Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 5.0e-128 461.1 225 100.0
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 4.7e-118 427.9 225 92.9
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 2.3e-117 425.6 225 92.4
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 1.4e-114 416.4 232 89.2
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 5.4e-106 387.9 225 84.4
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 4.5e-105 384.8 225 84.0
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 1.1e-103 380.2 225 82.2
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 4.0e-101 371.7 225 81.3
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 4.0e-101 371.7 226 81.9
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 1.2e-100 370.2 225 81.3
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 6.6e-96 354.4 225 75.6
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 8.6e-96 354.0 225 76.0
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.9e-95 352.8 225 76.0
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.3e-95 352.1 225 76.0
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.3e-95 352.1 225 76.0
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 4.3e-95 351.7 225 76.9
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 5.6e-95 351.3 225 75.1
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.6e-94 348.6 225 75.1
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 3.6e-94 348.6 225 74.2
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 3.6e-94 348.6 225 73.8
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 4.7e-94 348.2 225 75.6
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 74.2
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 3.1e-93 345.5 225 75.1
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 4.0e-93 345.1 225 74.7
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 8.9e-93 344.0 225 74.2
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 8.9e-93 344.0 225 73.8
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.2e-92 343.6 225 72.9
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 74.2
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 2.0e-92 342.8 225 73.3
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.4e-92 342.0 225 73.3
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 72.9
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 72.9
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 4.4e-92 341.7 225 73.3
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 7.5e-92 340.9 225 74.2
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 9.8e-92 340.5 225 72.9
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.2e-91 339.3 227 73.6
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 2.4e-90 335.9 225 72.4
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 4.1e-90 335.1 225 72.0
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 5.4e-90 334.7 225 73.3
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 5.4e-90 334.7 223 71.7
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 7.0e-90 334.3 225 71.6
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 7.0e-90 334.3 225 73.3
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 1.6e-89 333.2 225 70.2
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 2.0e-89 332.8 225 72.9
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 2.0e-89 332.8 225 72.9
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.7e-89 332.4 225 71.6
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 3.5e-89 332.0 279 62.4
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 4.6e-89 331.6 225 71.6
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 6.0e-89 331.3 224 72.3
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 71.1
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 1.0e-88 330.5 225 71.6
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.7e-88 329.7 225 69.3
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 2.3e-88 329.3 224 72.3
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 3.0e-88 328.9 225 68.9
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 3.9e-88 328.6 225 72.0
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 3.9e-88 328.6 225 69.3
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 3.9e-88 328.6 225 72.4
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 6.6e-88 327.8 225 74.2
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 1.1e-87 327.0 225 71.1
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.5e-87 326.6 226 72.1
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.5e-87 326.6 226 72.1
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 1.9e-87 326.2 225 71.1
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 5.6e-87 324.7 226 71.2
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 7.3e-87 324.3 225 70.7
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.6e-86 323.2 225 68.9
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 2.1e-86 322.8 226 69.0
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 2.8e-86 322.4 225 70.7
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 3.6e-86 322.0 225 70.2
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 1.8e-85 319.7 225 70.2
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 2.3e-85 319.3 225 70.2
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 5.2e-85 318.2 225 71.1
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 1.2e-84 317.0 196 77.0
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 2.6e-84 315.8 225 68.4
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 2.6e-84 315.8 225 67.1
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 9.8e-84 313.9 228 68.0
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 1.3e-83 313.5 226 67.3
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 2.9e-83 312.4 225 70.2
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 2.9e-83 312.4 225 66.2
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 4.9e-83 311.6 225 68.0
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 1.1e-82 310.5 225 66.7
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.4e-82 309.3 225 69.3
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 3.2e-82 308.9 260 61.2
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 1.2e-81 307.0 225 68.4
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.2e-81 307.0 266 59.8
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 1.6e-81 306.6 225 64.4
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 1.6e-81 306.6 225 68.9
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 2.7e-81 305.8 225 68.0
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 3.5e-81 305.4 225 68.0
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 3.5e-81 305.4 225 68.0
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 3.5e-81 305.4 225 68.4
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 6.0e-81 304.7 196 74.0
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 7.8e-81 304.3 225 67.6
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 6.6e-80 301.2 228 65.4
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 1.9e-79 299.7 208 71.2
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 2.5e-79 299.3 225 63.1
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 4.3e-79 298.5 219 68.5
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 6.2e-78 294.7 225 67.1
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 8.1e-78 294.3 245 62.4
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.5e-76 290.0 225 64.9
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 3.4e-76 288.9 227 61.7
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 5.8e-76 288.1 227 62.1
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 2.4e-74 282.7 225 60.9
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 3.2e-74 282.3 225 65.3
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 1.0e-72 277.3 225 63.1
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 1.7e-72 276.6 177 76.3
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 3.0e-72 275.8 225 63.6
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 3.0e-72 275.8 217 62.7
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 4.7e-70 268.5 228 59.2
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 1.8e-69 266.5 225 57.8
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.7e-67 260.0 225 61.3
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 4.9e-67 258.5 227 58.1
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 2.1e-65 253.1 210 59.0
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.5e-63 246.9 225 60.0
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 1.3e-62 243.8 174 67.2
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 2.8e-62 242.7 226 54.9
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 2.2e-59 233.0 252 51.6
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 2.2e-59 233.0 252 51.6
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 4.9e-59 231.9 225 52.0
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 6.4e-59 231.5 229 57.2
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 3.9e-56 222.2 249 51.4
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 3.8e-51 205.7 225 50.2
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 3.8e-51 205.7 225 48.0
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 7.1e-50 201.4 164 62.8
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 1.0e-48 197.6 218 46.8
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 9.6e-47 191.0 122 73.0
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 3.5e-41 172.6 205 42.9
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 1.0e-40 171.0 215 42.3
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 5.7e-39 165.2 226 42.0
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 2.7e-33 146.4 130 60.8
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 3.5e-33 146.0 140 58.6
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.5e-31 139.8 100 66.0
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.3e-31 139.0 100 66.0
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 2.0e-28 130.2 150 48.0
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.1e-21 107.8 71 67.6
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 7.2e-18 95.1 63 61.9
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.9e-16 89.4 105 46.7
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 5.1e-16 89.0 78 53.8
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.3e-15 86.3 51 74.5
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 3.3e-15 86.3 51 74.5
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 3.3e-15 86.3 123 43.9
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 7.4e-15 85.1 51 74.5
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 7.4e-15 85.1 51 74.5
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 1.2e-12 77.8 97 48.5
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 3.5e-12 76.3 79 50.6
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 8.5e-11 71.6 219 27.4
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 8.5e-11 71.6 41 80.5
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 5.5e-10 68.9 51 68.6
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.8e-08 63.9 51 64.7
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 7.5e-07 58.5 51 54.9
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 7.5e-07 58.5 68 50.0


User provided reference genes

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