Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11104_v3 Cicer arietinum L. HOM05D002481 ORTHO05D002643 6.4e-64 247.3 128 100.0
Ca_19370_v3 Cicer arietinum L. HOM05D002481 ORTHO05D002643 5.1e-45 184.5 113 88.5
Ca_16620_v3 Cicer arietinum L. HOM05D002481 ORTHO05D002643 1.1e-44 183.3 113 86.7
Ca_16388_v3 Cicer arietinum L. HOM05D002481 ORTHO05D002643 1.3e-35 153.3 113 76.1
Ca_29698_v3 Cicer arietinum L. HOM05D002481 ORTHO05D002643 1.3e-35 153.3 113 76.1
Psat7g190800 Pisum sativum HOM05D002481 ORTHO05D002643 3.6e-30 135.2 118 66.9
Medtr4g055420 Medicago truncatula HOM05D002481 ORTHO05D002643 4.7e-30 134.8 115 67.8
Glyma.12G084900 Glycine max HOM05D002481 ORTHO05D002643 1.3e-27 126.7 115 61.7
TPR.G2619 Trifolium pratense HOM05D002481 ORTHO05D002643 2.2e-27 125.9 115 61.7
Glyma.11G189400 Glycine max HOM05D002481 ORTHO05D002643 2.0e-25 119.4 116 58.6
Phvul.011G090100 Phaseolus vulgaris HOM05D002481 ORTHO05D002643 2.9e-24 115.5 116 56.9
arahy.Tifrunner.gnm1.ann1.BG7X3L Arachis hypogaea HOM05D002481 ORTHO05D002643 5.5e-23 111.3 116 56.9
arahy.Tifrunner.gnm1.ann1.EQG5N7 Arachis hypogaea HOM05D002481 ORTHO05D002643 8.0e-22 107.5 117 50.4
arahy.Tifrunner.gnm1.ann1.X43XEU Arachis hypogaea HOM05D002481 ORTHO05D002643 1.0e-21 107.1 116 55.2
TPR.G32398 Trifolium pratense HOM05D002481 ORTHO05D002643 8.8e-21 104.0 121 51.2
Medtr2g084805 Medicago truncatula HOM05D002481 ORTHO05D002643 1.1e-20 103.6 107 50.5
arahy.Tifrunner.gnm1.ann1.5JH3WA Arachis hypogaea HOM05D002481 ORTHO05D002643 1.5e-20 103.2 117 48.7
Ca_01681_v3 Cicer arietinum L. HOM05D002481 ORTHO05D002643 3.3e-20 102.1 122 50.0
Psat5g254560 Pisum sativum HOM05D002481 ORTHO05D002643 5.7e-20 101.3 122 48.4
Lalb_Chr24g0395121 Lupinus albus HOM05D002481 ORTHO05D002643 9.7e-20 100.5 121 47.1
Glyma.12G181500 Glycine max HOM05D002481 ORTHO05D002643 1.8e-18 96.3 114 53.5
Lalb_Chr14g0374211 Lupinus albus HOM05D002481 ORTHO05D002643 1.8e-18 96.3 122 48.4
RcHm_v2.0_Chr5g0055301 Rosa chinensis HOM05D002481 ORTHO05D002643 3.1e-18 95.5 111 50.5
CSS0045376 Camellia sinensis var. sinensis HOM05D002481 ORTHO05D002643 5.3e-18 94.7 122 45.9
Glyma.13G319400 Glycine max HOM05D002481 ORTHO05D002643 5.3e-18 94.7 123 49.6
Lj3g0021704 Lotus japonicus HOM05D002481 ORTHO05D002643 9.1e-18 94.0 123 47.2
Gohir.A09G092800 Gossypium hirsutum HOM05D002481 ORTHO05D002643 2.0e-17 92.8 112 46.4
MD03G1134500 Malus domestica HOM05D002481 ORTHO05D002643 2.0e-17 92.8 106 50.9
Thecc.09G292100 Theobroma cacao HOM05D002481 ORTHO05D002643 2.0e-17 92.8 112 48.2
Gohir.A07G107000 Gossypium hirsutum HOM05D002481 ORTHO05D002643 2.6e-17 92.4 115 50.4
Gohir.D09G092800 Gossypium hirsutum HOM05D002481 ORTHO05D002643 3.5e-17 92.0 112 45.5
