Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 3.7e-74 281.6 153 100.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 7.2e-70 267.3 153 93.5
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.8e-68 262.7 153 91.5
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 2.6e-67 258.8 154 92.2
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 2.0e-64 249.2 152 90.8
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 2.3e-60 235.7 153 85.0
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 3.0e-60 235.3 155 83.9
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 4.0e-60 235.0 153 85.0
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 1.1e-59 233.4 141 87.9
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.1e-59 233.4 157 84.1
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.4e-57 225.7 155 81.9
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 2.4e-57 225.7 155 81.9
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 2.4e-57 225.7 155 81.9
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 6.5e-55 217.6 155 76.8
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 6.5e-55 217.6 155 77.4
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.9e-54 216.1 151 77.5
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 4.2e-54 214.9 152 76.3
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 5.5e-54 214.5 152 74.3
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 5.5e-54 214.5 158 74.7
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 5.5e-54 214.5 140 79.3
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 5.5e-54 214.5 156 75.0
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 7.2e-54 214.2 141 78.7
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.1e-53 212.6 152 75.0
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 2.7e-53 212.2 141 78.0
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 4.7e-53 211.5 155 74.2
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 4.7e-53 211.5 141 78.7
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 4.7e-53 211.5 155 74.2
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 6.1e-53 211.1 147 75.5
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 6.1e-53 211.1 153 76.5
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 6.1e-53 211.1 140 76.4
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.4e-52 209.9 153 71.9
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.4e-52 209.9 146 75.3
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.4e-52 209.9 144 77.1
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.8e-52 209.5 153 74.5
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 2.3e-52 209.1 146 75.3
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 2.3e-52 209.1 146 75.3
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 4.0e-52 208.4 153 71.2
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-52 208.4 140 76.4
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 5.2e-52 208.0 158 72.2
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 6.8e-52 207.6 159 71.7
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 6.8e-52 207.6 146 74.7
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 6.8e-52 207.6 150 74.0
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-51 206.5 140 75.0
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.5e-51 206.5 158 72.2
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.0e-51 206.1 158 71.5
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 2.0e-51 206.1 154 72.1
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.0e-51 206.1 141 76.6
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 3.4e-51 205.3 138 78.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.4e-51 204.9 140 75.0
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 5.7e-51 204.5 140 74.3
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 9.8e-51 203.8 158 69.6
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 1.3e-50 203.4 150 70.0
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-50 203.4 140 73.6
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.7e-50 203.0 158 70.3
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.7e-50 203.0 141 75.9
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 2.2e-50 202.6 148 71.6
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 2.2e-50 202.6 147 70.7
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.8e-50 202.2 153 74.5
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.8e-50 202.2 158 70.9
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 3.7e-50 201.8 152 70.4
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.7e-50 201.8 157 69.4
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 4.8e-50 201.4 152 70.4
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 4.8e-50 201.4 187 64.2
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 6.3e-50 201.1 148 70.3
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.3e-50 201.1 140 72.1
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.3e-50 201.1 140 71.4
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.3e-50 201.1 140 72.1
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 6.3e-50 201.1 157 68.8
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 8.3e-50 200.7 145 73.1
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 1.1e-49 200.3 141 73.0
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 1.1e-49 200.3 141 73.0
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.4e-49 199.9 141 74.5
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.8e-49 199.5 152 69.7
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 2.4e-49 199.1 161 66.5
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-49 199.1 140 72.1
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 4.1e-49 198.4 152 68.4
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 4.1e-49 198.4 152 68.4
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 4.1e-49 198.4 158 69.6
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 5.4e-49 198.0 147 70.1
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 7.0e-49 197.6 139 74.1
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.2e-48 196.8 139 74.8
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 1.6e-48 196.4 152 68.4
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 1.6e-48 196.4 152 68.4
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.7e-48 195.7 141 72.3
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 3.5e-48 195.3 137 74.5
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 4.5e-48 194.9 152 67.8
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.5e-48 194.9 158 69.6
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.0e-47 193.7 147 68.7
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 1.0e-47 193.7 137 74.5
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.3e-47 193.4 147 68.0
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.3e-47 193.4 147 68.0
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 2.2e-47 192.6 151 67.5
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 3.8e-47 191.8 147 67.3
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 3.8e-47 191.8 141 70.9
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 3.8e-47 191.8 135 73.3
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 1.1e-46 190.3 148 66.9
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 9.4e-46 187.2 160 63.1
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 2.7e-45 185.7 193 57.0
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 8.0e-45 184.1 129 76.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-44 183.7 140 67.9
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.8e-44 183.0 140 67.1
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 3.0e-44 182.2 200 54.0
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 2.0e-43 179.5 139 68.3
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.6e-43 179.1 140 66.4
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 3.4e-43 178.7 131 74.8
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 3.4e-43 178.7 135 72.6
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 4.4e-43 178.3 124 75.0
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 4.4e-43 178.3 187 54.5
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.3e-42 176.8 163 62.0
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-42 176.8 114 79.8
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-42 176.8 114 79.8
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 2.2e-42 176.0 128 74.2
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.2e-42 176.0 226 50.0
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-42 176.0 114 79.8
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-42 175.6 114 79.8
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 8.3e-42 174.1 138 71.7
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-41 173.7 114 78.1
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.1e-41 173.7 222 50.0
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.4e-41 173.3 115 77.4
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-41 173.3 114 78.1
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.4e-41 173.3 147 65.3
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.8e-41 172.9 151 58.3
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.4e-41 172.6 131 69.5
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.4e-41 172.6 143 67.1
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 3.1e-41 172.2 114 78.1
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 4.1e-41 171.8 114 78.1
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.3e-39 166.8 128 70.3
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-39 166.4 113 75.2
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.7e-39 166.4 245 46.5
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.7e-39 166.4 153 57.5
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 5.0e-39 164.9 138 61.6
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 4.3e-38 161.8 141 56.0
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 7.3e-38 161.0 116 72.4
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 1.0e-36 157.1 140 56.4
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.0e-36 155.6 116 68.1
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.0e-36 155.6 116 68.1
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.6e-32 143.3 161 52.8
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 7.5e-27 124.4 90 73.3
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 8.3e-26 120.9 87 73.6
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.4e-25 120.2 103 65.0
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.2e-25 119.0 84 64.3
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 5.4e-25 118.2 200 40.5
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 9.2e-25 117.5 89 73.0
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.3e-23 113.6 143 41.3
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 3.0e-23 112.5 139 41.0
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 1.2e-21 107.1 136 49.3
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 3.1e-20 102.4 70 78.6
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 3.1e-20 102.4 70 78.6
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 5.2e-20 101.7 77 61.0
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 2.0e-19 99.8 70 75.7
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 8.3e-18 94.4 70 70.0
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 7.1e-17 91.3 64 76.6
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.5e-16 89.0 57 73.7
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 3.5e-16 89.0 145 33.1
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.6e-16 88.6 57 73.7
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 6.6e-15 84.7 56 71.4
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.9e-14 83.2 64 68.8
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 2.8e-13 79.3 48 77.1
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 3.1e-12 75.9 133 30.8
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.6e-11 71.2 60 65.0
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 2.2e-10 69.7 72 56.9
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.9e-10 68.6 60 63.3
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.1e-09 64.7 60 63.3
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.1e-09 64.7 60 63.3
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.7e-08 62.8 50 58.0


User provided reference genes

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