Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 0.0e+00 2106.6 1087 100.0
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 0.0e+00 1630.9 1098 80.4
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 0.0e+00 1614.4 1094 80.3
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 0.0e+00 1600.1 1097 79.4
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 0.0e+00 1301.2 1103 67.2
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 0.0e+00 1287.7 1108 66.7
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 0.0e+00 1244.2 1108 64.7
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 0.0e+00 1243.0 1106 64.5
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 0.0e+00 1239.2 1108 64.5
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 0.0e+00 1197.6 1113 62.6
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 0.0e+00 1124.0 1119 59.9
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 0.0e+00 1100.1 1142 60.2
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 1.8e-263 913.3 1114 52.7
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 6.2e-208 728.8 1124 45.8
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 2.4e-204 716.8 1106 44.9
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.2e-203 714.5 1125 44.8
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 9.6e-201 704.9 1142 44.5
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.3e-194 684.5 1111 44.6
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 3.0e-178 630.2 1117 43.0
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 1.3e-176 624.8 1142 41.5
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 3.1e-175 620.2 1138 43.4
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 6.9e-175 619.0 1138 43.3
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 7.6e-174 615.5 1128 42.0
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 2.2e-173 614.0 1127 41.2
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 2.2e-173 614.0 1129 41.2
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 8.4e-173 612.1 1122 42.0
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.5e-166 591.3 1151 40.1
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 9.7e-161 572.0 1134 40.0
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 2.8e-160 570.5 1117 41.5
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 5.5e-156 556.2 1110 40.1
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 3.9e-154 550.1 1127 39.6
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 5.7e-153 546.2 1101 39.6
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 1.1e-151 542.0 942 44.7
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 3.0e-146 523.9 1121 38.4
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 6.7e-146 522.7 1124 38.5
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 8.8e-146 522.3 1125 38.9
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.6e-145 520.8 1121 38.3
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 1.7e-144 518.1 1129 38.7
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 7.7e-142 509.2 801 47.2
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.1e-140 505.4 1001 40.1
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 7.2e-140 502.7 1124 37.7
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.1e-139 501.1 1120 37.8
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 3.6e-139 500.4 1129 39.2
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 8.8e-138 495.7 1126 38.4
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 9.8e-137 492.3 814 44.6
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 3.5e-134 483.8 1137 37.6
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 2.7e-131 474.2 1106 37.1
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 5.4e-127 459.9 1105 35.7
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 2.8e-123 447.6 1040 39.7
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 4.0e-122 443.7 1106 35.7
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 4.1e-119 433.7 1138 36.1
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 3.3e-116 424.1 1127 35.0
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 2.8e-115 421.0 1049 36.4
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 2.0e-110 404.8 1082 35.3
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 3.9e-109 400.6 1095 34.5
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 2.5e-108 397.9 1092 34.2
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 2.0e-105 388.3 1167 33.7
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 7.1e-103 379.8 1007 34.0
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 7.1e-103 379.8 1146 32.9
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 8.6e-101 372.9 1051 34.1
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.6e-97 359.8 1137 32.8
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 5.4e-95 353.6 1079 32.8
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 7.1e-95 353.2 835 37.1
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 2.3e-93 348.2 1132 32.4
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 7.3e-92 343.2 586 42.8
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 8.9e-90 336.3 999 33.6
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.9e-88 330.5 976 33.2
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 6.4e-88 330.1 310 60.0
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-73 282.7 1029 31.5
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 4.6e-70 270.8 1125 30.1
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 3.9e-69 267.7 811 34.2
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.4e-66 259.2 705 32.5
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 2.4e-66 258.5 1178 30.1
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 1.3e-59 236.1 709 33.3
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 2.2e-56 225.3 713 33.0
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 3.8e-56 224.6 1061 28.3
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 2.1e-54 218.8 319 49.5
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 7.9e-54 216.9 728 30.4
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.8e-53 215.7 749 29.6
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 9.1e-50 203.4 758 28.9
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 1.2e-49 203.0 595 33.4
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.0e-49 202.2 1117 28.7
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.9e-48 198.4 711 29.8
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 3.9e-45 188.0 789 31.1
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 1.5e-44 186.0 1097 27.9
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 3.1e-42 178.3 875 27.8
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.9e-42 177.2 367 38.1
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.0e-40 173.3 1050 27.8
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 1.7e-40 172.6 1097 26.6
Psat0s3352g0160 Pisum sativum HOM05D000529 ORTHO05D020973 1.8e-37 162.5 278 45.3
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 6.7e-37 160.6 389 34.2
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 7.4e-36 157.1 1088 26.0
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 2.2e-35 155.6 589 30.7
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 2.2e-35 155.6 762 29.5
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 1.6e-33 149.4 519 32.0
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.7e-33 147.1 434 34.3
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 1.9e-31 142.5 590 30.2
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 3.6e-30 138.3 525 29.0
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 1.0e-29 136.7 846 29.2
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 3.0e-29 135.2 532 31.0
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 6.7e-29 134.0 785 28.7
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.6e-25 122.9 348 36.2
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 2.0e-25 122.5 375 34.4
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.3e-24 119.8 402 33.8
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 5.5e-23 114.4 536 29.5
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 7.2e-23 114.0 796 29.0
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 3.6e-22 111.7 483 30.6
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 3.6e-22 111.7 500 31.0
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 3.6e-22 111.7 218 42.2
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 4.7e-22 111.3 489 30.9
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 6.1e-22 110.9 570 28.2
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 5.2e-21 107.8 807 27.0
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.8e-21 107.5 403 31.3
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 8.8e-21 107.1 546 29.1
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.3e-19 103.2 806 26.7
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 1.7e-19 102.8 136 44.9
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 1.8e-18 99.4 670 27.0
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 4.5e-17 94.7 372 31.2
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 6.5e-16 90.9 792 27.9
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 1.1e-15 90.1 417 30.2
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.4e-13 83.2 172 37.2
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 2.3e-13 82.4 799 25.7
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 1.2e-12 80.1 688 26.2
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 1.2e-12 80.1 125 39.2
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.2e-12 80.1 133 42.1
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.5e-12 79.7 799 26.3
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 2.0e-12 79.3 414 31.2
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.4e-12 78.6 229 36.2
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 5.7e-12 77.8 794 25.2
CsaV3_5G026070 Cucumis sativus L. HOM05D000283 ORTHO05D006673 9.8e-12 77.0 327 27.5
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 1.7e-11 76.3 310 31.9
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 4.1e-10 71.6 430 27.9
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 5.4e-10 71.2 182 36.3
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 3.5e-09 68.6 126 41.3
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 3.5e-09 68.6 126 42.1
PGSC0003DMG400011484 Solanum tuberosum HOM05D000283 ORTHO05D006673 7.8e-09 67.4 134 32.8
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.3e-08 66.6 188 36.7
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.3e-08 65.9 780 25.9
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-08 65.5 340 29.7
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 3.8e-08 65.1 620 27.3
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 2.5e-07 62.4 287 30.7
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 5.6e-07 61.2 92 43.5
Psat0ss3759g0400 Pisum sativum HOM05D000846 ORTHO05D001340 2.1e-06 59.3 32 90.6
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 3.6e-06 58.5 39 74.4


User provided reference genes

Program Settings