Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11155_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 2.7e-59 231.9 123 100.0
Ca_11158_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 2.7e-59 231.9 123 100.0
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 1.3e-42 176.4 127 74.8
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 2.8e-40 168.7 127 70.9
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 2.4e-39 165.6 127 70.9
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 4.9e-29 131.3 132 62.1
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 3.5e-27 125.2 128 59.4
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 2.3e-26 122.5 130 58.5
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 1.5e-25 119.8 136 56.6
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 1.5e-25 119.8 130 62.3
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 8.2e-24 114.0 133 55.6
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 1.0e-21 107.1 130 56.2
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 5.1e-18 94.7 129 46.5
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 2.8e-16 89.0 137 43.1
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 9.1e-15 84.0 141 40.4
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 1.2e-14 83.6 133 42.1
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 1.5e-14 83.2 132 44.7
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 7.7e-14 80.9 130 44.6
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 7.7e-14 80.9 130 44.6
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 1.0e-13 80.5 136 40.4
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 2.5e-12 75.9 133 42.1
Cfa007314 Carpinus fangiana HOM05D000615 ORTHO05D007195 3.2e-12 75.5 132 44.7
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 5.5e-12 74.7 131 42.0
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.2e-11 73.6 135 43.7
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 1.0e-10 70.5 143 39.2
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 1.4e-10 70.1 133 41.4
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 1.4e-10 70.1 135 36.3
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.4e-10 70.1 139 37.4
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 3.3e-09 65.5 140 36.4
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 5.7e-09 64.7 134 41.0
MELO3C014838.2 Cucumis melo HOM05D007617 ORTHO05D007195 5.7e-09 64.7 131 41.2
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 7.4e-09 64.3 124 39.5
Haze_14778 Corylus avellana HOM05D007617 ORTHO05D007195 7.4e-09 64.3 126 41.3
Nn4g22527 Nelumbo nucifera HOM05D007617 ORTHO05D007195 9.7e-09 63.9 139 41.7
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 1.3e-08 63.5 94 44.7
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 2.2e-08 62.8 132 38.6
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 2.2e-08 62.8 120 36.7
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 2.2e-08 62.8 132 40.2
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 2.2e-08 62.8 139 36.7
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 2.8e-08 62.4 146 35.6
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 3.7e-08 62.0 131 39.7
TAR622G0315 Trochodendron aralioides HOM05D007617 ORTHO05D007195 3.7e-08 62.0 139 38.1
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 4.8e-08 61.6 103 40.8
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 4.8e-08 61.6 103 40.8
Nn3g16639 Nelumbo nucifera HOM05D007617 ORTHO05D007195 8.2e-08 60.8 137 40.9
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 1.1e-07 60.5 148 34.5
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 1.4e-07 60.1 130 36.9
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 2.4e-07 59.3 130 36.9
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 2.4e-07 59.3 143 35.7
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 3.1e-07 58.9 130 36.9
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 3.1e-07 58.9 135 37.0
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 7.0e-07 57.8 132 36.4
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 9.1e-07 57.4 145 33.1
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 9.1e-07 57.4 139 36.7
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.2e-06 57.0 130 36.2
Manes.15G153500 Manihot esculenta HOM05D007617 ORTHO05D007195 1.2e-06 57.0 141 38.3
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 1.2e-06 57.0 102 41.2
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 1.5e-06 56.6 137 33.6
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 2.0e-06 56.2 65 50.8
Sed0015223 Sechium edule HOM05D007617 ORTHO05D007195 2.0e-06 56.2 131 38.9
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 2.6e-06 55.8 145 34.5
Migut.K00629 Erythranthe guttata HOM05D007617 ORTHO05D007195 3.4e-06 55.5 135 36.3
Sp5g13710 Schrenkiella parvula HOM05D010525 ORTHO05D007195 3.4e-06 55.5 137 31.4
A06p19360 Brassica napus HOM05D010525 ORTHO05D007195 4.5e-06 55.1 126 32.5
Nitab4.5_0000040g0620 Nicotiana tabacum HOM05D007617 ORTHO05D007195 4.5e-06 55.1 143 35.0


User provided reference genes

Program Settings