Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.5e-53 212.6 108 100.0
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.8e-51 205.7 108 96.3
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.8e-36 155.2 115 74.8
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.7e-36 154.8 115 74.8
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 8.5e-33 143.7 111 71.2
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.1e-32 143.3 116 71.6
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 4.6e-31 137.9 108 70.4
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 2.3e-30 135.6 115 67.0
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.7e-28 129.4 110 68.2
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 2.2e-28 129.0 115 65.2
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 2.8e-28 128.6 109 67.9
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.8e-28 128.6 115 64.3
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 6.3e-28 127.5 115 65.2
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.4e-27 125.6 112 62.5
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 3.1e-27 125.2 114 59.6
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 4.1e-27 124.8 109 61.5
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.3e-27 124.4 111 60.4
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 6.9e-27 124.0 112 60.7
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 9.1e-27 123.6 114 61.4
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.2e-26 123.2 116 60.3
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 2.0e-26 122.5 110 60.9
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 2.0e-26 122.5 103 65.0
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 2.0e-26 122.5 109 60.6
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.6e-26 122.1 108 63.0
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.6e-26 122.1 108 64.8
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 3.4e-26 121.7 116 59.5
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 4.5e-26 121.3 101 69.3
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 5.9e-26 120.9 116 58.6
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 5.9e-26 120.9 110 60.0
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.7e-26 120.6 105 63.8
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.7e-26 120.6 105 63.8
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.0e-25 120.2 116 60.3
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 1.3e-25 119.8 104 62.5
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.2e-25 119.0 105 64.8
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.9e-25 118.6 114 58.8
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 2.9e-25 118.6 116 57.8
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.8e-25 118.2 115 62.6
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.8e-25 118.2 104 64.4
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.1e-24 116.7 109 60.6
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.9e-24 115.9 109 61.5
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.9e-24 115.9 115 58.3
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.5e-24 115.5 110 58.2
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.5e-24 115.5 103 64.1
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.5e-24 115.5 103 63.1
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.2e-24 115.2 107 59.8
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.2e-24 115.2 107 59.8
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 4.2e-24 114.8 116 56.9
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 4.2e-24 114.8 109 60.6
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 4.2e-24 114.8 103 61.2
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 5.5e-24 114.4 104 59.6
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 5.5e-24 114.4 113 61.1
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 5.5e-24 114.4 113 61.1
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 5.5e-24 114.4 110 58.2
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 5.5e-24 114.4 110 58.2
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.2e-24 114.0 110 60.0
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 7.2e-24 114.0 114 57.0
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 7.2e-24 114.0 116 55.2
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.2e-23 113.2 110 58.2
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.6e-23 112.8 104 59.6
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.1e-23 112.5 109 60.6
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 2.1e-23 112.5 109 57.8
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 2.1e-23 112.5 110 57.3
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.7e-23 112.1 109 60.6
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.7e-23 112.1 109 59.6
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 2.7e-23 112.1 112 57.1
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 4.7e-23 111.3 115 56.5
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 7.9e-23 110.5 104 60.6
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.0e-22 110.2 113 55.8
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.8e-22 109.4 113 56.6
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-22 109.4 104 58.7
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-22 109.4 104 58.7
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-22 109.4 104 58.7
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 3.0e-22 108.6 116 55.2
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 3.0e-22 108.6 99 65.7
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 3.9e-22 108.2 114 54.4
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 3.9e-22 108.2 104 58.7
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.9e-22 108.2 104 58.7
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 5.1e-22 107.8 106 58.5
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 5.1e-22 107.8 105 55.2
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 5.1e-22 107.8 115 53.9
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 6.7e-22 107.5 112 57.1
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 6.7e-22 107.5 109 59.6
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 8.8e-22 107.1 115 53.0
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.1e-21 106.7 104 58.7
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.6e-21 105.5 109 54.1
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 3.3e-21 105.1 109 56.9
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 3.3e-21 105.1 109 51.4
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.4e-21 104.8 109 58.7
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 5.7e-21 104.4 105 58.1
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 5.7e-21 104.4 115 51.3
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 5.7e-21 104.4 115 53.0
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.7e-21 104.4 98 58.2
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 5.7e-21 104.4 110 58.2
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 5.7e-21 104.4 99 57.6
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 7.4e-21 104.0 111 54.1
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 7.4e-21 104.0 105 58.1
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 7.4e-21 104.0 100 60.0
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 9.7e-21 103.6 113 56.6
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 9.7e-21 103.6 110 56.4
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.3e-20 103.2 106 57.5
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 2.2e-20 102.4 113 50.4
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 6.3e-20 100.9 110 53.6
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 8.2e-20 100.5 115 50.4
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 8.2e-20 100.5 110 56.4
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.1e-19 100.1 106 50.0
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.1e-19 100.1 112 50.0
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.4e-19 99.8 107 53.3
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.8e-19 99.4 112 50.0
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.8e-19 99.4 111 51.4
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.8e-19 99.4 112 50.0
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.8e-19 99.4 112 50.0
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.8e-19 99.4 111 51.4
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 3.1e-19 98.6 114 51.8
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 5.3e-19 97.8 112 50.0
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 3.4e-18 95.1 105 52.4
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 5.9e-18 94.4 92 55.4
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.7e-17 92.8 101 48.5
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.7e-17 92.8 118 50.8
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.2e-17 92.4 109 45.9
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.9e-17 92.0 110 49.1
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.9e-17 92.0 106 50.9
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.9e-17 92.0 106 50.9
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 4.2e-16 88.2 82 61.0
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 5.5e-16 87.8 96 52.1
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 7.2e-16 87.4 102 50.0
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 7.2e-16 87.4 90 54.4
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 3.6e-15 85.1 56 75.0
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.0e-14 83.6 116 42.2
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.3e-14 82.4 107 46.7
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.0e-14 82.0 97 52.6
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 6.7e-14 80.9 104 46.2
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 6.7e-14 80.9 110 46.4
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.0e-13 79.3 97 53.6
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 3.3e-13 78.6 102 47.1
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 4.4e-13 78.2 102 46.1
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 5.7e-13 77.8 110 44.5
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.4e-13 77.4 87 54.0
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.3e-12 76.6 105 42.9
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.3e-12 76.6 102 45.1
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.3e-12 76.6 103 45.6
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 1.7e-12 76.3 107 43.9
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.7e-12 76.3 107 40.2
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 2.2e-12 75.9 105 44.8
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 2.8e-12 75.5 57 63.2
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 4.8e-12 74.7 56 66.1
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 4.8e-12 74.7 88 40.9
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.4e-11 73.2 60 61.7
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 1.2e-10 70.1 57 61.4
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.0e-10 69.3 66 48.5
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 2.6e-10 68.9 98 44.9
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.3e-09 66.6 51 66.7
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 2.5e-08 62.4 88 42.0
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.2e-08 62.0 40 72.5
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 7.2e-08 60.8 112 36.6
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 2.1e-07 59.3 108 35.2
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 6.1e-07 57.8 53 62.3
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.8e-06 56.2 86 40.7
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.0e-06 55.1 60 50.0


User provided reference genes

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