.7e-126 456.8 389 59.1
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 4.9e-126 455.3 394 57.9
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 6.4e-126 454.9 399 56.6
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 4.1e-125 452.2 393 56.5
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 4.1e-125 452.2 390 57.9
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 5.4e-125 451.8 385 58.7
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 1.2e-124 450.7 394 57.9
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 2.0e-124 449.9 390 57.2
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 2.7e-124 449.5 388 57.7
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 3.5e-124 449.1 396 56.8
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 1.0e-123 447.6 386 56.7
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 8.6e-123 444.5 388 57.2
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 1.1e-122 444.1 387 57.1
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 1.1e-122 444.1 387 57.1
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 1.1e-122 444.1 388 57.2
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 1.5e-122 443.7 388 54.4
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.5e-122 443.7 388 55.4
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 2.5e-122 443.0 401 56.1
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 2.5e-122 443.0 376 58.8
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 4.3e-122 442.2 401 54.1
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 9.5e-122 441.0 385 57.1
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 4.7e-121 438.7 389 55.3
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 4.7e-121 438.7 325 63.4
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 6.2e-121 438.3 400 55.8
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 8.1e-121 438.0 398 54.8
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.1e-120 437.6 391 54.0
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 1.4e-120 437.2 398 55.8
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 1.8e-120 436.8 433 51.0
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 1.8e-120 436.8 398 54.8
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.5e-119 433.7 371 58.5
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 2.2e-118 429.9 288 74.7
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 8.3e-118 427.9 397 53.4
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.9e-117 426.8 347 59.7
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 3.5e-116 422.5 409 53.1
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 3.5e-116 422.5 396 53.8
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 1.3e-115 420.6 333 61.0
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 1.7e-115 420.2 399 54.1
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.5e-114 416.4 394 53.0
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 9.5e-114 414.5 372 54.3
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 2.1e-113 413.3 396 53.5
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 2.8e-113 412.9 391 52.7
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 2.3e-112 409.8 281 71.2
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 3.4e-111 406.0 370 54.1
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 4.4e-111 405.6 396 53.5
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 1.7e-110 403.7 404 50.0
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 6.0e-108 395.2 303 64.0
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 7.8e-108 394.8 398 51.8
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.7e-107 393.7 390 51.3
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 1.1e-106 391.0 390 49.5
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 1.6e-105 387.1 395 51.4
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.6e-103 379.8 444 46.8
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 3.0e-99 366.3 228 72.8
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.0e-99 366.3 413 47.7
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.1e-98 364.4 374 51.6
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 9.0e-96 354.8 236 74.2
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 2.6e-95 353.2 317 56.8
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 3.2e-93 346.3 331 53.5
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 1.3e-91 340.9 325 55.1
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 3.0e-91 339.7 394 48.0
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 4.0e-88 329.3 242 69.0
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 1.2e-87 327.8 297 53.2
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 4.9e-86 322.4 391 43.5
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.1e-85 321.2 334 49.1
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 1.4e-85 320.9 415 44.1
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 9.3e-85 318.2 462 39.8
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 3.2e-77 293.1 385 42.6
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 1.2e-76 291.2 387 41.3
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 5.1e-75 285.8 311 48.2
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 9.0e-72 275.0 278 51.8
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 1.4e-61 241.1 142 76.1
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 7.9e-60 235.3 272 47.8
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.6e-58 230.3 160 63.8
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 5.7e-58 229.2 293 43.0
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 2.0e-55 220.7 287 42.2
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 1.7e-54 217.6 304 39.5
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 6.1e-52 209.1 128 71.1
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 2.4e-48 197.2 253 42.7
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 1.7e-46 191.0 102 79.4
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 5.0e-46 189.5 151 59.6
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 3.6e-44 183.3 122 62.3
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 1.0e-43 181.8 112 71.4
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 6.7e-43 179.1 111 72.1
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 2.2e-41 174.1 100 78.0
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 2.7e-36 157.1 188 42.6
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 1.3e-30 138.3 83 73.5
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 9.5e-29 132.1 131 54.2
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 3.0e-27 127.1 119 52.9
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 2.7e-23 114.0 68 76.5
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 7.8e-23 112.5 102 51.0
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 7.8e-23 112.5 102 51.0
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 4.3e-21 106.7 81 56.8
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 1.2e-18 98.6 60 70.0
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 7.5e-18 95.9 51 74.5
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 8.3e-17 92.4 58 67.2
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 4.1e-16 90.1 214 28.5
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 9.2e-16 89.0 50 74.0
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 1.2e-15 88.6 50 72.0
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.3e-14 85.1 91 44.0
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 7.3e-13 79.3 79 53.2
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 4.0e-11 73.6 244 26.2
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 5.2e-11 73.2 176 31.8
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 5.2e-11 73.2 176 31.8
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 2.0e-07 61.2 147 30.6
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 7.8e-07 59.3 72 47.2
Medtr1g102140 Medicago truncatula HOM05D005922 ORTHO05D006934 1.7e-06 58.2 61 55.7
Zm00001eb371330 Zea mays HOM05D005922 ORTHO05D006934 3.9e-06 57.0 41 53.7
MCO06G046 Micromonas commoda HOM05D005922 ORTHO05D006934 5.0e-06 56.6 84 35.7


User provided reference genes

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