Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 7.5e-144 513.8 259 100.0
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.3e-119 433.3 274 83.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.9e-119 432.2 271 83.8
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 2.4e-118 429.1 275 83.3
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 4.6e-117 424.9 274 81.4
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.3e-116 422.5 274 81.4
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 4.3e-115 418.3 281 80.1
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 2.1e-114 416.0 274 81.0
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 2.3e-113 412.5 275 79.6
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 4.0e-113 411.8 274 79.6
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.7e-111 406.4 277 79.1
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 2.9e-111 405.6 275 78.5
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 1.3e-108 396.7 274 76.3
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 5.1e-108 394.8 274 75.2
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 6.6e-108 394.4 274 77.4
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 2.1e-106 389.4 275 73.8
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 2.1e-106 389.4 275 75.6
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 6.2e-106 387.9 275 74.5
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.4e-105 386.7 275 74.5
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 4.0e-105 385.2 275 74.5
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 5.2e-105 384.8 275 74.2
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 6.8e-105 384.4 275 74.9
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.5e-104 383.3 276 74.6
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.6e-104 382.5 275 74.5
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 7.5e-104 380.9 275 74.5
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 7.5e-104 380.9 275 73.5
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 4.9e-103 378.3 275 72.4
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.4e-103 377.9 275 73.1
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 3.2e-102 375.6 276 74.3
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 5.4e-102 374.8 275 73.8
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 7.1e-102 374.4 275 73.1
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 9.2e-102 374.0 275 72.7
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.6e-101 373.2 267 73.4
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.1e-101 372.9 270 73.7
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 3.5e-101 372.1 327 64.5
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 3.5e-101 372.1 275 72.4
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 1.0e-100 370.5 275 74.2
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.3e-100 370.2 275 73.1
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.7e-100 369.8 275 70.9
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.3e-100 369.4 272 72.1
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.3e-100 369.4 272 72.1
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.9e-100 368.6 272 71.7
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 6.6e-100 367.9 272 71.7
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 8.6e-100 367.5 275 72.0
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 1.9e-99 366.3 275 72.4
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.9e-99 366.3 272 72.1
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.6e-99 364.8 272 71.0
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 7.3e-99 364.4 273 72.5
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 2.8e-98 362.5 275 70.2
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 3.6e-98 362.1 275 70.5
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 3.6e-98 362.1 277 73.6
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.7e-98 361.7 275 71.6
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.1e-97 360.5 267 71.2
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-97 360.5 275 70.5
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-97 360.5 275 70.5
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.1e-97 360.5 275 72.0
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.1e-97 360.5 283 71.0
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.1e-97 359.0 275 69.8
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 4.0e-97 358.6 275 69.1
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 4.0e-97 358.6 272 71.7
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 5.2e-97 358.2 275 69.8
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 5.2e-97 358.2 275 69.1
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 6.8e-97 357.8 252 73.4
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.8e-97 357.8 274 70.1
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.2e-96 357.1 275 71.6
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.2e-96 357.1 274 70.1
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.5e-96 356.7 276 70.7
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.5e-96 356.7 263 74.1
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 2.6e-96 355.9 275 70.2
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 7.6e-96 354.4 277 67.9
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.3e-95 353.6 275 70.9
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.3e-95 353.6 274 70.1
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 1.7e-95 353.2 323 62.5
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.2e-95 352.8 272 69.9
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 8.4e-95 350.9 276 71.7
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.4e-94 350.1 276 71.4
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 4.2e-94 348.6 272 69.9
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 7.1e-94 347.8 272 69.9
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 9.2e-94 347.4 269 70.6
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 3.5e-93 345.5 275 68.4
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.6e-93 345.1 258 71.3
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 6.0e-93 344.7 275 67.6
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.0e-92 344.0 302 64.6
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.3e-92 342.8 293 65.9
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 2.3e-92 342.8 269 68.8
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 3.0e-92 342.4 275 67.6
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.0e-92 342.4 272 68.8