Gohir.D07G111000 Gossypium hirsutum HOM05D002481 ORTHO05D002643 4.5e-17 91.7 115 48.7
Gorai.001G119300 Gossypium raimondii HOM05D002481 ORTHO05D002643 4.5e-17 91.7 115 48.7
Lalb_Chr22g0350631 Lupinus albus HOM05D002481 ORTHO05D002643 4.5e-17 91.7 116 45.7
FAN16G0008 Fragaria x ananassa HOM05D002481 ORTHO05D002643 7.7e-17 90.9 115 47.0
MD11G1156800 Malus domestica HOM05D002481 ORTHO05D002643 7.7e-17 90.9 96 51.0
FvH4_3g29930 Fragaria vesca HOM05D002481 ORTHO05D002643 1.0e-16 90.5 123 45.5
FAN11G0077 Fragaria x ananassa HOM05D002481 ORTHO05D002643 1.0e-16 90.5 123 45.5
Lj3g0000885 Lotus japonicus HOM05D002481 ORTHO05D002643 1.0e-16 90.5 82 61.0
Prupe.6G118800 Prunus persica HOM05D002481 ORTHO05D002643 1.0e-16 90.5 122 45.1
Dinv12526 Davidia involucrata HOM05D002481 ORTHO05D002643 1.7e-16 89.7 125 47.2
Lalb_Chr01g0004741 Lupinus albus HOM05D002481 ORTHO05D002643 1.7e-16 89.7 124 45.2
Gorai.006G109400 Gossypium raimondii HOM05D002481 ORTHO05D002643 2.2e-16 89.4 112 45.5
FAN21G3419 Fragaria x ananassa HOM05D002481 ORTHO05D002643 3.8e-16 88.6 123 44.7
Cfa010085 Carpinus fangiana HOM05D002481 ORTHO05D002643 6.5e-16 87.8 123 48.8
Atru.chr3.3386 Acer truncatum HOM05D002481 ORTHO05D002643 8.5e-16 87.4 123 44.7
COL.COLO4_19291 Corchorus olitorius HOM05D002481 ORTHO05D002643 1.5e-15 86.7 114 46.5
Duzib150G0893 Durio zibethinus HOM05D002481 ORTHO05D002643 1.5e-15 86.7 114 46.5
Duzib168G2335 Durio zibethinus HOM05D002481 ORTHO05D002643 1.5e-15 86.7 112 44.6
DCAR_015479 Daucus carota HOM05D002481 ORTHO05D002643 1.9e-15 86.3 113 48.7
TAR633G1373 Trochodendron aralioides HOM05D002481 ORTHO05D002643 1.9e-15 86.3 104 49.0
Sabra04G0129500 Salix brachista HOM05D002481 ORTHO05D002643 3.2e-15 85.5 96 52.1
Haze_23454 Corylus avellana HOM05D002481 ORTHO05D002643 5.5e-15 84.7 116 49.1
TAR623G1331 Trochodendron aralioides HOM05D002481 ORTHO05D002643 9.4e-15 84.0 111 48.6
Lj1P220T16 Lonicera japonica HOM05D002481 ORTHO05D002643 1.6e-14 83.2 123 44.7
Phvul.005G127500 Phaseolus vulgaris HOM05D002481 ORTHO05D002643 1.6e-14 83.2 112 49.1
Cpa.g.sc47.62 Carica papaya HOM05D002481 ORTHO05D002643 2.7e-14 82.4 116 46.6
VMungo1080G0639 Vigna mungo HOM05D002481 ORTHO05D002643 2.7e-14 82.4 112 49.1
Sc12g0004130 Simmondsia chinensis HOM05D002481 ORTHO05D002643 3.6e-14 82.0 104 46.2
TWI75G0854 Tripterygium wilfordii HOM05D002481 ORTHO05D002643 4.7e-14 81.6 107 45.8
CsaV3_6G014700 Cucumis sativus L. HOM05D002481 ORTHO05D002643 6.1e-14 81.3 123 41.5
DCAR_018741 Daucus carota HOM05D002481 ORTHO05D002643 6.1e-14 81.3 97 49.5
CANSAT54G1888 Cannabis sativa HOM05D002481 ORTHO05D002643 8.0e-14 80.9 116 44.0
ECA233G6110 Erigeron canadensis HOM05D002481 ORTHO05D002643 1.0e-13 80.5 121 42.1
