Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 6.1e-126 454.1 226 100.0
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 8.8e-40 167.9 211 54.0
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 5.3e-29 132.1 235 44.7
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.2e-28 131.0 265 41.9
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 5.9e-28 128.6 241 42.3
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.5e-26 124.0 206 44.7
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.7e-25 119.8 230 42.6
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.0e-23 113.6 263 36.1
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.4e-21 106.7 220 40.9
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.7e-19 100.5 260 35.4
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 2.9e-19 99.8 235 38.3
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 4.2e-18 95.9 247 33.2
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.6e-17 94.0 266 36.1
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.6e-17 94.0 261 36.0
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 3.6e-17 92.8 243 36.2
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.4e-16 90.9 237 35.4
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.8e-16 90.5 230 37.8
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.8e-16 90.5 158 44.3
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 8.8e-16 88.2 237 36.7
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 5.7e-15 85.5 221 36.7
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 5.7e-15 85.5 177 40.1
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 9.8e-15 84.7 236 36.4
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.3e-14 84.3 155 42.6
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.3e-14 84.3 265 33.6
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 3.7e-14 82.8 244 34.8
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 6.3e-14 82.0 272 32.0
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.1e-13 81.3 273 33.3
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.1e-13 81.3 225 36.0
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 2.4e-13 80.1 191 38.2
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.4e-13 80.1 226 35.4
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 7.0e-13 78.6 225 35.1
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 2.7e-12 76.6 172 39.0
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 4.5e-12 75.9 205 37.6
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.0e-11 74.7 160 41.2
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.0e-11 74.7 239 33.9
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.0e-11 74.7 148 42.6
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.3e-11 74.3 220 35.0
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.3e-11 74.3 220 35.0
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.3e-11 74.3 220 35.0
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.9e-11 73.2 226 35.4
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 8.5e-11 71.6 223 35.4
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 5.5e-10 68.9 249 33.3
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 7.2e-10 68.6 218 33.5
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 9.4e-10 68.2 231 32.0
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.2e-09 67.8 233 31.3
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.6e-09 67.4 153 37.3
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 4.7e-09 65.9 281 31.3
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 6.1e-09 65.5 223 30.5
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.0e-08 64.7 245 31.4
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.4e-08 64.3 166 36.7
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 6.8e-08 62.0 224 30.4
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 6.8e-08 62.0 291 28.5
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 4.4e-07 59.3 222 30.6
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 4.4e-07 59.3 139 39.6
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 5.7e-07 58.9 180 33.9
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 5.7e-07 58.9 218 31.7
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 7.5e-07 58.5 175 34.3
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 7.5e-07 58.5 229 28.8
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 9.8e-07 58.2 259 30.9
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 9.8e-07 58.2 169 33.1
TPR.G18805 Trifolium pratense HOM05D004123 ORTHO05D004768 1.3e-06 57.8 124 40.3
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.2e-06 57.0 175 33.7
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.2e-06 57.0 175 33.7
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 2.2e-06 57.0 222 31.5
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.7e-06 56.2 230 30.4
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.3e-06 55.5 217 30.9
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 6.3e-06 55.5 233 31.3


User provided reference genes

Program Settings