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.1e-91 340.5 275 67.3
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.5e-91 340.1 276 67.0
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.9e-91 339.7 265 70.2
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 3.6e-90 335.5 262 68.7
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.8e-89 333.2 269 67.3
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 4.0e-89 332.0 276 65.2
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 5.3e-89 331.6 259 68.3
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.5e-88 330.1 258 69.0
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.5e-88 330.1 273 66.3
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 3.4e-88 328.9 316 60.1
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.4e-88 328.9 272 66.2
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 1.6e-85 320.1 278 64.0
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.6e-85 318.5 270 65.9
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 6.0e-85 318.2 288 62.5
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 6.0e-85 318.2 258 68.2
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.3e-84 317.0 273 63.7
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 2.3e-84 316.2 292 64.7
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 1.1e-83 313.9 267 64.4
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 1.5e-83 313.5 267 65.5
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.3e-83 312.4 273 63.0
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.6e-82 308.9 276 62.0
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 6.2e-82 308.1 268 63.8
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 6.2e-82 308.1 276 61.6
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.1e-81 305.8 263 63.1
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 3.1e-81 305.8 263 63.1
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 7.6e-80 301.2 264 63.6
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.3e-79 300.4 262 63.7
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 4.2e-78 295.4 273 61.9
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 7.1e-78 294.7 265 61.5
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.7e-77 292.7 270 61.9
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 3.5e-77 292.4 270 60.7
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 6.0e-77 291.6 270 61.1
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 6.0e-77 291.6 270 60.7
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.3e-76 290.4 270 61.1
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.8e-76 290.0 269 60.2
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 3.0e-76 289.3 270 60.7
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.9e-76 288.9 235 69.8
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 5.1e-76 288.5 270 61.9
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 6.7e-76 288.1 270 60.4
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 6.7e-76 288.1 270 60.4
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 8.7e-76 287.7 270 60.4
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 1.5e-75 287.0 267 61.8
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 2.5e-75 286.2 270 60.0
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 9.6e-75 284.3 270 59.6
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 1.3e-74 283.9 265 60.8
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.8e-74 282.7 269 60.6
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 6.2e-74 281.6 270 60.0
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 8.1e-74 281.2 242 64.5
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.8e-73 280.0 272 60.3
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 9.0e-73 277.7 261 60.2
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.5e-72 276.9 289 56.4
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.1e-69 266.5 272 58.5
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.1e-67 260.8 270 55.9
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.5e-67 260.4 274 56.9
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 2.8e-66 256.1 214 68.7
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.8e-65 253.4 207 68.6
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.8e-65 253.4 270 54.4
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 4.5e-64 248.8 274 54.7
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 4.2e-62 242.3 271 54.2
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 9.3e-62 241.1 270 53.0
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.3e-62 241.1 189 67.2
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 1.6e-61 240.4 206 66.5
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 4.6e-61 238.8 249 58.6
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 8.5e-55 218.0 199 62.8
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.7e-53 213.0 137 81.0
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.7e-42 177.2 257 43.6
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.1e-38 164.5 143 64.3
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 9.1e-33 144.8 110 67.3
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 3.6e-29 132.9 212 43.4
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 2.2e-26 123.6 150 51.3
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.2e-22 109.8 93 62.4
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 5.5e-22 109.0 257 33.9
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-17 94.4 139 42.4
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.1e-17 92.8 92 53.3
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.6e-16 90.9 52 90.4
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 5.5e-14 82.4 130 45.4
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 4.7e-13 79.3 52 75.0
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 6.8e-12 75.5 117 36.8
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.2e-10 70.5 41 78.0
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.3e-10 68.9 40 82.5
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 8.3e-10 68.6 41 75.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 3.5e-08 63.2 147 34.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 4.5e-08 62.8 43 65.1
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 1.1e-06 58.2 30 93.3
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.5e-06 57.8 72 37.5
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 7.3e-06 55.5 127 33.1


User provided reference genes

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