Hma1.2p1_1264F.1_g271310 Hydrangea macrophylla HOM05D002481 ORTHO05D002643 1.0e-13 80.5 122 40.2
Ciclev10029315m.g Citrus clementina HOM05D002481 ORTHO05D002643 1.4e-13 80.1 125 40.0
Dinv29422 Davidia involucrata HOM05D002481 ORTHO05D002643 1.4e-13 80.1 114 48.2
Lsat_1_v5_gn_2_96420 Lactuca sativa HOM05D002481 ORTHO05D002643 1.4e-13 80.1 121 40.5
MSTRG.17736 Avicennia marina HOM05D002481 ORTHO05D002643 1.8e-13 79.7 95 43.2
MELO3C021455.2 Cucumis melo HOM05D002481 ORTHO05D002643 1.8e-13 79.7 123 41.5
Manes.04G009100 Manihot esculenta HOM05D002481 ORTHO05D002643 2.3e-13 79.3 111 46.8
Manes.11G156800 Manihot esculenta HOM05D002481 ORTHO05D002643 3.0e-13 79.0 96 52.1
CDE08G0576 Ceratophyllum demersum HOM05D000911 ORTHO05D000890 4.0e-13 78.6 92 48.9
Lsat_1_v5_gn_6_41140 Lactuca sativa HOM05D002481 ORTHO05D002643 4.0e-13 78.6 104 47.1
TWI79G0527 Tripterygium wilfordii HOM05D002481 ORTHO05D002643 4.0e-13 78.6 107 45.8
AL4G22410 Arabidopsis lyrata HOM05D002481 ORTHO05D002643 5.2e-13 78.2 100 45.0
Rhsim01G0208500 Rhododendron simsii HOM05D002481 ORTHO05D002643 5.2e-13 78.2 116 43.1
AT2G27830 Arabidopsis thaliana HOM05D002481 ORTHO05D002643 8.8e-13 77.4 101 45.5
Oeu050177.2 Olea europaea HOM05D002481 ORTHO05D002643 8.8e-13 77.4 106 45.3
Potri.004G188600 Populus trichocarpa HOM05D002481 ORTHO05D002643 1.2e-12 77.0 96 49.0
Eucgr.J00422 Eucalyptus grandis HOM05D002481 ORTHO05D002643 1.5e-12 76.6 105 47.6
Lj1g0001045 Lotus japonicus HOM05D000231 ORTHO05D018524 2.0e-12 76.3 95 46.3
Solyc01g009430.3 Solanum lycopersicum HOM05D002481 ORTHO05D002643 3.4e-12 75.5 120 41.7
vmacro14373 Vaccinium macrocarpon HOM05D002481 ORTHO05D002643 3.4e-12 75.5 125 42.4
ClCG02G021890 Citrullus lanatus HOM05D002481 ORTHO05D002643 5.7e-12 74.7 105 42.9
QL01p013807 Quercus lobata HOM05D002481 ORTHO05D002643 5.7e-12 74.7 117 41.0
QL10p041443 Quercus lobata HOM05D002481 ORTHO05D002643 5.7e-12 74.7 117 41.0
PGSC0003DMG400028068 Solanum tuberosum HOM05D002481 ORTHO05D002643 5.7e-12 74.7 116 43.1
PGR119G2131 Punica granatum HOM05D002481 ORTHO05D002643 7.5e-12 74.3 105 49.5
THA.LOC104826403 Tarenaya hassleriana HOM05D002481 ORTHO05D002643 7.5e-12 74.3 99 47.5
CiPaw.14G103800 Carya illinoinensis HOM05D002481 ORTHO05D002643 1.3e-11 73.6 122 41.8
HanXRQChr14g0451951 Helianthus annuus HOM05D002481 ORTHO05D002643 1.3e-11 73.6 104 42.3
HanXRQChr13g0396941 Helianthus annuus HOM05D002481 ORTHO05D002643 1.7e-11 73.2 97 45.4
Nitab4.5_0001453g0050 Nicotiana tabacum HOM05D002481 ORTHO05D002643 1.7e-11 73.2 113 41.6
Aqoxy2G01422 Aquilegia oxysepala HOM05D002481 ORTHO05D002643 2.2e-11 72.8 120 42.5
Aqoxy2G01424 Aquilegia oxysepala HOM05D002481 ORTHO05D002643 2.2e-11 72.8 120 42.5
