Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_11084_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 8.0e-77 290.4 154 100.0
Ca_11092_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 2.1e-69 265.8 151 94.0
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 7.0e-57 224.2 203 64.5
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 1.2e-48 196.8 202 59.9
Psat2g188360 Pisum sativum HOM05D003636 ORTHO05D005160 6.2e-45 184.5 188 62.2
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 1.2e-43 180.3 204 55.9
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 1.5e-43 179.9 136 73.5
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 9.8e-43 177.2 136 72.8
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 9.8e-43 177.2 131 74.8
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 8.3e-42 174.1 136 72.1
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 1.4e-41 173.3 135 72.6
Ca_14184_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 9.5e-38 160.6 156 60.9
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 9.5e-38 160.6 136 66.9
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 2.3e-36 156.0 136 66.9
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 4.4e-35 151.8 128 64.8
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 9.9e-35 150.6 128 64.1
TPR.G3263 Trifolium pratense HOM05D003636 ORTHO05D005160 6.8e-28 127.9 92 76.1
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 3.2e-25 119.0 134 54.5
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 7.1e-25 117.9 201 40.3
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 3.5e-24 115.5 144 51.4
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 1.7e-23 113.2 140 49.3
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 3.0e-23 112.5 120 51.7
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 5.1e-23 111.7 137 50.4
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 5.1e-23 111.7 134 50.0
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.5e-22 110.2 130 51.5
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 1.5e-22 110.2 120 54.2
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 1.5e-22 110.2 120 54.2
Thecc.04G247000 Theobroma cacao HOM05D003636 ORTHO05D005160 1.5e-22 110.2 133 48.1
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 3.3e-22 109.0 135 51.1
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 4.3e-22 108.6 131 51.1
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 5.6e-22 108.2 143 49.0
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 5.6e-22 108.2 137 46.0
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 9.6e-22 107.5 123 53.7
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 1.3e-21 107.1 137 46.0
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 1.3e-21 107.1 117 55.6
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 1.6e-21 106.7 122 51.6
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 3.6e-21 105.5 127 50.4
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 3.6e-21 105.5 127 50.4
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 8.1e-21 104.4 136 47.1
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 8.1e-21 104.4 125 50.4
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 1.1e-20 104.0 122 53.3
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 1.1e-20 104.0 117 53.0
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 1.1e-20 104.0 125 51.2
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 1.4e-20 103.6 120 52.5
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 2.4e-20 102.8 188 40.4
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 2.4e-20 102.8 127 48.0
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 2.4e-20 102.8 136 47.1
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 2.4e-20 102.8 132 49.2
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 2.4e-20 102.8 132 50.0
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 2.4e-20 102.8 127 48.0
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 3.1e-20 102.4 127 48.8
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 4.0e-20 102.1 112 56.2
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 4.0e-20 102.1 140 46.4
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 4.0e-20 102.1 136 47.8
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 5.3e-20 101.7 137 43.8
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 6.9e-20 101.3 126 50.0
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.2e-19 100.5 140 46.4
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 1.2e-19 100.5 197 38.6
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 1.2e-19 100.5 113 53.1
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 1.5e-19 100.1 127 47.2
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 2.6e-19 99.4 120 48.3
HanXRQChr09g0258341 Helianthus annuus HOM05D003636 ORTHO05D005160 2.6e-19 99.4 123 50.4
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 2.6e-19 99.4 115 53.9
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 2.6e-19 99.4 134 46.3
Haze_21469 Corylus avellana HOM05D003636 ORTHO05D005160 3.4e-19 99.0 115 54.8
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 3.4e-19 99.0 197 38.1
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 4.4e-19 98.6 139 46.0
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 5.8e-19 98.2 132 43.9
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 5.8e-19 98.2 118 50.8
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 7.6e-19 97.8 136 45.6
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 7.6e-19 97.8 117 48.7
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 9.9e-19 97.4 117 48.7
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 1.3e-18 97.1 153 43.1
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 2.2e-18 96.3 191 36.6
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 2.2e-18 96.3 131 47.3
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 2.9e-18 95.9 188 39.4
Cc01_g03130 Coffea canephora HOM05D003636 ORTHO05D005160 3.8e-18 95.5 201 36.8
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 3.8e-18 95.5 123 48.8
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 6.4e-18 94.7 186 37.6
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 8.4e-18 94.4 128 46.9
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 2.4e-17 92.8 114 47.4
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 5.4e-17 91.7 116 50.9
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 7.1e-17 91.3 119 47.9
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 7.1e-17 91.3 184 38.6
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 7.1e-17 91.3 135 45.2
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 2.1e-16 89.7 121 49.6
Hund02552 Selenicereus undatus HOM05D003636 ORTHO05D005160 2.7e-16 89.4 161 39.8
Thecc.05G005400 Theobroma cacao HOM05D003636 ORTHO05D005160 3.5e-16 89.0 187 34.2
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 6.0e-16 88.2 109 50.5
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 6.0e-16 88.2 133 43.6
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 1.0e-15 87.4 158 38.0
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 1.7e-15 86.7 120 48.3
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 1.7e-15 86.7 144 44.4
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 2.3e-15 86.3 142 40.1
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 3.0e-15 85.9 143 41.3
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 3.0e-15 85.9 120 44.2
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 3.9e-15 85.5 137 42.3
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 5.1e-15 85.1 116 45.7
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 6.6e-15 84.7 149 39.6
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 6.6e-15 84.7 125 43.2
Hund11200 Selenicereus undatus HOM05D003636 ORTHO05D005160 6.6e-15 84.7 158 39.9
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 1.5e-14 83.6 142 38.7
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 3.3e-14 82.4 140 40.7
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 7.3e-14 81.3 119 43.7
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 7.3e-14 81.3 112 50.9
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 7.3e-14 81.3 136 44.9
Dinv44638 Davidia involucrata HOM05D003636 ORTHO05D005160 1.3e-13 80.5 131 42.7
Dinv00242 Davidia involucrata HOM05D003636 ORTHO05D005160 2.1e-13 79.7 116 44.8
Dinv02719 Davidia involucrata HOM05D003636 ORTHO05D005160 2.1e-13 79.7 114 44.7
unitig_736.g22446 Utricularia gibba HOM05D003636 ORTHO05D005160 2.1e-13 79.7 112 44.6
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 3.6e-13 79.0 130 44.6
Nitab4.5_0000026g0370 Nicotiana tabacum HOM05D003636 ORTHO05D005160 3.6e-13 79.0 119 44.5
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 8.1e-13 77.8 108 45.4
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 3.1e-12 75.9 140 40.0
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 5.3e-12 75.1 132 37.1
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 1.5e-11 73.6 124 41.1
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 1.7e-10 70.1 116 44.0
CARHR172220 Cardamine hirsuta HOM05D003636 ORTHO05D005160 1.7e-10 70.1 180 33.3
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 2.2e-10 69.7 116 43.1
Ah.10g037290 Amaranthus hybridus HOM05D003636 ORTHO05D005160 3.8e-10 68.9 116 44.0
Psat2g188720 Pisum sativum HOM05D003636 ORTHO05D005160 7.9e-08 61.2 94 46.8
Cpa.g.sc58.55 Carica papaya HOM05D003636 ORTHO05D005160 1.0e-07 60.8 86 45.3
Duzib138G1962 Durio zibethinus HOM05D003636 ORTHO05D005160 2.3e-07 59.7 73 43.8


User provided reference genes

Program Settings