Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.3e-119 432.2 213 100.0
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 1.2e-86 323.6 210 75.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 8.7e-82 307.4 193 77.2
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 2.8e-80 302.4 215 69.8
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 6.5e-77 291.2 194 75.3
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 7.4e-73 277.7 216 64.8
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 3.7e-72 275.4 212 66.5
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 2.4e-71 272.7 212 64.2
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 9.0e-71 270.8 212 65.1
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 4.6e-67 258.5 231 58.0
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 2.0e-65 253.1 219 56.6
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 4.8e-64 248.4 249 53.0
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 8.2e-64 247.7 209 56.0
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.5e-62 243.4 218 53.2
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 2.0e-62 243.0 219 54.8
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 2.6e-62 242.7 217 56.2
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 2.6e-62 242.7 222 55.0
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 2.6e-62 242.7 220 56.4
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 2.6e-62 242.7 209 55.5
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.0e-61 240.7 216 53.2
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 1.7e-61 240.0 217 55.3
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 8.5e-61 237.7 218 52.8
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.1e-60 237.3 221 54.3
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 4.2e-60 235.3 214 54.2
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 2.1e-59 233.0 210 52.9
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.4e-58 230.3 218 51.8
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.4e-58 230.3 217 50.7
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.6e-57 226.1 210 51.9
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 2.8e-56 222.6 216 51.4
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 2.8e-56 222.6 222 50.9
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.7e-56 222.2 194 54.1
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.1e-55 220.7 206 51.9
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 1.1e-55 220.7 208 53.8
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.4e-55 220.3 210 51.4
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 1.6e-54 216.9 214 48.6
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 2.0e-54 216.5 207 51.2
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 4.5e-54 215.3 208 51.4
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 1.3e-53 213.8 210 51.4
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 2.2e-53 213.0 187 50.8
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.9e-53 212.6 217 48.4
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 3.8e-53 212.2 207 48.8
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 6.5e-53 211.5 261 43.3
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 8.5e-53 211.1 226 45.1
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 8.5e-53 211.1 216 49.1
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.9e-52 209.9 207 47.8
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 2.5e-52 209.5 199 51.8
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 9.4e-52 207.6 214 48.1
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 1.2e-51 207.2 216 49.1
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 2.1e-51 206.5 196 49.5
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 2.7e-51 206.1 213 46.9
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 3.6e-51 205.7 212 47.6
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 6.1e-51 204.9 209 48.8
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 6.1e-51 204.9 204 49.0
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 1.0e-50 204.1 203 45.8
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.0e-50 204.1 189 52.9
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 1.0e-50 204.1 195 51.8
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 1.4e-50 203.8 207 45.9
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.8e-50 203.4 204 49.5
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.8e-50 203.4 201 49.8
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.3e-50 203.0 204 50.5
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.0e-50 202.6 212 48.1
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 5.2e-50 201.8 195 51.8
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 8.8e-50 201.1 214 46.7
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 8.8e-50 201.1 191 48.2
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.1e-49 200.7 223 48.0
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 1.1e-49 200.7 196 51.0
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.5e-49 200.3 208 49.0
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 2.0e-49 199.9 206 46.6
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.6e-49 199.5 207 47.8
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 2.6e-49 199.5 212 44.8
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 2.6e-49 199.5 207 45.9
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 4.4e-49 198.7 204 48.5
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 7.5e-49 198.0 205 48.3
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 7.5e-49 198.0 206 46.6
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.3e-48 197.2 195 48.2
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.7e-48 196.8 207 48.8
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.8e-48 196.1 226 46.0
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 2.8e-48 196.1 211 46.0
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 4.8e-48 195.3 209 45.9
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 4.8e-48 195.3 193 48.2
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 8.2e-48 194.5 219 43.4
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-47 194.1 207 47.8
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 1.1e-47 194.1 200 48.5
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 1.8e-47 193.4 207 47.8
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 1.8e-47 193.4 207 47.8
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.8e-47 193.4 217 43.3