Sopen01g004940 Solanum pennellii HOM05D002481 ORTHO05D002643 2.2e-11 72.8 120 40.8
ECA238G4288 Erigeron canadensis HOM05D002481 ORTHO05D002643 2.8e-11 72.4 106 43.4
Oeu023723.1 Olea europaea HOM05D002481 ORTHO05D002643 2.8e-11 72.4 107 43.9
Hund00790 Selenicereus undatus HOM05D002481 ORTHO05D002643 2.8e-11 72.4 101 41.6
Eucgr.B03896 Eucalyptus grandis HOM05D002481 ORTHO05D002643 3.7e-11 72.0 114 42.1
Actinidia37101 Actinidia chinensis HOM05D002481 ORTHO05D002643 6.3e-11 71.2 142 35.2
Aa31LG5G8190 Aethionema arabicum HOM05D002481 ORTHO05D002643 6.3e-11 71.2 119 37.8
MSTRG.21066 Avicennia marina HOM05D002481 ORTHO05D002643 8.3e-11 70.9 125 39.2
AUR62023942 Chenopodium quinoa HOM05D002481 ORTHO05D002643 8.3e-11 70.9 129 38.0
Potri.009G149200 Populus trichocarpa HOM05D002481 ORTHO05D002643 1.4e-10 70.1 114 43.0
Aqoxy1G00947 Aquilegia oxysepala HOM05D002481 ORTHO05D002643 1.8e-10 69.7 82 48.8
Carub.0004s0859 Capsella rubella HOM05D002481 ORTHO05D002643 2.4e-10 69.3 102 43.1
CAN.G386.31 Capsicum annuum HOM05D002481 ORTHO05D002643 2.4e-10 69.3 116 41.4
Migut.N02516 Erythranthe guttata HOM05D002481 ORTHO05D002643 2.4e-10 69.3 115 39.1
THA.LOC104800558 Tarenaya hassleriana HOM05D002481 ORTHO05D002643 2.4e-10 69.3 96 42.7
BcaC02g10910 Brassica carinata HOM05D002481 ORTHO05D002643 3.1e-10 68.9 99 42.4
A07p18420 Brassica napus HOM05D002481 ORTHO05D002643 3.1e-10 68.9 99 42.4
C04p23760 Brassica napus HOM05D002481 ORTHO05D002643 3.1e-10 68.9 99 42.4
BolC4t23874H Brassica oleracea HOM05D002481 ORTHO05D002643 3.1e-10 68.9 99 42.4
BraA07t29558Z Brassica rapa HOM05D002481 ORTHO05D002643 3.1e-10 68.9 99 42.4
Thhalv10017255m.g Eutrema salsugineum HOM05D002481 ORTHO05D002643 3.1e-10 68.9 99 42.4
Lj2C994G1 Lonicera japonica HOM05D002481 ORTHO05D002643 3.1e-10 68.9 118 41.5
Peaxi162Scf00789g00532 Petunia axillaris HOM05D002481 ORTHO05D002643 3.1e-10 68.9 95 40.0
MBI01_g41085_MAGBIO Magnolia biondii HOM05D002481 ORTHO05D002643 5.4e-10 68.2 109 39.4
SalBow3G3337 Salvia bowleyana HOM05D002481 ORTHO05D002643 7.0e-10 67.8 122 36.1
EL10Ac9g21073 Beta vulgaris HOM05D002481 ORTHO05D002643 1.2e-09 67.0 97 39.2
BcaB02g10121 Brassica carinata HOM05D002481 ORTHO05D002643 2.0e-09 66.2 114 38.6
CAN.G919.6 Capsicum annuum HOM05D002481 ORTHO05D002643 3.5e-09 65.5 104 40.4
Cc01_g09840 Coffea canephora HOM05D002481 ORTHO05D002643 3.5e-09 65.5 114 39.5
Nitab4.5_0007303g0040 Nicotiana tabacum HOM05D002481 ORTHO05D002643 3.5e-09 65.5 113 37.2
PGR102G2678 Punica granatum HOM05D002481 ORTHO05D002643 4.5e-09 65.1 128 37.5
Sabra09G0117800 Salix brachista HOM05D002481 ORTHO05D002643 4.5e-09 65.1 73 54.8
Ah.01g004650 Amaranthus hybridus HOM05D002481 ORTHO05D002643 5.9e-09 64.7 97 40.2
