Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 9.1e-99 364.4 324 100.0
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 2.0e-82 310.1 330 81.5
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 2.5e-80 303.1 185 89.2
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 9.8e-77 291.2 185 87.6
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 3.5e-74 282.7 182 87.4
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 3.5e-74 282.7 183 88.0
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 7.8e-74 281.6 186 82.3
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 8.6e-73 278.1 187 86.1
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 2.5e-72 276.6 185 84.9
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 7.6e-69 265.0 186 80.1
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 3.7e-68 262.7 186 75.3
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 1.1e-67 261.2 186 79.0
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 1.6e-55 220.7 187 65.8
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 3.1e-54 216.5 178 71.9
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 9.0e-54 214.9 187 68.4
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 2.0e-53 213.8 187 63.6
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 3.4e-53 213.0 187 67.9
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 4.4e-53 212.6 187 60.4
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 5.8e-53 212.2 193 65.8
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 9.9e-53 211.5 186 59.1
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 2.2e-52 210.3 183 67.2
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 2.9e-52 209.9 187 68.4
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 2.9e-52 209.9 187 67.4
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 3.8e-52 209.5 179 70.9
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 3.8e-52 209.5 179 70.9
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 3.8e-52 209.5 179 70.9
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 6.4e-52 208.8 186 67.2
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 1.1e-51 208.0 173 70.5
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 1.4e-51 207.6 175 68.0
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 1.4e-51 207.6 182 66.5
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 1.4e-51 207.6 189 64.0
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 4.2e-51 206.1 190 65.8
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 5.4e-51 205.7 193 65.8
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 1.2e-50 204.5 179 62.0
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 1.2e-50 204.5 179 65.9
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 1.2e-50 204.5 183 67.8
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 2.1e-50 203.8 186 62.9
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 2.7e-50 203.4 189 64.6
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 3.5e-50 203.0 186 65.6
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 3.5e-50 203.0 182 67.0
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 4.6e-50 202.6 177 70.1
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 4.6e-50 202.6 181 65.7
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 4.6e-50 202.6 186 67.2
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 6.0e-50 202.2 145 69.7
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 7.8e-50 201.8 174 70.1
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 1.0e-49 201.4 183 65.0
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 1.7e-49 200.7 181 64.1
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 2.3e-49 200.3 177 66.1
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 3.0e-49 199.9 187 63.1
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 3.9e-49 199.5 180 65.6
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 5.1e-49 199.1 146 66.4
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 5.1e-49 199.1 186 63.4
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 5.1e-49 199.1 186 65.1
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 5.1e-49 199.1 177 65.5
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 5.1e-49 199.1 146 65.1
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 1.1e-48 198.0 138 69.6
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 1.5e-48 197.6 186 65.1
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.5e-48 197.6 182 67.6
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 2.5e-48 196.8 181 64.6
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 4.3e-48 196.1 184 65.8
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 4.3e-48 196.1 188 62.2
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 4.3e-48 196.1 185 61.1
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 5.6e-48 195.7 177 64.4
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 7.3e-48 195.3 173 64.7
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 7.3e-48 195.3 184 60.9
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 1.3e-47 194.5 175 67.4
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 1.6e-47 194.1 188 65.4
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.6e-47 194.1 184 64.7
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 1.6e-47 194.1 175 67.4
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.8e-47 193.4 187 61.5
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 6.2e-47 192.2 176 63.6
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 1.1e-46 191.4 177 65.0
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.4e-46 191.0 146 67.8
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 1.4e-46 191.0 180 64.4
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.8e-46 190.7 185 64.9
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 2.4e-46 190.3 181 63.5
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 5.3e-46 189.1 174 64.9
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 5.3e-46 189.1 187 61.0
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 6.9e-46 188.7 131 71.0
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 6.9e-46 188.7 178 65.7
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 6.9e-46 188.7 193 54.4
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 9.0e-46 188.3 178 65.7
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 1.2e-45 188.0 189 61.9
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 1.5e-45 187.6 180 57.8
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 2.0e-45 187.2 171 60.8
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 3.4e-45 186.4 187 61.5
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 3.4e-45 186.4 182 63.2
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 4.5e-45 186.0 180 63.9
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 5.8e-45 185.7 184 59.8
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 9.9e-45 184.9 179 61.5
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 1.3e-44 184.5 178 65.2
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 1.7e-44 184.1 177 64.4
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 2.2e-44 183.7 176 64.2
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 4.9e-44 182.6 176 63.6
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 8.4e-44 181.8 188 62.8
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 8.4e-44 181.8 177 62.1
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.1e-43 181.4 186 61.3
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 2.4e-43 180.3 175 59.4
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 2.4e-43 180.3 178 62.4
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 5.4e-43 179.1 172 65.1
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 5.4e-43 179.1 199 57.8
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 9.3e-43 178.3 185 62.2
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 9.3e-43 178.3 140 64.3
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 9.3e-43 178.3 186 59.1
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 2.7e-42 176.8 185 63.2
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 3.5e-42 176.4 185 63.2
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 3.5e-42 176.4 143 64.3
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 6.0e-42 175.6 171 60.8
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 1.0e-41 174.9 173 61.8
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 6.7e-41 172.2 175 62.3
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 1.5e-40 171.0 172 61.6
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 1.5e-40 171.0 172 61.6
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 1.5e-40 171.0 172 61.6
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 1.9e-40 170.6 173 59.5
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 3.3e-40 169.9 174 58.6
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 9.6e-40 168.3 174 56.9
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 1.3e-39 167.9 190 56.3
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 1.3e-39 167.9 145 60.0
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 3.1e-38 163.3 184 48.9
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 3.1e-38 163.3 179 58.7
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 5.3e-38 162.5 171 57.3
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 6.9e-38 162.2 175 58.9
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 6.9e-38 162.2 186 56.5
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 6.9e-38 162.2 186 56.5
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 5.8e-37 159.1 135 61.5
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 5.8e-37 159.1 99 78.8
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 2.5e-35 153.7 174 59.8
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 2.5e-35 153.7 174 59.8
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 2.5e-35 153.7 174 59.8
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 2.5e-35 153.7 191 54.5
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 1.6e-34 151.0 114 64.9
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 3.5e-34 149.8 151 52.3
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 7.9e-34 148.7 115 66.1
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 7.9e-34 148.7 135 57.8
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 1.5e-32 144.4 165 57.0
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 1.9e-32 144.1 132 57.6
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 5.7e-32 142.5 170 57.6
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 7.4e-32 142.1 132 56.8
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 1.3e-28 131.3 195 43.1
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.7e-28 131.0 186 50.0
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 2.9e-28 130.2 95 71.6
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 5.5e-27 125.9 188 49.5
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 1.6e-23 114.4 169 45.6
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 2.2e-23 114.0 89 64.0
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 2.8e-23 113.6 90 65.6
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 3.7e-23 113.2 137 56.9
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 9.0e-22 108.6 72 76.4
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 4.6e-18 96.3 186 42.5
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 7.9e-18 95.5 51 92.2
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 7.9e-18 95.5 51 92.2
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.0e-17 93.6 187 43.9
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 1.3e-15 88.2 114 52.6
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.2e-15 87.4 142 46.5
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.2e-13 81.6 184 35.9
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.5e-13 81.3 43 90.7
Cre09.g389652 Chlamydomonas reinhardtii HOM05D004676 ORTHO05D005661 3.1e-06 57.0 119 35.3


User provided reference genes

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