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 2.4e-47 193.0 199 46.2
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.1e-47 192.2 205 45.4
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.1e-47 192.2 226 46.0
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 4.1e-47 192.2 217 42.9
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 4.1e-47 192.2 217 43.3
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 4.1e-47 192.2 206 46.1
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 5.3e-47 191.8 217 46.1
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 5.3e-47 191.8 225 43.1
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 5.3e-47 191.8 212 44.3
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 7.0e-47 191.4 203 46.3
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.0e-46 189.9 204 45.6
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 3.5e-46 189.1 207 46.9
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 3.5e-46 189.1 208 47.6
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 5.9e-46 188.3 208 46.2
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 7.7e-46 188.0 224 45.1
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.0e-45 187.6 199 47.2
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 1.0e-45 187.6 206 45.6
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 1.0e-45 187.6 207 46.9
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.7e-45 186.8 211 46.0
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.8e-45 185.7 201 44.8
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 3.8e-45 185.7 215 45.6
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 6.5e-45 184.9 206 44.2
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 6.5e-45 184.9 212 44.3
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 8.5e-45 184.5 207 47.3
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 8.5e-45 184.5 207 47.3
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 8.5e-45 184.5 200 46.0
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 2.5e-44 183.0 212 48.1
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 7.2e-44 181.4 207 45.9
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 9.4e-44 181.0 177 50.3
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.4e-44 181.0 233 41.2
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 3.6e-43 179.1 233 40.8
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.7e-43 178.7 207 46.9
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 6.1e-43 178.3 218 43.6
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 2.3e-42 176.4 213 46.0
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.0e-42 176.0 207 40.1
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 6.8e-42 174.9 212 45.8
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 8.8e-42 174.5 213 45.5
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 1.2e-41 174.1 203 43.8
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.5e-41 173.7 200 44.0
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 2.6e-41 172.9 203 43.3
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 2.6e-41 172.9 139 56.8
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 3.4e-41 172.6 203 43.3
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 4.4e-41 172.2 221 41.2
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 4.4e-41 172.2 212 42.5
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 7.5e-41 171.4 212 41.5
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 4.8e-40 168.7 212 41.5
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 6.3e-40 168.3 182 46.7
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 6.3e-40 168.3 193 44.6
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.1e-39 167.5 210 41.9
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 1.4e-39 167.2 205 43.4
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 4.1e-39 165.6 212 44.8
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.1e-39 165.6 194 43.8
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 3.5e-38 162.5 212 44.3
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 3.5e-38 162.5 217 36.9
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 1.1e-36 157.5 139 51.8
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 1.8e-34 150.2 136 50.0
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.5e-33 147.1 224 38.4
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 5.7e-33 145.2 199 43.7
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 7.5e-33 144.8 190 42.6
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.3e-32 144.1 181 37.0
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 8.3e-32 141.4 200 40.5
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.7e-30 136.3 187 36.9
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 3.8e-29 132.5 201 37.3
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 3.8e-29 132.5 254 31.9
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.9e-28 130.2 200 38.0
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.9e-28 130.2 200 38.0
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.3e-28 129.0 134 44.0
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.2e-27 127.5 139 44.6
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 3.6e-27 125.9 159 43.4
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 2.0e-25 120.2 200 35.5
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.4e-23 114.0 164 38.4
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 1.8e-23 113.6 201 34.8
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 1.3e-21 107.5 132 40.9
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 2.5e-20 103.2 132 40.2
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 3.6e-19 99.4 172 34.9
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 3.6e-19 99.4 107 45.8
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.5e-12 76.6 65 55.4
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 3.3e-12 76.3 71 50.7
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 7.3e-12 75.1 63 54.0
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.1e-11 73.6 158 30.4
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 7.5e-09 65.1 103 36.9
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 9.8e-09 64.7 61 44.3
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 9.8e-09 64.7 69 40.6
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 3.2e-07 59.7 69 39.1
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 7.1e-07 58.5 103 35.9
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.6e-06 57.4 61 39.3


User provided reference genes

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