MSTRG.12354 Avicennia marina HOM05D002481 ORTHO05D002643 5.9e-09 64.7 107 41.1
Nitab4.5_0003082g0010 Nicotiana tabacum HOM05D002481 ORTHO05D002643 5.9e-09 64.7 108 38.0
Peaxi162Scf00157g00065 Petunia axillaris HOM05D002481 ORTHO05D002643 5.9e-09 64.7 114 38.6
SGA_v2.0_scaffold27G11606 Striga asiatica HOM05D002481 ORTHO05D002643 7.7e-09 64.3 114 39.5
CDE06G2425 Ceratophyllum demersum HOM05D001688 ORTHO05D001571 1.3e-08 63.5 87 40.2
PSO063G1260 Papaver somniferum HOM05D002481 ORTHO05D002643 1.3e-08 63.5 126 35.7
Solyc11g066860.2 Solanum lycopersicum HOM05D002481 ORTHO05D002643 1.3e-08 63.5 120 39.2
Sopen11g026570 Solanum pennellii HOM05D002481 ORTHO05D002643 1.3e-08 63.5 126 38.1
CAN.G644.33 Capsicum annuum HOM05D002481 ORTHO05D002643 1.7e-08 63.2 117 41.0
Oeu010653.2 Olea europaea HOM05D002481 ORTHO05D002643 2.2e-08 62.8 118 43.2
Sp4g10670 Schrenkiella parvula HOM05D002481 ORTHO05D002643 2.2e-08 62.8 113 38.9
PGSC0003DMG400007125 Solanum tuberosum HOM05D002481 ORTHO05D002643 2.9e-08 62.4 122 38.5
PSO339G5316 Papaver somniferum HOM05D002481 ORTHO05D002643 3.8e-08 62.0 110 37.3
SGA_v2.0_scaffold83G26429 Striga asiatica HOM05D002481 ORTHO05D002643 3.8e-08 62.0 98 40.8
Oeu010651.1 Olea europaea HOM05D002481 ORTHO05D002643 6.5e-08 61.2 118 42.4
PGSC0003DMG400026533 Solanum tuberosum HOM05D002481 ORTHO05D002643 8.5e-08 60.8 121 39.7
MSTRG.18731 Avicennia marina HOM05D002481 ORTHO05D002643 1.5e-07 60.1 127 34.6
Nitab4.5_0000227g0140 Nicotiana tabacum HOM05D002481 ORTHO05D002643 1.9e-07 59.7 120 35.0
Sc21g0004700 Simmondsia chinensis HOM05D002481 ORTHO05D002643 1.9e-07 59.7 86 44.2
Migut.D02335 Erythranthe guttata HOM05D002481 ORTHO05D002643 3.2e-07 58.9 120 39.2
CSS0032827 Camellia sinensis var. sinensis HOM05D002481 ORTHO05D002643 7.2e-07 57.8 55 56.4
Solyc06g074620.3 Solanum lycopersicum HOM05D002481 ORTHO05D002643 9.4e-07 57.4 105 40.0
HanXRQChr02g0054821 Helianthus annuus HOM05D002481 ORTHO05D002643 1.2e-06 57.0 82 43.9
Sopen06g031030 Solanum pennellii HOM05D002481 ORTHO05D002643 1.6e-06 56.6 105 40.0
TPR.G37703 Trifolium pratense HOM05D002481 ORTHO05D002643 1.6e-06 56.6 47 63.8
Psat4g069200 Pisum sativum HOM05D002481 ORTHO05D002643 2.1e-06 56.2 47 63.8
HPP92_023110 Vanilla planifolia HOM05D002481 ORTHO05D002643 2.1e-06 56.2 93 37.6
Psat2g179840 Pisum sativum HOM05D002481 ORTHO05D002643 2.7e-06 55.8 62 46.8
TPR.G19590 Trifolium pratense HOM05D002481 ORTHO05D002643 3.6e-06 55.5 49 55.1
Migut.E00969 Erythranthe guttata HOM05D002481 ORTHO05D002643 8.0e-06 54.3 61 50.8
Nn2g13991 Nelumbo nucifera HOM05D002481 ORTHO05D002643 8.0e-06 54.3 93 41.9


User provided reference genes

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